Scientific name | Crocodylus palustris |
Common name | Mugger or marsh crocodile |
Maximum lifespan | 31.50 years (Crocodylus palustris@AnAge) |
Total mtDNA (size: 17052 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 7278 | 9774 | 4785 | 2493 | 4251 | 5523 |
Base content per 1 kb (bases) | 427 | 573 | 281 | 146 | 249 | 324 |
Base content (%) | 42.7% | 57.3% |
Total protein-coding genes (size: 11382 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 4995 | 6387 | 3452 | 1543 | 2894 | 3493 |
Base content per 1 kb (bases) | 439 | 561 | 303 | 136 | 254 | 307 |
Base content (%) | 43.9% | 56.1% |
D-loop (size: 1333 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 369 | 964 | 222 | 147 | 403 | 561 |
Base content per 1 kb (bases) | 277 | 723 | 167 | 110 | 302 | 421 |
Base content (%) | 27.7% | 72.3% |
Total tRNA-coding genes (size: 1540 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 667 | 873 | 384 | 283 | 390 | 483 |
Base content per 1 kb (bases) | 433 | 567 | 249 | 184 | 253 | 314 |
Base content (%) | 43.3% | 56.7% |
Total rRNA-coding genes (size: 2577 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 1153 | 1424 | 654 | 499 | 527 | 897 |
Base content per 1 kb (bases) | 447 | 553 | 254 | 194 | 205 | 348 |
Base content (%) | 44.7% | 55.3% |
12S rRNA gene (size: 984 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 469 | 515 | 261 | 208 | 195 | 320 |
Base content per 1 kb (bases) | 477 | 523 | 265 | 211 | 198 | 325 |
Base content (%) | 47.7% | 52.3% |
16S rRNA gene (size: 1593 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 684 | 909 | 393 | 291 | 332 | 577 |
Base content per 1 kb (bases) | 429 | 571 | 247 | 183 | 208 | 362 |
Base content (%) | 42.9% | 57.1% |
ATP6 (size: 684 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 295 | 389 | 211 | 84 | 169 | 220 |
Base content per 1 kb (bases) | 431 | 569 | 308 | 123 | 247 | 322 |
Base content (%) | 43.1% | 56.9% |
ATP8 (size: 162 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 61 | 101 | 43 | 18 | 40 | 61 |
Base content per 1 kb (bases) | 377 | 623 | 265 | 111 | 247 | 377 |
Base content (%) | 37.7% | 62.3% |
COX1 (size: 1557 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 659 | 898 | 420 | 239 | 434 | 464 |
Base content per 1 kb (bases) | 423 | 577 | 270 | 154 | 279 | 298 |
Base content (%) | 42.3% | 57.7% |
COX2 (size: 684 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 294 | 390 | 200 | 94 | 161 | 229 |
Base content per 1 kb (bases) | 430 | 570 | 292 | 137 | 235 | 335 |
Base content (%) | 43.0% | 57.0% |
COX3 (size: 784 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 360 | 424 | 236 | 124 | 201 | 223 |
Base content per 1 kb (bases) | 459 | 541 | 301 | 158 | 256 | 284 |
Base content (%) | 45.9% | 54.1% |
CYTB (size: 1156 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 524 | 632 | 367 | 157 | 293 | 339 |
Base content per 1 kb (bases) | 453 | 547 | 317 | 136 | 253 | 293 |
Base content (%) | 45.3% | 54.7% |
ND1 (size: 963 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 444 | 519 | 293 | 151 | 256 | 263 |
Base content per 1 kb (bases) | 461 | 539 | 304 | 157 | 266 | 273 |
Base content (%) | 46.1% | 53.9% |
ND2 (size: 1056 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 462 | 594 | 338 | 124 | 271 | 323 |
Base content per 1 kb (bases) | 438 | 563 | 320 | 117 | 257 | 306 |
Base content (%) | 43.8% | 56.3% |
ND3 (size: 348 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 155 | 193 | 98 | 57 | 92 | 101 |
Base content per 1 kb (bases) | 445 | 555 | 282 | 164 | 264 | 290 |
Base content (%) | 44.5% | 55.5% |
ND4 (size: 1374 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 592 | 782 | 416 | 176 | 350 | 432 |
Base content per 1 kb (bases) | 431 | 569 | 303 | 128 | 255 | 314 |
Base content (%) | 43.1% | 56.9% |
ND4L (size: 294 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 133 | 161 | 99 | 34 | 84 | 77 |
Base content per 1 kb (bases) | 452 | 548 | 337 | 116 | 286 | 262 |
Base content (%) | 45.2% | 54.8% |
ND5 (size: 1855 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 809 | 1046 | 574 | 235 | 467 | 579 |
Base content per 1 kb (bases) | 436 | 564 | 309 | 127 | 252 | 312 |
Base content (%) | 43.6% | 56.4% |
ND6 (size: 528 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 237 | 291 | 176 | 61 | 87 | 204 |
Base content per 1 kb (bases) | 449 | 551 | 333 | 116 | 165 | 386 |
Base content (%) | 44.9% | 55.1% |
ATP6 (size: 684 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
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Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
5 | 12 | 9 | 9 | 6 | 20 | 11 | 13 | 6 | 1 | 1 | 0 | 5 | 2 | 2 | 2 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
3 | 0 | 0 | 0 | 11 | 10 | 0 | 0 | 3 | 3 | 1 | 1 | 2 | 11 | 1 | 4 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
7 | 13 | 0 | 3 | 2 | 5 | 1 | 1 | 2 | 1 | 3 | 1 | 1 | 1 | 9 | 2 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
2 | 4 | 0 | 0 | 2 | 4 | 2 | 0 | 1 | 3 | 0 | 0 | 0 | 1 | 0 | 3 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
42 | 76 | 72 | 38 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
18 | 71 | 38 | 101 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
24 | 64 | 110 | 30 |
ATP8 (size: 162 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MPQLNPEPWLMISSITWLVFIVTLQPKIASLKFMNNPSSPDQKTTKTWPWPQI* | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
2 | 3 | 1 | 0 | 0 | 2 | 0 | 3 | 3 | 1 | 1 | 0 | 1 | 0 | 0 | 2 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 5 | 1 | 2 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
1 | 2 | 0 | 2 | 0 | 1 | 0 | 0 | 2 | 0 | 0 | 2 | 0 | 1 | 2 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
0 | 1 | 0 | 0 | 1 | 3 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 2 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
5 | 14 | 22 | 13 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
6 | 17 | 14 | 17 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
7 | 12 | 25 | 10 |
COX1 (size: 1557 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
22 | 19 | 28 | 10 | 9 | 22 | 3 | 8 | 10 | 2 | 13 | 4 | 19 | 3 | 19 | 28 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
4 | 0 | 1 | 6 | 17 | 13 | 0 | 3 | 12 | 26 | 2 | 2 | 9 | 19 | 1 | 5 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
14 | 18 | 1 | 2 | 8 | 17 | 0 | 1 | 6 | 4 | 13 | 2 | 2 | 7 | 11 | 2 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
14 | 8 | 1 | 4 | 10 | 10 | 0 | 1 | 1 | 7 | 0 | 0 | 0 | 1 | 0 | 15 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
141 | 112 | 146 | 120 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
77 | 132 | 97 | 213 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
21 | 176 | 221 | 101 |
COX2 (size: 684 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
7 | 8 | 9 | 3 | 5 | 12 | 6 | 4 | 7 | 2 | 2 | 5 | 6 | 0 | 3 | 7 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
6 | 0 | 1 | 1 | 3 | 5 | 0 | 1 | 0 | 4 | 2 | 2 | 3 | 10 | 0 | 0 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
6 | 15 | 0 | 1 | 5 | 5 | 0 | 0 | 6 | 5 | 4 | 0 | 2 | 2 | 7 | 3 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
7 | 10 | 0 | 3 | 7 | 3 | 0 | 0 | 3 | 3 | 1 | 0 | 0 | 1 | 0 | 5 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
49 | 67 | 69 | 43 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
26 | 56 | 61 | 85 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
19 | 77 | 99 | 33 |
COX3 (size: 784 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
8 | 11 | 12 | 3 | 4 | 18 | 4 | 3 | 5 | 1 | 3 | 7 | 3 | 1 | 6 | 16 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
1 | 1 | 1 | 6 | 10 | 3 | 1 | 1 | 6 | 10 | 2 | 0 | 0 | 12 | 0 | 1 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
12 | 9 | 0 | 0 | 2 | 7 | 1 | 0 | 6 | 4 | 7 | 2 | 1 | 2 | 3 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
16 | 7 | 1 | 2 | 2 | 1 | 0 | 0 | 0 | 5 | 0 | 0 | 0 | 0 | 0 | 10 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
65 | 69 | 66 | 61 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
44 | 64 | 52 | 101 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
15 | 103 | 105 | 38 |
CYTB (size: 1156 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
10 | 19 | 14 | 7 | 11 | 32 | 7 | 12 | 6 | 2 | 2 | 5 | 5 | 2 | 4 | 23 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
3 | 0 | 1 | 4 | 12 | 11 | 0 | 1 | 3 | 18 | 2 | 1 | 5 | 16 | 2 | 3 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
13 | 9 | 0 | 4 | 9 | 10 | 2 | 0 | 3 | 2 | 13 | 0 | 1 | 1 | 14 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
11 | 6 | 0 | 1 | 10 | 8 | 1 | 1 | 2 | 6 | 2 | 0 | 0 | 0 | 0 | 12 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
82 | 112 | 98 | 93 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
51 | 101 | 76 | 157 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
24 | 154 | 165 | 42 |
ND1 (size: 963 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
10 | 13 | 7 | 5 | 7 | 32 | 11 | 9 | 6 | 0 | 5 | 7 | 4 | 2 | 7 | 11 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
4 | 1 | 0 | 4 | 15 | 11 | 0 | 2 | 7 | 5 | 2 | 2 | 7 | 7 | 2 | 0 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
13 | 14 | 1 | 5 | 3 | 10 | 2 | 3 | 2 | 4 | 7 | 3 | 2 | 1 | 10 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
3 | 6 | 4 | 1 | 2 | 6 | 1 | 1 | 1 | 4 | 1 | 0 | 1 | 0 | 0 | 5 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
77 | 89 | 86 | 69 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
38 | 96 | 51 | 136 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
36 | 108 | 126 | 51 |
ND2 (size: 1056 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
13 | 20 | 9 | 8 | 10 | 28 | 4 | 12 | 11 | 4 | 2 | 3 | 6 | 5 | 2 | 15 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
4 | 0 | 0 | 3 | 18 | 10 | 0 | 0 | 6 | 4 | 1 | 2 | 3 | 11 | 1 | 6 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
17 | 20 | 0 | 7 | 13 | 7 | 2 | 1 | 3 | 3 | 6 | 1 | 1 | 3 | 8 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
3 | 6 | 2 | 0 | 1 | 10 | 2 | 0 | 2 | 3 | 0 | 0 | 0 | 1 | 0 | 9 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
67 | 90 | 116 | 79 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
30 | 120 | 60 | 142 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
27 | 128 | 147 | 50 |
ND3 (size: 1056 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
13 | 20 | 9 | 8 | 10 | 28 | 4 | 12 | 11 | 4 | 2 | 3 | 6 | 5 | 2 | 15 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
4 | 0 | 0 | 3 | 18 | 10 | 0 | 0 | 6 | 4 | 1 | 2 | 3 | 11 | 1 | 6 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
17 | 20 | 0 | 7 | 13 | 7 | 2 | 1 | 3 | 3 | 6 | 1 | 1 | 3 | 8 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
3 | 6 | 2 | 0 | 1 | 10 | 2 | 0 | 2 | 3 | 0 | 0 | 0 | 1 | 0 | 9 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
67 | 90 | 116 | 79 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
30 | 120 | 60 | 142 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
27 | 128 | 147 | 50 |
ND4 (size: 1374 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
15 | 19 | 24 | 11 | 13 | 34 | 9 | 21 | 16 | 2 | 2 | 4 | 9 | 2 | 7 | 8 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
9 | 0 | 5 | 2 | 17 | 11 | 3 | 2 | 8 | 12 | 0 | 2 | 8 | 11 | 1 | 8 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
19 | 24 | 1 | 3 | 10 | 16 | 1 | 0 | 9 | 3 | 10 | 3 | 3 | 3 | 9 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
9 | 6 | 1 | 1 | 5 | 8 | 0 | 1 | 0 | 8 | 0 | 0 | 0 | 1 | 0 | 8 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
85 | 126 | 148 | 99 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
56 | 137 | 75 | 190 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
35 | 153 | 209 | 61 |
ND4L (size: 294 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
3 | 4 | 1 | 0 | 5 | 12 | 2 | 2 | 1 | 0 | 0 | 1 | 1 | 0 | 2 | 5 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 2 | 1 | 0 | 7 | 1 | 0 | 1 | 2 | 1 | 0 | 0 | 2 | 0 | 0 | 1 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
4 | 5 | 0 | 3 | 2 | 5 | 1 | 0 | 0 | 0 | 0 | 1 | 2 | 2 | 5 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
2 | 2 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
16 | 27 | 28 | 27 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
10 | 31 | 15 | 42 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
8 | 41 | 34 | 15 |
ND5 (size: 1855 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
28 | 31 | 25 | 9 | 17 | 42 | 11 | 14 | 16 | 4 | 3 | 3 | 11 | 3 | 10 | 21 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
11 | 0 | 4 | 10 | 24 | 21 | 0 | 3 | 8 | 12 | 2 | 7 | 8 | 12 | 3 | 14 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
31 | 17 | 1 | 4 | 17 | 20 | 2 | 0 | 14 | 2 | 15 | 1 | 5 | 7 | 16 | 2 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
10 | 12 | 3 | 2 | 11 | 23 | 1 | 0 | 3 | 5 | 1 | 0 | 0 | 0 | 0 | 6 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
128 | 150 | 219 | 121 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
59 | 191 | 124 | 244 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
48 | 233 | 236 | 101 |
ND6 (size: 528 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
6 | 2 | 4 | 4 | 3 | 6 | 2 | 6 | 0 | 0 | 7 | 0 | 3 | 9 | 11 | 1 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
4 | 6 | 1 | 8 | 0 | 3 | 2 | 8 | 2 | 4 | 15 | 0 | 0 | 1 | 0 | 3 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
0 | 2 | 1 | 3 | 1 | 1 | 1 | 6 | 0 | 5 | 2 | 4 | 8 | 2 | 1 | 2 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
0 | 0 | 4 | 4 | 0 | 0 | 2 | 2 | 0 | 0 | 2 | 0 | 1 | 0 | 0 | 1 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
69 | 22 | 34 | 51 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
52 | 26 | 22 | 76 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
55 | 13 | 31 | 77 |
Total protein-coding genes (size: 11445 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
133 | 168 | 146 | 72 | 93 | 271 | 72 | 113 | 89 | 19 | 41 | 39 | 75 | 29 | 77 | 143 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
56 | 10 | 16 | 46 | 142 | 104 | 6 | 22 | 59 | 101 | 30 | 20 | 48 | 119 | 14 | 47 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
140 | 152 | 5 | 38 | 72 | 107 | 13 | 12 | 54 | 33 | 82 | 23 | 28 | 33 | 97 | 15 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
77 | 73 | 18 | 18 | 54 | 79 | 10 | 6 | 16 | 45 | 7 | 0 | 2 | 8 | 0 | 77 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
857 | 983 | 1134 | 840 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
480 | 1073 | 705 | 1556 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
332 | 1300 | 1559 | 623 |