Scientific name | Axis axis |
Common name | Chital |
Maximum lifespan | 20.80 years (Axis axis@AnAge) |
Total mtDNA (size: 16349 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 6088 | 10261 | 3924 | 2164 | 4790 | 5471 |
Base content per 1 kb (bases) | 372 | 628 | 240 | 132 | 293 | 335 |
Base content (%) | 37.2% | 62.8% |
Total protein-coding genes (size: 11338 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 4201 | 7137 | 2859 | 1342 | 3444 | 3693 |
Base content per 1 kb (bases) | 371 | 629 | 252 | 118 | 304 | 326 |
Base content (%) | 37.1% | 62.9% |
Total tRNA-coding genes (size: 1515 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 546 | 969 | 310 | 236 | 428 | 541 |
Base content per 1 kb (bases) | 360 | 640 | 205 | 156 | 283 | 357 |
Base content (%) | 36.0% | 64.0% |
Total rRNA-coding genes (size: 2525 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 964 | 1561 | 522 | 442 | 619 | 942 |
Base content per 1 kb (bases) | 382 | 618 | 207 | 175 | 245 | 373 |
Base content (%) | 38.2% | 61.8% |
12S rRNA gene (size: 955 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 379 | 576 | 208 | 171 | 230 | 346 |
Base content per 1 kb (bases) | 397 | 603 | 218 | 179 | 241 | 362 |
Base content (%) | 39.7% | 60.3% |
16S rRNA gene (size: 1570 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 585 | 985 | 314 | 271 | 389 | 596 |
Base content per 1 kb (bases) | 373 | 627 | 200 | 173 | 248 | 380 |
Base content (%) | 37.3% | 62.7% |
ATP6 (size: 681 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 249 | 432 | 170 | 79 | 215 | 217 |
Base content per 1 kb (bases) | 366 | 634 | 250 | 116 | 316 | 319 |
Base content (%) | 36.6% | 63.4% |
ATP8 (size: 201 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 59 | 142 | 48 | 11 | 58 | 84 |
Base content per 1 kb (bases) | 294 | 706 | 239 | 55 | 289 | 418 |
Base content (%) | 29.4% | 70.6% |
COX1 (size: 1545 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 583 | 962 | 332 | 251 | 514 | 448 |
Base content per 1 kb (bases) | 377 | 623 | 215 | 162 | 333 | 290 |
Base content (%) | 37.7% | 62.3% |
COX2 (size: 684 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 254 | 430 | 158 | 96 | 193 | 237 |
Base content per 1 kb (bases) | 371 | 629 | 231 | 140 | 282 | 346 |
Base content (%) | 37.1% | 62.9% |
COX3 (size: 784 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 320 | 464 | 210 | 110 | 244 | 220 |
Base content per 1 kb (bases) | 408 | 592 | 268 | 140 | 311 | 281 |
Base content (%) | 40.8% | 59.2% |
CYTB (size: 1140 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 438 | 702 | 292 | 146 | 347 | 355 |
Base content per 1 kb (bases) | 384 | 616 | 256 | 128 | 304 | 311 |
Base content (%) | 38.4% | 61.6% |
ND1 (size: 956 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 362 | 594 | 252 | 110 | 291 | 303 |
Base content per 1 kb (bases) | 379 | 621 | 264 | 115 | 304 | 317 |
Base content (%) | 37.9% | 62.1% |
ND2 (size: 1042 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 364 | 678 | 274 | 90 | 293 | 385 |
Base content per 1 kb (bases) | 349 | 651 | 263 | 86 | 281 | 369 |
Base content (%) | 34.9% | 65.1% |
ND3 (size: 346 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 137 | 209 | 95 | 42 | 103 | 106 |
Base content per 1 kb (bases) | 396 | 604 | 275 | 121 | 298 | 306 |
Base content (%) | 39.6% | 60.4% |
ND4 (size: 1378 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 505 | 873 | 366 | 139 | 424 | 449 |
Base content per 1 kb (bases) | 366 | 634 | 266 | 101 | 308 | 326 |
Base content (%) | 36.6% | 63.4% |
ND4L (size: 297 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 98 | 199 | 61 | 37 | 106 | 93 |
Base content per 1 kb (bases) | 330 | 670 | 205 | 125 | 357 | 313 |
Base content (%) | 33.0% | 67.0% |
ND5 (size: 1821 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 661 | 1160 | 466 | 195 | 556 | 604 |
Base content per 1 kb (bases) | 363 | 637 | 256 | 107 | 305 | 332 |
Base content (%) | 36.3% | 63.7% |
ND6 (size: 528 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 189 | 339 | 147 | 42 | 123 | 216 |
Base content per 1 kb (bases) | 358 | 642 | 278 | 80 | 233 | 409 |
Base content (%) | 35.8% | 64.2% |
ATP6 (size: 681 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
16 | 6 | 14 | 8 | 6 | 15 | 3 | 8 | 9 | 0 | 4 | 1 | 7 | 0 | 12 | 2 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
1 | 0 | 0 | 4 | 8 | 7 | 0 | 1 | 3 | 7 | 1 | 2 | 2 | 8 | 0 | 7 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
3 | 11 | 0 | 2 | 2 | 5 | 0 | 2 | 3 | 1 | 1 | 0 | 2 | 9 | 2 | 2 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
4 | 3 | 0 | 0 | 1 | 3 | 1 | 1 | 2 | 1 | 0 | 0 | 0 | 1 | 0 | 3 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
47 | 63 | 78 | 39 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
24 | 61 | 37 | 105 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
8 | 46 | 102 | 71 |
ATP8 (size: 201 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MPQLDTSTWLMMIMSMFLTLFIIFQLKISKHNFYFNPEPTLAKTQKQNTPWETKWTKIYLPLLLPQ* | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
4 | 1 | 4 | 2 | 1 | 3 | 0 | 3 | 5 | 0 | 0 | 0 | 0 | 0 | 2 | 3 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 1 | 2 | 1 | 1 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
1 | 5 | 1 | 0 | 1 | 2 | 0 | 0 | 0 | 2 | 0 | 0 | 1 | 2 | 1 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
1 | 2 | 0 | 0 | 1 | 6 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 3 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
4 | 18 | 27 | 18 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
3 | 18 | 21 | 25 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
4 | 12 | 36 | 15 |
COX1 (size: 1545 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
29 | 11 | 26 | 10 | 3 | 14 | 6 | 23 | 6 | 0 | 10 | 5 | 21 | 1 | 23 | 19 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
7 | 0 | 1 | 14 | 9 | 13 | 3 | 10 | 12 | 21 | 4 | 13 | 4 | 10 | 1 | 9 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
5 | 22 | 1 | 8 | 6 | 14 | 0 | 1 | 2 | 13 | 6 | 0 | 3 | 13 | 6 | 9 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
8 | 9 | 1 | 7 | 8 | 9 | 0 | 0 | 3 | 5 | 0 | 0 | 0 | 1 | 0 | 17 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
148 | 92 | 141 | 134 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
76 | 132 | 96 | 211 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
27 | 108 | 211 | 169 |
COX2 (size: 684 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
10 | 7 | 12 | 2 | 3 | 15 | 4 | 10 | 4 | 2 | 5 | 2 | 6 | 0 | 2 | 4 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
4 | 0 | 2 | 4 | 1 | 3 | 0 | 2 | 1 | 5 | 0 | 1 | 4 | 8 | 0 | 4 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
0 | 13 | 1 | 5 | 4 | 5 | 2 | 1 | 4 | 8 | 3 | 0 | 0 | 4 | 2 | 5 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
2 | 12 | 3 | 3 | 7 | 5 | 0 | 0 | 1 | 5 | 0 | 0 | 0 | 1 | 0 | 5 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
54 | 56 | 67 | 51 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
26 | 55 | 61 | 86 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
16 | 47 | 109 | 56 |
COX3 (size: 784 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
10 | 8 | 8 | 7 | 2 | 11 | 0 | 11 | 7 | 0 | 2 | 6 | 5 | 0 | 12 | 12 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
1 | 0 | 2 | 6 | 6 | 2 | 0 | 1 | 10 | 6 | 3 | 1 | 5 | 6 | 0 | 7 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
5 | 12 | 1 | 5 | 2 | 7 | 1 | 2 | 2 | 4 | 7 | 1 | 1 | 5 | 3 | 7 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
10 | 7 | 1 | 1 | 2 | 2 | 0 | 1 | 1 | 3 | 0 | 0 | 0 | 0 | 0 | 11 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
58 | 61 | 66 | 76 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
43 | 66 | 56 | 96 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
9 | 83 | 98 | 71 |
CYTB (size: 1140 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
29 | 15 | 13 | 8 | 11 | 24 | 2 | 10 | 5 | 1 | 4 | 6 | 4 | 3 | 15 | 13 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
3 | 1 | 3 | 3 | 2 | 18 | 0 | 3 | 4 | 17 | 0 | 3 | 6 | 14 | 0 | 3 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
7 | 14 | 1 | 4 | 5 | 11 | 0 | 0 | 3 | 7 | 8 | 2 | 1 | 7 | 11 | 3 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
8 | 6 | 0 | 6 | 5 | 9 | 0 | 0 | 1 | 7 | 0 | 1 | 0 | 0 | 0 | 10 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
81 | 93 | 116 | 90 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
52 | 91 | 76 | 161 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
13 | 108 | 163 | 96 |
ND1 (size: 956 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
23 | 10 | 16 | 3 | 8 | 29 | 0 | 14 | 7 | 0 | 1 | 4 | 8 | 1 | 14 | 8 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
3 | 0 | 1 | 2 | 10 | 16 | 0 | 1 | 5 | 4 | 2 | 7 | 8 | 6 | 1 | 1 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
3 | 14 | 0 | 3 | 8 | 9 | 0 | 1 | 2 | 6 | 5 | 0 | 0 | 6 | 7 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
2 | 10 | 1 | 1 | 2 | 7 | 0 | 1 | 1 | 5 | 1 | 0 | 0 | 0 | 0 | 9 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
68 | 80 | 93 | 77 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
33 | 88 | 55 | 142 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
9 | 84 | 154 | 71 |
ND2 (size: 1042 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
17 | 19 | 34 | 5 | 9 | 31 | 0 | 9 | 10 | 0 | 6 | 3 | 4 | 0 | 8 | 6 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
8 | 0 | 0 | 1 | 7 | 7 | 1 | 1 | 4 | 9 | 0 | 3 | 7 | 11 | 0 | 5 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
13 | 19 | 0 | 4 | 4 | 18 | 0 | 0 | 2 | 6 | 2 | 1 | 1 | 4 | 12 | 3 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
2 | 5 | 0 | 1 | 0 | 12 | 1 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 9 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
49 | 84 | 146 | 68 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
29 | 100 | 58 | 160 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
12 | 90 | 181 | 64 |
ND3 (size: 1042 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
17 | 19 | 34 | 5 | 9 | 31 | 0 | 9 | 10 | 0 | 6 | 3 | 4 | 0 | 8 | 6 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
8 | 0 | 0 | 1 | 7 | 7 | 1 | 1 | 4 | 9 | 0 | 3 | 7 | 11 | 0 | 5 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
13 | 19 | 0 | 4 | 4 | 18 | 0 | 0 | 2 | 6 | 2 | 1 | 1 | 4 | 12 | 3 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
2 | 5 | 0 | 1 | 0 | 12 | 1 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 9 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
49 | 84 | 146 | 68 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
29 | 100 | 58 | 160 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
12 | 90 | 181 | 64 |
ND4 (size: 1378 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
28 | 12 | 31 | 13 | 17 | 40 | 2 | 19 | 11 | 0 | 2 | 5 | 9 | 0 | 11 | 11 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
6 | 0 | 3 | 7 | 9 | 10 | 0 | 2 | 8 | 7 | 1 | 4 | 8 | 8 | 0 | 7 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
10 | 19 | 0 | 5 | 12 | 12 | 1 | 2 | 9 | 14 | 3 | 1 | 1 | 10 | 13 | 6 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
5 | 9 | 0 | 0 | 3 | 11 | 0 | 0 | 2 | 8 | 0 | 0 | 0 | 0 | 0 | 12 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
72 | 124 | 158 | 105 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
55 | 112 | 85 | 207 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
12 | 130 | 206 | 111 |
ND4L (size: 297 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
4 | 0 | 10 | 3 | 2 | 7 | 0 | 11 | 2 | 0 | 2 | 1 | 4 | 0 | 2 | 2 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 0 | 3 | 0 | 3 | 6 | 0 | 1 | 0 | 2 | 1 | 0 | 1 | 0 | 0 | 1 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
1 | 2 | 1 | 3 | 3 | 2 | 0 | 1 | 0 | 2 | 2 | 0 | 0 | 5 | 0 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
2 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
23 | 18 | 27 | 31 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
9 | 23 | 17 | 50 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
5 | 20 | 49 | 25 |
ND5 (size: 1821 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
43 | 23 | 40 | 12 | 13 | 36 | 8 | 15 | 18 | 1 | 2 | 2 | 8 | 0 | 24 | 26 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
5 | 0 | 4 | 8 | 13 | 19 | 1 | 6 | 8 | 14 | 0 | 3 | 13 | 10 | 0 | 12 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
12 | 26 | 2 | 10 | 12 | 11 | 1 | 2 | 11 | 9 | 11 | 1 | 1 | 22 | 13 | 2 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
8 | 9 | 2 | 6 | 7 | 20 | 2 | 0 | 5 | 2 | 1 | 0 | 0 | 1 | 0 | 11 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
105 | 132 | 233 | 137 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
65 | 153 | 131 | 258 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
25 | 181 | 240 | 161 |
ND6 (size: 528 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
16 | 1 | 5 | 2 | 0 | 1 | 2 | 11 | 2 | 0 | 7 | 0 | 7 | 8 | 13 | 0 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
6 | 1 | 0 | 3 | 0 | 1 | 2 | 12 | 0 | 4 | 10 | 3 | 0 | 0 | 0 | 4 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
1 | 3 | 2 | 4 | 1 | 0 | 2 | 4 | 0 | 8 | 2 | 1 | 2 | 4 | 0 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
0 | 2 | 7 | 4 | 0 | 1 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 3 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
67 | 11 | 49 | 49 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
36 | 26 | 33 | 81 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
44 | 5 | 41 | 86 |
Total protein-coding genes (size: 11403 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
233 | 114 | 218 | 82 | 79 | 238 | 27 | 149 | 89 | 4 | 46 | 35 | 85 | 14 | 143 | 109 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
47 | 3 | 19 | 52 | 77 | 105 | 7 | 41 | 55 | 99 | 22 | 42 | 62 | 86 | 3 | 63 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
63 | 165 | 10 | 53 | 62 | 99 | 7 | 18 | 38 | 82 | 51 | 7 | 13 | 91 | 75 | 38 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
52 | 79 | 18 | 31 | 37 | 88 | 6 | 4 | 17 | 40 | 2 | 1 | 0 | 7 | 0 | 97 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
803 | 865 | 1230 | 901 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
463 | 956 | 748 | 1632 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
187 | 945 | 1645 | 1022 |