Scientific name | Caenorhabditis elegans |
Common name | Roundworm |
Maximum lifespan | 0.16 years (Caenorhabditis elegans@AnAge) |
Total mtDNA (size: 13794 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 3280 | 10514 | 1225 | 2055 | 6179 | 4335 |
Base content per 1 kb (bases) | 238 | 762 | 89 | 149 | 448 | 314 |
Base content (%) | 23.8% | 76.2% |
Total protein-coding genes (size: 10293 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 2524 | 7769 | 950 | 1574 | 4729 | 3040 |
Base content per 1 kb (bases) | 245 | 755 | 92 | 153 | 459 | 295 |
Base content (%) | 24.5% | 75.5% |
Total tRNA-coding genes (size: 1239 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 320 | 919 | 111 | 209 | 484 | 435 |
Base content per 1 kb (bases) | 258 | 742 | 90 | 169 | 391 | 351 |
Base content (%) | 25.8% | 74.2% |
Total rRNA-coding genes (size: 1650 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 383 | 1267 | 140 | 243 | 669 | 598 |
Base content per 1 kb (bases) | 232 | 768 | 85 | 147 | 405 | 362 |
Base content (%) | 23.2% | 76.8% |
12S rRNA gene (size: 697 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 183 | 514 | 68 | 115 | 264 | 250 |
Base content per 1 kb (bases) | 263 | 737 | 98 | 165 | 379 | 359 |
Base content (%) | 26.3% | 73.7% |
16S rRNA gene (size: 953 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 200 | 753 | 72 | 128 | 405 | 348 |
Base content per 1 kb (bases) | 210 | 790 | 76 | 134 | 425 | 365 |
Base content (%) | 21.0% | 79.0% |
ATP6 (size: 600 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 144 | 456 | 59 | 85 | 276 | 180 |
Base content per 1 kb (bases) | 240 | 760 | 98 | 142 | 460 | 300 |
Base content (%) | 24.0% | 76.0% |
COX1 (size: 1578 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 468 | 1110 | 180 | 288 | 668 | 442 |
Base content per 1 kb (bases) | 297 | 703 | 114 | 183 | 423 | 280 |
Base content (%) | 29.7% | 70.3% |
COX2 (size: 696 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 180 | 516 | 61 | 119 | 298 | 218 |
Base content per 1 kb (bases) | 259 | 741 | 88 | 171 | 428 | 313 |
Base content (%) | 25.9% | 74.1% |
COX3 (size: 768 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 215 | 553 | 81 | 134 | 341 | 212 |
Base content per 1 kb (bases) | 280 | 720 | 105 | 174 | 444 | 276 |
Base content (%) | 28.0% | 72.0% |
CYTB (size: 1113 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 292 | 821 | 107 | 185 | 490 | 331 |
Base content per 1 kb (bases) | 262 | 738 | 96 | 166 | 440 | 297 |
Base content (%) | 26.2% | 73.8% |
ND1 (size: 876 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 221 | 655 | 92 | 129 | 402 | 253 |
Base content per 1 kb (bases) | 252 | 748 | 105 | 147 | 459 | 289 |
Base content (%) | 25.2% | 74.8% |
ND2 (size: 849 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 168 | 681 | 69 | 99 | 415 | 266 |
Base content per 1 kb (bases) | 198 | 802 | 81 | 117 | 489 | 313 |
Base content (%) | 19.8% | 80.2% |
ND3 (size: 336 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 72 | 264 | 16 | 56 | 160 | 104 |
Base content per 1 kb (bases) | 214 | 786 | 48 | 167 | 476 | 310 |
Base content (%) | 21.4% | 78.6% |
ND4 (size: 1230 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 274 | 956 | 115 | 159 | 589 | 367 |
Base content per 1 kb (bases) | 223 | 777 | 93 | 129 | 479 | 298 |
Base content (%) | 22.3% | 77.7% |
ND4L (size: 234 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 43 | 191 | 9 | 34 | 126 | 65 |
Base content per 1 kb (bases) | 184 | 816 | 38 | 145 | 538 | 278 |
Base content (%) | 18.4% | 81.6% |
ND5 (size: 1584 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 360 | 1224 | 132 | 228 | 738 | 486 |
Base content per 1 kb (bases) | 227 | 773 | 83 | 144 | 466 | 307 |
Base content (%) | 22.7% | 77.3% |
ND6 (size: 435 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 87 | 348 | 29 | 58 | 228 | 120 |
Base content per 1 kb (bases) | 200 | 800 | 67 | 133 | 524 | 276 |
Base content (%) | 20.0% | 80.0% |
ATP6 (size: 600 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
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Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
14 | 1 | 7 | 6 | 0 | 1 | 0 | 20 | 4 | 1 | 12 | 0 | 4 | 2 | 21 | 3 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
3 | 5 | 0 | 3 | 1 | 0 | 1 | 3 | 0 | 5 | 0 | 1 | 0 | 3 | 0 | 10 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
0 | 4 | 0 | 4 | 0 | 4 | 0 | 3 | 0 | 11 | 1 | 0 | 3 | 6 | 0 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
0 | 7 | 1 | 1 | 2 | 6 | 0 | 3 | 0 | 0 | 0 | 7 | 2 | 1 | 0 | 2 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
42 | 20 | 63 | 75 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
30 | 31 | 42 | 97 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
13 | 8 | 75 | 104 |
COX1 (size: 1578 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
33 | 3 | 12 | 9 | 0 | 5 | 1 | 50 | 3 | 2 | 16 | 2 | 19 | 4 | 41 | 5 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
10 | 5 | 0 | 14 | 1 | 10 | 0 | 25 | 0 | 12 | 9 | 9 | 0 | 9 | 2 | 18 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
0 | 14 | 1 | 15 | 0 | 5 | 2 | 7 | 0 | 25 | 2 | 1 | 13 | 18 | 1 | 11 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
4 | 4 | 4 | 15 | 0 | 12 | 0 | 7 | 0 | 0 | 0 | 21 | 2 | 0 | 1 | 12 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
135 | 62 | 152 | 177 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
101 | 100 | 102 | 223 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
52 | 18 | 188 | 268 |
COX2 (size: 696 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
14 | 0 | 9 | 2 | 0 | 2 | 0 | 24 | 4 | 3 | 9 | 0 | 2 | 2 | 21 | 0 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
0 | 8 | 0 | 5 | 0 | 2 | 0 | 5 | 0 | 8 | 1 | 4 | 0 | 3 | 0 | 5 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
0 | 5 | 0 | 4 | 0 | 3 | 0 | 7 | 0 | 12 | 2 | 1 | 5 | 10 | 1 | 5 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
0 | 6 | 3 | 9 | 1 | 6 | 1 | 3 | 0 | 0 | 0 | 7 | 3 | 1 | 0 | 4 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
53 | 26 | 68 | 85 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
47 | 31 | 64 | 90 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
19 | 4 | 86 | 123 |
COX3 (size: 768 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
14 | 0 | 8 | 3 | 0 | 4 | 1 | 23 | 1 | 0 | 5 | 1 | 8 | 4 | 36 | 5 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 4 | 0 | 7 | 2 | 5 | 0 | 7 | 0 | 10 | 2 | 1 | 0 | 2 | 1 | 3 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
0 | 6 | 1 | 6 | 0 | 3 | 0 | 2 | 0 | 8 | 3 | 0 | 5 | 11 | 0 | 9 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
4 | 4 | 4 | 3 | 2 | 4 | 1 | 1 | 0 | 0 | 0 | 7 | 4 | 1 | 0 | 8 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
64 | 27 | 63 | 102 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
45 | 37 | 55 | 119 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
25 | 17 | 94 | 120 |
CYTB (size: 1113 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
29 | 3 | 13 | 1 | 0 | 2 | 0 | 42 | 2 | 2 | 14 | 1 | 11 | 3 | 42 | 1 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
5 | 2 | 2 | 10 | 1 | 7 | 0 | 13 | 0 | 1 | 7 | 4 | 1 | 6 | 2 | 7 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
2 | 11 | 1 | 6 | 0 | 2 | 0 | 2 | 0 | 17 | 2 | 0 | 11 | 13 | 0 | 5 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
2 | 3 | 4 | 5 | 2 | 13 | 0 | 2 | 0 | 1 | 0 | 14 | 6 | 1 | 0 | 12 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
82 | 30 | 119 | 140 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
62 | 60 | 71 | 178 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
41 | 17 | 141 | 172 |
ND1 (size: 876 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
26 | 5 | 11 | 7 | 0 | 2 | 0 | 29 | 5 | 0 | 14 | 0 | 7 | 1 | 37 | 0 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
3 | 3 | 0 | 7 | 2 | 3 | 1 | 3 | 0 | 6 | 3 | 1 | 2 | 5 | 0 | 2 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
1 | 3 | 1 | 9 | 1 | 7 | 0 | 4 | 1 | 13 | 3 | 0 | 5 | 7 | 1 | 2 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
0 | 8 | 4 | 4 | 0 | 8 | 1 | 6 | 0 | 0 | 1 | 11 | 3 | 1 | 0 | 2 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
63 | 31 | 88 | 110 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
43 | 45 | 57 | 147 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
23 | 16 | 108 | 145 |
ND2 (size: 849 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
33 | 0 | 6 | 3 | 1 | 4 | 0 | 29 | 5 | 0 | 10 | 1 | 8 | 1 | 41 | 2 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
3 | 2 | 0 | 0 | 0 | 2 | 0 | 5 | 0 | 2 | 1 | 0 | 0 | 2 | 2 | 6 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
2 | 8 | 0 | 7 | 2 | 5 | 0 | 1 | 2 | 11 | 1 | 3 | 13 | 18 | 3 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
1 | 4 | 2 | 1 | 0 | 10 | 2 | 0 | 0 | 0 | 0 | 10 | 2 | 1 | 0 | 5 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
37 | 18 | 106 | 122 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
33 | 36 | 59 | 155 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
29 | 15 | 101 | 138 |
ND3 (size: 849 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
33 | 0 | 6 | 3 | 1 | 4 | 0 | 29 | 5 | 0 | 10 | 1 | 8 | 1 | 41 | 2 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
3 | 2 | 0 | 0 | 0 | 2 | 0 | 5 | 0 | 2 | 1 | 0 | 0 | 2 | 2 | 6 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
2 | 8 | 0 | 7 | 2 | 5 | 0 | 1 | 2 | 11 | 1 | 3 | 13 | 18 | 3 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
1 | 4 | 2 | 1 | 0 | 10 | 2 | 0 | 0 | 0 | 0 | 10 | 2 | 1 | 0 | 5 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
37 | 18 | 106 | 122 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
33 | 36 | 59 | 155 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
29 | 15 | 101 | 138 |
ND4 (size: 1230 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
35 | 2 | 23 | 8 | 0 | 4 | 1 | 45 | 2 | 0 | 8 | 2 | 14 | 3 | 56 | 1 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
6 | 4 | 0 | 7 | 0 | 5 | 1 | 9 | 2 | 5 | 3 | 5 | 0 | 5 | 0 | 3 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
0 | 9 | 0 | 15 | 2 | 11 | 0 | 10 | 0 | 17 | 5 | 0 | 8 | 15 | 2 | 5 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
2 | 8 | 1 | 2 | 0 | 9 | 2 | 2 | 0 | 0 | 0 | 14 | 4 | 1 | 0 | 7 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
70 | 34 | 134 | 172 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
60 | 63 | 71 | 216 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
29 | 18 | 162 | 201 |
ND4L (size: 234 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: IMFLFVSLFMFIFKWQRLIFILISLEFMMLSLFLKFSYVLGEMMFFYFMCFSVISSILGMVVMVGNMKFFGSDNCIF* | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
7 | 1 | 5 | 0 | 0 | 1 | 1 | 7 | 1 | 0 | 4 | 0 | 2 | 0 | 16 | 0 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
5 | 2 | 0 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
0 | 0 | 0 | 3 | 0 | 1 | 0 | 1 | 0 | 2 | 0 | 0 | 1 | 2 | 0 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
0 | 2 | 0 | 1 | 0 | 3 | 0 | 1 | 0 | 0 | 0 | 3 | 0 | 0 | 1 | 1 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
13 | 4 | 27 | 34 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
12 | 4 | 12 | 50 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
9 | 1 | 26 | 42 |
ND5 (size: 1584 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
28 | 4 | 27 | 9 | 0 | 8 | 1 | 57 | 6 | 2 | 15 | 2 | 15 | 3 | 82 | 4 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
3 | 6 | 0 | 5 | 2 | 5 | 0 | 13 | 3 | 7 | 2 | 1 | 3 | 3 | 1 | 7 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
2 | 8 | 1 | 10 | 0 | 6 | 2 | 14 | 3 | 16 | 7 | 2 | 12 | 32 | 4 | 5 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
0 | 4 | 2 | 11 | 0 | 15 | 6 | 3 | 0 | 0 | 0 | 21 | 11 | 1 | 0 | 6 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
89 | 42 | 186 | 211 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
91 | 56 | 111 | 270 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
48 | 34 | 189 | 257 |
ND6 (size: 435 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
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Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
13 | 1 | 6 | 3 | 0 | 1 | 0 | 17 | 0 | 0 | 5 | 0 | 5 | 3 | 22 | 0 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 3 | 0 | 3 | 0 | 0 | 0 | 4 | 0 | 0 | 0 | 1 | 1 | 1 | 0 | 1 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
0 | 1 | 0 | 4 | 0 | 3 | 0 | 9 | 0 | 9 | 2 | 2 | 2 | 4 | 0 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
0 | 0 | 0 | 0 | 1 | 5 | 0 | 1 | 0 | 0 | 0 | 7 | 1 | 1 | 0 | 0 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
21 | 9 | 50 | 65 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
27 | 15 | 23 | 80 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
10 | 5 | 47 | 83 |
Total protein-coding genes (size: 10299 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
257 | 23 | 134 | 51 | 1 | 36 | 5 | 356 | 34 | 10 | 118 | 9 | 98 | 28 | 429 | 23 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
44 | 45 | 2 | 62 | 9 | 39 | 4 | 93 | 5 | 60 | 29 | 27 | 7 | 39 | 8 | 62 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
7 | 69 | 6 | 84 | 5 | 51 | 5 | 61 | 6 | 144 | 29 | 9 | 81 | 139 | 12 | 45 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
13 | 52 | 26 | 55 | 8 | 95 | 14 | 29 | 0 | 1 | 1 | 126 | 39 | 10 | 2 | 62 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
695 | 307 | 1094 | 1337 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
568 | 484 | 688 | 1693 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
311 | 159 | 1262 | 1701 |