Stats for family Alligatoridae
Species in family:
| Stats for total mtDNA (group size: 5 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Alligator mississippiensis | 43.0 | 57.0 | 4911 | 2252 | 4283 | 5200 | 73.1 |
| Caiman crocodilus | 42.5 | 57.5 | 5422 | 2194 | 4471 | 5813 | 24.1 |
| Paleosuchus trigonatus | 47.4 | 52.6 | 5408 | 2150 | 3482 | 4908 | 30.9 |
| Alligator sinensis | 46.0 | 54.0 | 5211 | 2488 | 4118 | 4929 | 60.7 |
| Paleosuchus palpebrosus | 47.6 | 52.4 | 5084 | 2025 | 3242 | 4584 | 24.1 |
| Stats for total protein-coding genes (group size: 5 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Alligator mississippiensis | 43.5 | 56.5 | 3556 | 1393 | 2987 | 3445 | 73.1 |
| Caiman crocodilus | 44.4 | 55.6 | 3782 | 1264 | 2762 | 3552 | 24.1 |
| Paleosuchus trigonatus | 47.9 | 52.1 | 4070 | 1368 | 2528 | 3381 | 30.9 |
| Alligator sinensis | 46.6 | 53.4 | 3750 | 1561 | 2881 | 3197 | 60.7 |
| Paleosuchus palpebrosus | 47.9 | 52.1 | 4035 | 1394 | 2547 | 3368 | 24.1 |
| Stats for D-loop (group size: 2 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Caiman crocodilus | 28.4 | 71.6 | 421 | 145 | 726 | 700 | 24.1 |
| Paleosuchus trigonatus | 50.6 | 49.4 | 125 | 46 | 98 | 69 | 30.9 |
| Stats for total tRNA-coding genes (group size: 5 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Alligator mississippiensis | 43.2 | 56.8 | 414 | 273 | 379 | 523 | 73.1 |
| Caiman crocodilus | 44.0 | 56.0 | 417 | 270 | 367 | 507 | 24.1 |
| Paleosuchus trigonatus | 43.9 | 56.1 | 423 | 259 | 353 | 517 | 30.9 |
| Alligator sinensis | 44.8 | 55.2 | 691 | 404 | 612 | 736 | 60.7 |
| Paleosuchus palpebrosus | 45.4 | 54.6 | 381 | 231 | 298 | 439 | 24.1 |
| Stats for total rRNA-coding genes (group size: 5 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Alligator mississippiensis | 44.3 | 55.7 | 669 | 469 | 534 | 894 | 73.1 |
| Caiman crocodilus | 45.3 | 54.7 | 685 | 484 | 526 | 885 | 24.1 |
| Paleosuchus trigonatus | 46.1 | 53.9 | 714 | 468 | 484 | 900 | 30.9 |
| Alligator sinensis | 47.0 | 53.0 | 701 | 503 | 513 | 847 | 60.7 |
| Paleosuchus palpebrosus | 47.0 | 53.0 | 591 | 390 | 385 | 723 | 24.1 |
| Stats for ATP6 (group size: 5 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Alligator mississippiensis | 43.5 | 56.5 | 229 | 66 | 179 | 204 | 73.1 |
| Caiman crocodilus | 43.6 | 56.4 | 246 | 52 | 164 | 222 | 24.1 |
| Paleosuchus trigonatus | 47.4 | 52.6 | 263 | 61 | 142 | 218 | 30.9 |
| Alligator sinensis | 45.2 | 54.8 | 225 | 84 | 184 | 191 | 60.7 |
| Paleosuchus palpebrosus | 45.2 | 54.8 | 249 | 60 | 153 | 222 | 24.1 |
| Stats for ATP8 (group size: 5 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Alligator mississippiensis | 41.4 | 58.6 | 54 | 13 | 39 | 56 | 73.1 |
| Caiman crocodilus | 40.8 | 59.2 | 59 | 10 | 40 | 60 | 24.1 |
| Paleosuchus trigonatus | 47.9 | 52.1 | 66 | 15 | 30 | 58 | 30.9 |
| Alligator sinensis | 47.0 | 53.0 | 69 | 17 | 39 | 58 | 60.7 |
| Paleosuchus palpebrosus | 48.5 | 51.5 | 67 | 15 | 28 | 59 | 24.1 |
| Stats for COX1 (group size: 5 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Alligator mississippiensis | 44.4 | 55.6 | 445 | 246 | 421 | 443 | 73.1 |
| Caiman crocodilus | 44.5 | 55.5 | 461 | 232 | 410 | 455 | 24.1 |
| Paleosuchus trigonatus | 47.5 | 52.5 | 500 | 238 | 377 | 440 | 30.9 |
| Alligator sinensis | 47.3 | 52.7 | 483 | 263 | 415 | 417 | 60.7 |
| Paleosuchus palpebrosus | 47.0 | 53.0 | 500 | 235 | 378 | 451 | 24.1 |
| Stats for COX2 (group size: 5 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Alligator mississippiensis | 43.5 | 56.5 | 214 | 85 | 170 | 219 | 73.1 |
| Caiman crocodilus | 42.6 | 57.4 | 215 | 78 | 172 | 223 | 24.1 |
| Paleosuchus trigonatus | 46.5 | 53.5 | 233 | 87 | 151 | 217 | 30.9 |
| Alligator sinensis | 46.8 | 53.2 | 221 | 101 | 170 | 196 | 60.7 |
| Paleosuchus palpebrosus | 46.7 | 53.3 | 232 | 89 | 152 | 215 | 24.1 |
| Stats for COX3 (group size: 5 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Alligator mississippiensis | 46.2 | 53.8 | 247 | 115 | 208 | 214 | 73.1 |
| Caiman crocodilus | 47.1 | 52.9 | 259 | 110 | 196 | 219 | 24.1 |
| Paleosuchus trigonatus | 50.3 | 49.7 | 277 | 117 | 191 | 199 | 30.9 |
| Alligator sinensis | 48.9 | 51.1 | 257 | 126 | 201 | 200 | 60.7 |
| Paleosuchus palpebrosus | 49.9 | 50.1 | 280 | 111 | 187 | 206 | 24.1 |
| Stats for CYTB (group size: 5 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Alligator mississippiensis | 44.1 | 55.9 | 366 | 145 | 315 | 333 | 73.1 |
| Caiman crocodilus | 45.1 | 54.9 | 393 | 126 | 290 | 341 | 24.1 |
| Paleosuchus trigonatus | 50.5 | 49.5 | 422 | 155 | 266 | 300 | 30.9 |
| Alligator sinensis | 47.3 | 52.7 | 380 | 158 | 291 | 309 | 60.7 |
| Paleosuchus palpebrosus | 50.2 | 49.8 | 418 | 153 | 267 | 299 | 24.1 |
| Stats for ND1 (group size: 5 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Alligator mississippiensis | 44.3 | 55.7 | 296 | 132 | 269 | 269 | 73.1 |
| Caiman crocodilus | 43.5 | 56.5 | 300 | 120 | 254 | 292 | 24.1 |
| Paleosuchus trigonatus | 48.3 | 51.7 | 340 | 127 | 238 | 261 | 30.9 |
| Alligator sinensis | 47.0 | 53.0 | 315 | 139 | 253 | 259 | 60.7 |
| Paleosuchus palpebrosus | 49.6 | 50.4 | 348 | 131 | 233 | 254 | 24.1 |
| Stats for ND2 (group size: 5 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Alligator mississippiensis | 39.7 | 60.3 | 320 | 102 | 289 | 351 | 73.1 |
| Caiman crocodilus | 42.9 | 57.1 | 341 | 113 | 283 | 322 | 24.1 |
| Paleosuchus trigonatus | 45.9 | 54.1 | 373 | 106 | 243 | 322 | 30.9 |
| Alligator sinensis | 45.1 | 54.9 | 350 | 130 | 272 | 313 | 60.7 |
| Paleosuchus palpebrosus | 46.6 | 53.4 | 364 | 122 | 249 | 309 | 24.1 |
| Stats for ND3 (group size: 5 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Alligator mississippiensis | 44.0 | 56.0 | 109 | 44 | 97 | 98 | 73.1 |
| Caiman crocodilus | 43.4 | 56.6 | 112 | 39 | 95 | 102 | 24.1 |
| Paleosuchus trigonatus | 45.1 | 54.9 | 115 | 42 | 93 | 98 | 30.9 |
| Alligator sinensis | 46.3 | 53.7 | 114 | 47 | 92 | 95 | 60.7 |
| Paleosuchus palpebrosus | 44.5 | 55.5 | 110 | 45 | 96 | 97 | 24.1 |
| Stats for ND4 (group size: 5 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Alligator mississippiensis | 43.3 | 56.7 | 440 | 155 | 366 | 413 | 73.1 |
| Caiman crocodilus | 46.9 | 53.1 | 485 | 159 | 307 | 423 | 24.1 |
| Paleosuchus trigonatus | 47.2 | 52.8 | 495 | 153 | 301 | 425 | 30.9 |
| Alligator sinensis | 46.1 | 53.9 | 462 | 171 | 361 | 380 | 60.7 |
| Paleosuchus palpebrosus | 48.8 | 51.2 | 500 | 169 | 298 | 404 | 24.1 |
| Stats for ND4L (group size: 5 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Alligator mississippiensis | 44.6 | 55.4 | 91 | 40 | 85 | 78 | 73.1 |
| Caiman crocodilus | 45.9 | 54.1 | 108 | 27 | 77 | 82 | 24.1 |
| Paleosuchus trigonatus | 50.7 | 49.3 | 118 | 31 | 79 | 66 | 30.9 |
| Alligator sinensis | 44.8 | 55.2 | 95 | 38 | 81 | 83 | 60.7 |
| Paleosuchus palpebrosus | 50.3 | 49.7 | 119 | 29 | 75 | 71 | 24.1 |
| Stats for ND5 (group size: 5 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Alligator mississippiensis | 42.5 | 57.5 | 565 | 206 | 475 | 566 | 73.1 |
| Caiman crocodilus | 42.9 | 57.1 | 602 | 169 | 426 | 600 | 24.1 |
| Paleosuchus trigonatus | 47.2 | 52.8 | 655 | 198 | 375 | 581 | 30.9 |
| Alligator sinensis | 46.5 | 53.5 | 605 | 237 | 453 | 517 | 60.7 |
| Paleosuchus palpebrosus | 46.1 | 53.9 | 638 | 194 | 390 | 584 | 24.1 |
| Stats for ND6 (group size: 5 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Alligator mississippiensis | 44.2 | 55.8 | 183 | 45 | 78 | 210 | 73.1 |
| Caiman crocodilus | 46.0 | 54.0 | 206 | 34 | 58 | 224 | 24.1 |
| Paleosuchus trigonatus | 50.2 | 49.8 | 218 | 44 | 51 | 209 | 30.9 |
| Alligator sinensis | 46.1 | 53.9 | 183 | 55 | 82 | 196 | 60.7 |
| Paleosuchus palpebrosus | 50.2 | 49.8 | 216 | 46 | 49 | 211 | 24.1 |
| Stats for 12S rRNA gene (group size: 5 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Alligator mississippiensis | 48.1 | 51.9 | 265 | 204 | 190 | 317 | 73.1 |
| Caiman crocodilus | 48.7 | 51.3 | 271 | 210 | 190 | 317 | 24.1 |
| Paleosuchus trigonatus | 46.7 | 53.3 | 271 | 187 | 186 | 336 | 30.9 |
| Alligator sinensis | 49.2 | 50.8 | 278 | 207 | 177 | 323 | 60.7 |
| Paleosuchus palpebrosus | 49.2 | 50.8 | 140 | 107 | 93 | 162 | 24.1 |
| Stats for 16S rRNA gene (group size: 5 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Alligator mississippiensis | 42.1 | 57.9 | 404 | 265 | 344 | 577 | 73.1 |
| Caiman crocodilus | 43.2 | 56.8 | 414 | 274 | 336 | 568 | 24.1 |
| Paleosuchus trigonatus | 45.6 | 54.4 | 443 | 281 | 298 | 564 | 30.9 |
| Alligator sinensis | 45.5 | 54.5 | 423 | 296 | 336 | 524 | 60.7 |
| Paleosuchus palpebrosus | 46.3 | 53.7 | 451 | 283 | 292 | 561 | 24.1 |
Contact: Vadim E. Fraifeld, MD, PhD
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
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If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.
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