Viewing data for Arctica islandica


Scientific name Arctica islandica
Common name Ocean quahog clam
Maximum lifespan 507.00 years (Arctica islandica@AnAge)

Total mtDNA (size: 18289 bases) GC AT G C A T
Base content (bases) 5618 12671 1981 3637 7374 5297
Base content per 1 kb (bases) 307 693 108 199 403 290
Base content (%) 30.7% 69.3%
Total protein-coding genes (size: 11747 bases) GC AT G C A T
Base content (bases) 3682 8065 1272 2410 4973 3092
Base content per 1 kb (bases) 313 687 108 205 423 263
Base content (%) 31.3% 68.7%
D-loop: No data available for this section.
Total tRNA-coding genes (size: 1416 bases) GC AT G C A T
Base content (bases) 476 940 180 296 499 441
Base content per 1 kb (bases) 336 664 127 209 352 311
Base content (%) 33.6% 66.4%
Total rRNA-coding genes (size: 2135 bases) GC AT G C A T
Base content (bases) 683 1452 252 431 701 751
Base content per 1 kb (bases) 320 680 118 202 328 352
Base content (%) 32.0% 68.0%
12S rRNA gene (size: 863 bases) GC AT G C A T
Base content (bases) 295 568 110 185 263 305
Base content per 1 kb (bases) 342 658 127 214 305 353
Base content (%) 34.2% 65.8%
16S rRNA gene (size: 1272 bases) GC AT G C A T
Base content (bases) 388 884 142 246 438 446
Base content per 1 kb (bases) 305 695 112 193 344 351
Base content (%) 30.5% 69.5%

ATP6 (size: 744 bases) GC AT G C A T
Base content (bases) 237 507 77 160 324 183
Base content per 1 kb (bases) 319 681 103 215 435 246
Base content (%) 31.9% 68.1%
ATP8: No data available for this section.
COX1 (size: 1671 bases) GC AT G C A T
Base content (bases) 575 1096 230 345 670 426
Base content per 1 kb (bases) 344 656 138 206 401 255
Base content (%) 34.4% 65.6%
COX2 (size: 1023 bases) GC AT G C A T
Base content (bases) 318 705 98 220 382 323
Base content per 1 kb (bases) 311 689 96 215 373 316
Base content (%) 31.1% 68.9%
COX3 (size: 930 bases) GC AT G C A T
Base content (bases) 312 618 108 204 396 222
Base content per 1 kb (bases) 335 665 116 219 426 239
Base content (%) 33.5% 66.5%
CYTB (size: 1120 bases) GC AT G C A T
Base content (bases) 367 753 148 219 484 269
Base content per 1 kb (bases) 328 672 132 196 432 240
Base content (%) 32.8% 67.2%
ND1 (size: 912 bases) GC AT G C A T
Base content (bases) 295 617 103 192 399 218
Base content per 1 kb (bases) 323 677 113 211 438 239
Base content (%) 32.3% 67.7%
ND2 (size: 1023 bases) GC AT G C A T
Base content (bases) 296 727 86 210 441 286
Base content per 1 kb (bases) 289 711 84 205 431 280
Base content (%) 28.9% 71.1%
ND3 (size: 411 bases) GC AT G C A T
Base content (bases) 117 294 35 82 188 106
Base content per 1 kb (bases) 285 715 85 200 457 258
Base content (%) 28.5% 71.5%
ND4 (size: 1416 bases) GC AT G C A T
Base content (bases) 439 977 156 283 605 372
Base content per 1 kb (bases) 310 690 110 200 427 263
Base content (%) 31.0% 69.0%
ND4L (size: 285 bases) GC AT G C A T
Base content (bases) 68 217 18 50 144 73
Base content per 1 kb (bases) 239 761 63 175 505 256
Base content (%) 23.9% 76.1%
ND5 (size: 1725 bases) GC AT G C A T
Base content (bases) 513 1212 175 338 736 476
Base content per 1 kb (bases) 297 703 101 196 427 276
Base content (%) 29.7% 70.3%
ND6 (size: 504 bases) GC AT G C A T
Base content (bases) 146 358 39 107 216 142
Base content per 1 kb (bases) 290 710 77 212 429 282
Base content (%) 29.0% 71.0%

ATP6 (size: 744 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (6.88%)
Alanine (Ala, A)
n = 11 (4.45%)
Serine (Ser, S)
n = 28 (11.34%)
Threonine (Thr, T)
n = 9 (3.64%)
Cysteine (Cys, C)
n = 3 (1.21%)
Valine (Val, V)
n = 26 (10.53%)
Leucine (Leu, L)
n = 31 (12.55%)
Isoleucine (Ile, I)
n = 14 (5.67%)
Methionine (Met, M)
n = 18 (7.29%)
Proline (Pro, P)
n = 5 (2.02%)
Phenylalanine (Phe, F)
n = 35 (14.17%)
Tyrosine (Tyr, Y)
n = 8 (3.24%)
Tryptophan (Trp, W)
n = 9 (3.64%)
Aspartic acid (Asp, D)
n = 3 (1.21%)
Glutamic acid (Glu, E)
n = 7 (2.83%)
Asparagine (Asn, N)
n = 5 (2.02%)
Glutamine (Gln, Q)
n = 4 (1.62%)
Histidine (His, H)
n = 5 (2.02%)
Lysine (Lys, K)
n = 5 (2.02%)
Arginine (Arg, R)
n = 4 (1.62%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 0 12 7 1 1 0 17 3 1 6 0 11 9 30 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 2 1 6 1 3 1 6 2 5 4 3 1 0 1 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 2 1 7 0 4 1 4 0 7 1 6 5 4 1 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 4 3 3 0 4 1 0 0 2 2 6 6 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
64 27 67 90
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
49 37 38 124
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
47 13 78 110
ATP8: No data available for this section.
COX1 (size: 1671 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 53 (9.53%)
Alanine (Ala, A)
n = 31 (5.58%)
Serine (Ser, S)
n = 50 (8.99%)
Threonine (Thr, T)
n = 28 (5.04%)
Cysteine (Cys, C)
n = 4 (0.72%)
Valine (Val, V)
n = 47 (8.45%)
Leucine (Leu, L)
n = 76 (13.67%)
Isoleucine (Ile, I)
n = 31 (5.58%)
Methionine (Met, M)
n = 31 (5.58%)
Proline (Pro, P)
n = 26 (4.68%)
Phenylalanine (Phe, F)
n = 51 (9.17%)
Tyrosine (Tyr, Y)
n = 19 (3.42%)
Tryptophan (Trp, W)
n = 18 (3.24%)
Aspartic acid (Asp, D)
n = 11 (1.98%)
Glutamic acid (Glu, E)
n = 9 (1.62%)
Asparagine (Asn, N)
n = 21 (3.78%)
Glutamine (Gln, Q)
n = 8 (1.44%)
Histidine (His, H)
n = 17 (3.06%)
Lysine (Lys, K)
n = 12 (2.16%)
Arginine (Arg, R)
n = 13 (2.34%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
30 1 21 12 4 4 1 40 7 1 17 2 19 9 48 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
10 4 0 17 0 11 3 16 3 20 14 18 0 3 5 18
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 4 3 18 1 4 2 6 1 17 2 4 15 17 4 13
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 7 2 6 5 7 5 4 2 5 2 13 5 1 0 14
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
151 85 148 173
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
113 110 98 236
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
81 35 180 261
COX2 (size: 1023 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (7.35%)
Alanine (Ala, A)
n = 10 (2.94%)
Serine (Ser, S)
n = 36 (10.59%)
Threonine (Thr, T)
n = 12 (3.53%)
Cysteine (Cys, C)
n = 6 (1.76%)
Valine (Val, V)
n = 34 (10.0%)
Leucine (Leu, L)
n = 41 (12.06%)
Isoleucine (Ile, I)
n = 12 (3.53%)
Methionine (Met, M)
n = 16 (4.71%)
Proline (Pro, P)
n = 9 (2.65%)
Phenylalanine (Phe, F)
n = 23 (6.76%)
Tyrosine (Tyr, Y)
n = 14 (4.12%)
Tryptophan (Trp, W)
n = 10 (2.94%)
Aspartic acid (Asp, D)
n = 17 (5.0%)
Glutamic acid (Glu, E)
n = 27 (7.94%)
Asparagine (Asn, N)
n = 19 (5.59%)
Glutamine (Gln, Q)
n = 5 (1.47%)
Histidine (His, H)
n = 7 (2.06%)
Lysine (Lys, K)
n = 13 (3.82%)
Arginine (Arg, R)
n = 4 (1.18%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 1 9 5 0 4 0 28 2 3 18 1 10 5 20 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 5 1 6 0 4 0 7 2 11 5 5 0 3 1 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 7 0 14 0 1 1 7 1 14 0 5 4 14 5 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 18 9 16 1 12 1 2 0 2 0 11 1 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
113 34 92 102
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
65 47 103 126
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
42 17 128 154
COX3 (size: 930 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (8.41%)
Alanine (Ala, A)
n = 16 (5.18%)
Serine (Ser, S)
n = 31 (10.03%)
Threonine (Thr, T)
n = 16 (5.18%)
Cysteine (Cys, C)
n = 5 (1.62%)
Valine (Val, V)
n = 32 (10.36%)
Leucine (Leu, L)
n = 40 (12.94%)
Isoleucine (Ile, I)
n = 19 (6.15%)
Methionine (Met, M)
n = 8 (2.59%)
Proline (Pro, P)
n = 6 (1.94%)
Phenylalanine (Phe, F)
n = 32 (10.36%)
Tyrosine (Tyr, Y)
n = 12 (3.88%)
Tryptophan (Trp, W)
n = 16 (5.18%)
Aspartic acid (Asp, D)
n = 7 (2.27%)
Glutamic acid (Glu, E)
n = 7 (2.27%)
Asparagine (Asn, N)
n = 9 (2.91%)
Glutamine (Gln, Q)
n = 1 (0.32%)
Histidine (His, H)
n = 14 (4.53%)
Lysine (Lys, K)
n = 6 (1.94%)
Arginine (Arg, R)
n = 6 (1.94%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
18 1 3 4 0 2 1 23 1 0 16 1 11 4 26 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 3 2 13 0 3 0 9 2 6 9 3 1 2 0 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 8 0 10 2 2 1 5 0 10 2 5 10 8 1 14
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 6 1 4 3 4 2 0 0 2 4 6 5 1 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
88 34 74 114
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
69 53 57 131
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
47 21 91 151
CYTB (size: 1119 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 30 (8.06%)
Alanine (Ala, A)
n = 18 (4.84%)
Serine (Ser, S)
n = 34 (9.14%)
Threonine (Thr, T)
n = 11 (2.96%)
Cysteine (Cys, C)
n = 9 (2.42%)
Valine (Val, V)
n = 34 (9.14%)
Leucine (Leu, L)
n = 47 (12.63%)
Isoleucine (Ile, I)
n = 27 (7.26%)
Methionine (Met, M)
n = 20 (5.38%)
Proline (Pro, P)
n = 22 (5.91%)
Phenylalanine (Phe, F)
n = 39 (10.48%)
Tyrosine (Tyr, Y)
n = 15 (4.03%)
Tryptophan (Trp, W)
n = 11 (2.96%)
Aspartic acid (Asp, D)
n = 11 (2.96%)
Glutamic acid (Glu, E)
n = 6 (1.61%)
Asparagine (Asn, N)
n = 11 (2.96%)
Glutamine (Gln, Q)
n = 7 (1.88%)
Histidine (His, H)
n = 10 (2.69%)
Lysine (Lys, K)
n = 4 (1.08%)
Arginine (Arg, R)
n = 6 (1.61%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
26 1 17 8 1 5 3 21 3 4 16 1 13 4 36 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 8 1 13 3 1 1 13 1 9 7 16 1 4 1 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 2 0 8 0 4 1 7 0 11 4 2 9 9 2 8
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 3 3 10 1 3 1 1 0 5 0 10 4 1 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
99 62 94 118
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
77 64 65 167
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
43 22 110 198
ND1 (size: 912 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 23 (7.59%)
Alanine (Ala, A)
n = 17 (5.61%)
Serine (Ser, S)
n = 29 (9.57%)
Threonine (Thr, T)
n = 3 (0.99%)
Cysteine (Cys, C)
n = 9 (2.97%)
Valine (Val, V)
n = 32 (10.56%)
Leucine (Leu, L)
n = 48 (15.84%)
Isoleucine (Ile, I)
n = 11 (3.63%)
Methionine (Met, M)
n = 17 (5.61%)
Proline (Pro, P)
n = 8 (2.64%)
Phenylalanine (Phe, F)
n = 39 (12.87%)
Tyrosine (Tyr, Y)
n = 11 (3.63%)
Tryptophan (Trp, W)
n = 7 (2.31%)
Aspartic acid (Asp, D)
n = 6 (1.98%)
Glutamic acid (Glu, E)
n = 13 (4.29%)
Asparagine (Asn, N)
n = 7 (2.31%)
Glutamine (Gln, Q)
n = 5 (1.65%)
Histidine (His, H)
n = 1 (0.33%)
Lysine (Lys, K)
n = 8 (2.64%)
Arginine (Arg, R)
n = 9 (2.97%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 1 13 12 0 5 0 28 4 1 11 4 12 5 37 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 8 1 12 3 1 1 8 1 6 8 4 2 2 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 2 0 9 0 5 0 3 2 8 3 4 3 7 0 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 9 4 4 2 7 1 5 0 4 0 3 7 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
91 40 61 112
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
63 42 52 147
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
38 21 105 140
ND2 (size: 1023 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 28 (8.24%)
Alanine (Ala, A)
n = 10 (2.94%)
Serine (Ser, S)
n = 45 (13.24%)
Threonine (Thr, T)
n = 10 (2.94%)
Cysteine (Cys, C)
n = 9 (2.65%)
Valine (Val, V)
n = 33 (9.71%)
Leucine (Leu, L)
n = 61 (17.94%)
Isoleucine (Ile, I)
n = 29 (8.53%)
Methionine (Met, M)
n = 31 (9.12%)
Proline (Pro, P)
n = 7 (2.06%)
Phenylalanine (Phe, F)
n = 28 (8.24%)
Tyrosine (Tyr, Y)
n = 9 (2.65%)
Tryptophan (Trp, W)
n = 8 (2.35%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 7 (2.06%)
Asparagine (Asn, N)
n = 8 (2.35%)
Glutamine (Gln, Q)
n = 6 (1.76%)
Histidine (His, H)
n = 3 (0.88%)
Lysine (Lys, K)
n = 5 (1.47%)
Arginine (Arg, R)
n = 2 (0.59%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
26 3 24 8 2 4 1 33 2 4 12 0 17 4 26 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 8 1 6 0 2 2 10 0 11 7 6 0 1 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 5 0 8 0 4 3 8 0 9 0 3 13 7 1 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 5 2 1 0 4 1 1 1 0 0 15 7 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
79 33 113 116
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
77 42 40 182
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
54 11 133 143
ND3 (size: 1023 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 28 (8.24%)
Alanine (Ala, A)
n = 10 (2.94%)
Serine (Ser, S)
n = 45 (13.24%)
Threonine (Thr, T)
n = 10 (2.94%)
Cysteine (Cys, C)
n = 9 (2.65%)
Valine (Val, V)
n = 33 (9.71%)
Leucine (Leu, L)
n = 61 (17.94%)
Isoleucine (Ile, I)
n = 29 (8.53%)
Methionine (Met, M)
n = 31 (9.12%)
Proline (Pro, P)
n = 7 (2.06%)
Phenylalanine (Phe, F)
n = 28 (8.24%)
Tyrosine (Tyr, Y)
n = 9 (2.65%)
Tryptophan (Trp, W)
n = 8 (2.35%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 7 (2.06%)
Asparagine (Asn, N)
n = 8 (2.35%)
Glutamine (Gln, Q)
n = 6 (1.76%)
Histidine (His, H)
n = 3 (0.88%)
Lysine (Lys, K)
n = 5 (1.47%)
Arginine (Arg, R)
n = 2 (0.59%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
26 3 24 8 2 4 1 33 2 4 12 0 17 4 26 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 8 1 6 0 2 2 10 0 11 7 6 0 1 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 5 0 8 0 4 3 8 0 9 0 3 13 7 1 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 5 2 1 0 4 1 1 1 0 0 15 7 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
79 33 113 116
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
77 42 40 182
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
54 11 133 143
ND4 (size: 1416 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 39 (8.28%)
Alanine (Ala, A)
n = 21 (4.46%)
Serine (Ser, S)
n = 55 (11.68%)
Threonine (Thr, T)
n = 9 (1.91%)
Cysteine (Cys, C)
n = 20 (4.25%)
Valine (Val, V)
n = 39 (8.28%)
Leucine (Leu, L)
n = 75 (15.92%)
Isoleucine (Ile, I)
n = 25 (5.31%)
Methionine (Met, M)
n = 40 (8.49%)
Proline (Pro, P)
n = 14 (2.97%)
Phenylalanine (Phe, F)
n = 41 (8.7%)
Tyrosine (Tyr, Y)
n = 21 (4.46%)
Tryptophan (Trp, W)
n = 14 (2.97%)
Aspartic acid (Asp, D)
n = 9 (1.91%)
Glutamic acid (Glu, E)
n = 9 (1.91%)
Asparagine (Asn, N)
n = 10 (2.12%)
Glutamine (Gln, Q)
n = 5 (1.06%)
Histidine (His, H)
n = 5 (1.06%)
Lysine (Lys, K)
n = 15 (3.18%)
Arginine (Arg, R)
n = 5 (1.06%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
24 1 30 18 0 7 3 40 3 2 23 0 12 4 36 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
10 15 5 10 5 4 2 11 0 19 9 7 2 4 1 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 2 1 17 3 7 0 5 3 20 1 9 7 8 2 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 8 1 9 0 13 2 0 1 2 2 13 7 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
117 57 127 171
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
106 71 75 220
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
60 28 170 214
ND4L (size: 285 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 7 (7.45%)
Alanine (Ala, A)
n = 1 (1.06%)
Serine (Ser, S)
n = 12 (12.77%)
Threonine (Thr, T)
n = 3 (3.19%)
Cysteine (Cys, C)
n = 3 (3.19%)
Valine (Val, V)
n = 10 (10.64%)
Leucine (Leu, L)
n = 18 (19.15%)
Isoleucine (Ile, I)
n = 6 (6.38%)
Methionine (Met, M)
n = 3 (3.19%)
Proline (Pro, P)
n = 0 (0%)
Phenylalanine (Phe, F)
n = 18 (19.15%)
Tyrosine (Tyr, Y)
n = 1 (1.06%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 3 (3.19%)
Asparagine (Asn, N)
n = 1 (1.06%)
Glutamine (Gln, Q)
n = 1 (1.06%)
Histidine (His, H)
n = 2 (2.13%)
Lysine (Lys, K)
n = 4 (4.26%)
Arginine (Arg, R)
n = 1 (1.06%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
6 0 3 2 0 1 0 13 0 1 3 0 5 2 17 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
0 3 0 0 0 0 1 4 0 3 0 0 0 0 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 0 0 4 0 1 0 0 1 1 0 0 2 1 0 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 3 0 0 0 2 2 0 0 1 0 4 2 0 1 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
21 7 24 43
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
18 9 13 55
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
11 2 36 46
ND5 (size: 1725 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 45 (7.84%)
Alanine (Ala, A)
n = 25 (4.36%)
Serine (Ser, S)
n = 79 (13.76%)
Threonine (Thr, T)
n = 15 (2.61%)
Cysteine (Cys, C)
n = 8 (1.39%)
Valine (Val, V)
n = 51 (8.89%)
Leucine (Leu, L)
n = 88 (15.33%)
Isoleucine (Ile, I)
n = 39 (6.79%)
Methionine (Met, M)
n = 42 (7.32%)
Proline (Pro, P)
n = 12 (2.09%)
Phenylalanine (Phe, F)
n = 70 (12.2%)
Tyrosine (Tyr, Y)
n = 12 (2.09%)
Tryptophan (Trp, W)
n = 14 (2.44%)
Aspartic acid (Asp, D)
n = 7 (1.22%)
Glutamic acid (Glu, E)
n = 15 (2.61%)
Asparagine (Asn, N)
n = 10 (1.74%)
Glutamine (Gln, Q)
n = 8 (1.39%)
Histidine (His, H)
n = 5 (0.87%)
Lysine (Lys, K)
n = 23 (4.01%)
Arginine (Arg, R)
n = 6 (1.05%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
35 4 36 8 2 5 2 55 6 2 21 1 19 10 59 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 7 1 12 1 10 2 7 3 23 12 8 1 2 1 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 3 0 27 3 8 0 11 0 9 3 5 16 9 1 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 11 4 5 2 17 6 0 1 3 2 18 12 0 1 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
143 48 170 214
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
114 90 81 290
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
81 37 225 232
ND6 (size: 504 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (10.78%)
Alanine (Ala, A)
n = 6 (3.59%)
Serine (Ser, S)
n = 16 (9.58%)
Threonine (Thr, T)
n = 4 (2.4%)
Cysteine (Cys, C)
n = 3 (1.8%)
Valine (Val, V)
n = 19 (11.38%)
Leucine (Leu, L)
n = 26 (15.57%)
Isoleucine (Ile, I)
n = 18 (10.78%)
Methionine (Met, M)
n = 7 (4.19%)
Proline (Pro, P)
n = 4 (2.4%)
Phenylalanine (Phe, F)
n = 15 (8.98%)
Tyrosine (Tyr, Y)
n = 6 (3.59%)
Tryptophan (Trp, W)
n = 2 (1.2%)
Aspartic acid (Asp, D)
n = 2 (1.2%)
Glutamic acid (Glu, E)
n = 4 (2.4%)
Asparagine (Asn, N)
n = 3 (1.8%)
Glutamine (Gln, Q)
n = 2 (1.2%)
Histidine (His, H)
n = 1 (0.6%)
Lysine (Lys, K)
n = 10 (5.99%)
Arginine (Arg, R)
n = 1 (0.6%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
16 2 4 3 0 0 0 17 1 1 9 1 6 3 14 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 2 1 3 0 3 0 5 0 7 6 2 1 1 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 2 0 3 0 3 1 3 0 5 1 0 6 3 0 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 3 1 2 0 7 3 1 0 0 0 5 1 1 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
49 11 51 57
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
33 21 29 85
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
25 7 62 74
Total protein-coding genes (size: 11763 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 319 (8.14%)
Alanine (Ala, A)
n = 172 (4.39%)
Serine (Ser, S)
n = 426 (10.87%)
Threonine (Thr, T)
n = 123 (3.14%)
Cysteine (Cys, C)
n = 82 (2.09%)
Valine (Val, V)
n = 369 (9.41%)
Leucine (Leu, L)
n = 577 (14.72%)
Isoleucine (Ile, I)
n = 237 (6.05%)
Methionine (Met, M)
n = 242 (6.17%)
Proline (Pro, P)
n = 116 (2.96%)
Phenylalanine (Phe, F)
n = 408 (10.41%)
Tyrosine (Tyr, Y)
n = 132 (3.37%)
Tryptophan (Trp, W)
n = 112 (2.86%)
Aspartic acid (Asp, D)
n = 79 (2.02%)
Glutamic acid (Glu, E)
n = 112 (2.86%)
Asparagine (Asn, N)
n = 107 (2.73%)
Glutamine (Gln, Q)
n = 54 (1.38%)
Histidine (His, H)
n = 71 (1.81%)
Lysine (Lys, K)
n = 111 (2.83%)
Arginine (Arg, R)
n = 60 (1.53%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
221 16 178 91 10 40 11 328 34 20 159 11 138 61 365 43
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
64 68 14 102 13 44 13 99 14 122 84 74 10 22 10 72
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 38 5 128 9 43 11 62 9 115 17 44 97 90 17 63
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 80 32 65 14 85 26 15 5 27 13 107 57 9 3 68
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
1051 453 1055 1362
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
808 602 678 1833
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
551 218 1363 1789

Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.