Viewing data for Cyprinus carpio


Scientific name Cyprinus carpio
Common name Common carp
Maximum lifespan 47.00 years (Cyprinus carpio@AnAge)

Total mtDNA (size: 16575 bases) GC AT G C A T
Base content (bases) 7170 9405 4551 2619 4124 5281
Base content per 1 kb (bases) 433 567 275 158 249 319
Base content (%) 43.3% 56.7%
Total protein-coding genes (size: 11393 bases) GC AT G C A T
Base content (bases) 4957 6436 3319 1638 2891 3545
Base content per 1 kb (bases) 435 565 291 144 254 311
Base content (%) 43.5% 56.5%
D-loop: No data available for this section.
Total tRNA-coding genes (size: 1560 bases) GC AT G C A T
Base content (bases) 682 878 378 304 393 485
Base content per 1 kb (bases) 437 563 242 195 252 311
Base content (%) 43.7% 56.3%
Total rRNA-coding genes (size: 2632 bases) GC AT G C A T
Base content (bases) 1192 1440 653 539 516 924
Base content per 1 kb (bases) 453 547 248 205 196 351
Base content (%) 45.3% 54.7%
12S rRNA gene (size: 951 bases) GC AT G C A T
Base content (bases) 460 491 256 204 182 309
Base content per 1 kb (bases) 484 516 269 215 191 325
Base content (%) 48.4% 51.6%
16S rRNA gene (size: 1681 bases) GC AT G C A T
Base content (bases) 732 949 397 335 334 615
Base content per 1 kb (bases) 435 565 236 199 199 366
Base content (%) 43.5% 56.5%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 284 400 193 91 187 213
Base content per 1 kb (bases) 415 585 282 133 273 311
Base content (%) 41.5% 58.5%
ATP8 (size: 165 bases) GC AT G C A T
Base content (bases) 59 106 40 19 48 58
Base content per 1 kb (bases) 358 642 242 115 291 352
Base content (%) 35.8% 64.2%
COX1 (size: 1551 bases) GC AT G C A T
Base content (bases) 686 865 413 273 440 425
Base content per 1 kb (bases) 442 558 266 176 284 274
Base content (%) 44.2% 55.8%
COX2 (size: 691 bases) GC AT G C A T
Base content (bases) 298 393 183 115 183 210
Base content per 1 kb (bases) 431 569 265 166 265 304
Base content (%) 43.1% 56.9%
COX3 (size: 786 bases) GC AT G C A T
Base content (bases) 346 440 222 124 213 227
Base content per 1 kb (bases) 440 560 282 158 271 289
Base content (%) 44.0% 56.0%
CYTB (size: 1141 bases) GC AT G C A T
Base content (bases) 503 638 342 161 299 339
Base content per 1 kb (bases) 441 559 300 141 262 297
Base content (%) 44.1% 55.9%
ND1 (size: 975 bases) GC AT G C A T
Base content (bases) 433 542 296 137 242 300
Base content per 1 kb (bases) 444 556 304 141 248 308
Base content (%) 44.4% 55.6%
ND2 (size: 1047 bases) GC AT G C A T
Base content (bases) 469 578 332 137 227 351
Base content per 1 kb (bases) 448 552 317 131 217 335
Base content (%) 44.8% 55.2%
ND3 (size: 351 bases) GC AT G C A T
Base content (bases) 153 198 103 50 94 104
Base content per 1 kb (bases) 436 564 293 142 268 296
Base content (%) 43.6% 56.4%
ND4 (size: 1381 bases) GC AT G C A T
Base content (bases) 593 788 401 192 360 428
Base content per 1 kb (bases) 429 571 290 139 261 310
Base content (%) 42.9% 57.1%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 136 161 89 47 83 78
Base content per 1 kb (bases) 458 542 300 158 279 263
Base content (%) 45.8% 54.2%
ND5 (size: 1824 bases) GC AT G C A T
Base content (bases) 774 1050 542 232 448 602
Base content per 1 kb (bases) 424 576 297 127 246 330
Base content (%) 42.4% 57.6%
ND6 (size: 519 bases) GC AT G C A T
Base content (bases) 227 292 164 63 73 219
Base content per 1 kb (bases) 437 563 316 121 141 422
Base content (%) 43.7% 56.3%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.85%)
Alanine (Ala, A)
n = 21 (9.25%)
Serine (Ser, S)
n = 7 (3.08%)
Threonine (Thr, T)
n = 18 (7.93%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 17 (7.49%)
Leucine (Leu, L)
n = 46 (20.26%)
Isoleucine (Ile, I)
n = 24 (10.57%)
Methionine (Met, M)
n = 10 (4.41%)
Proline (Pro, P)
n = 18 (7.93%)
Phenylalanine (Phe, F)
n = 11 (4.85%)
Tyrosine (Tyr, Y)
n = 5 (2.2%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 11 (4.85%)
Glutamine (Gln, Q)
n = 8 (3.52%)
Histidine (His, H)
n = 3 (1.32%)
Lysine (Lys, K)
n = 1 (0.44%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 13 7 5 8 25 3 5 8 0 3 3 10 1 7 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 6 7 8 0 1 1 8 1 2 4 11 1 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 11 1 0 0 3 0 0 4 4 1 0 0 7 4 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 4 0 0 1 1 0 0 1 4 1 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
54 76 68 30
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
26 60 34 108
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
11 57 111 49
ATP8 (size: 165 bases)
Amino acid sequence: MPQLNPGPWFAILVFSWLIFLTIIPTKILSHISPNEPTPVSAEKHKTESWDWPW*
Amino acid frequencies:
Glycine (Gly, G)
n = 1 (1.85%)
Alanine (Ala, A)
n = 2 (3.7%)
Serine (Ser, S)
n = 5 (9.26%)
Threonine (Thr, T)
n = 4 (7.41%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 2 (3.7%)
Leucine (Leu, L)
n = 5 (9.26%)
Isoleucine (Ile, I)
n = 6 (11.11%)
Methionine (Met, M)
n = 1 (1.85%)
Proline (Pro, P)
n = 8 (14.81%)
Phenylalanine (Phe, F)
n = 3 (5.56%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.26%)
Aspartic acid (Asp, D)
n = 1 (1.85%)
Glutamic acid (Glu, E)
n = 3 (5.56%)
Asparagine (Asn, N)
n = 2 (3.7%)
Glutamine (Gln, Q)
n = 1 (1.85%)
Histidine (His, H)
n = 2 (3.7%)
Lysine (Lys, K)
n = 3 (5.56%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 1 0 0 0 1 0 4 1 0 0 0 2 0 1 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 1 0 1 0 0 1 0 0 1 1 6 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 0 0 1 1 1 0 1 1 0 0 0 0 1 1 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 3 0 0 1 3 0 0 0 0 0 0 0 0 1 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
9 12 18 16
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
8 17 13 17
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
2 11 27 15
COX1 (size: 1551 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 44 (8.53%)
Alanine (Ala, A)
n = 46 (8.91%)
Serine (Ser, S)
n = 35 (6.78%)
Threonine (Thr, T)
n = 35 (6.78%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 43 (8.33%)
Leucine (Leu, L)
n = 64 (12.4%)
Isoleucine (Ile, I)
n = 38 (7.36%)
Methionine (Met, M)
n = 23 (4.46%)
Proline (Pro, P)
n = 28 (5.43%)
Phenylalanine (Phe, F)
n = 40 (7.75%)
Tyrosine (Tyr, Y)
n = 19 (3.68%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 14 (2.71%)
Glutamic acid (Glu, E)
n = 11 (2.13%)
Asparagine (Asn, N)
n = 15 (2.91%)
Glutamine (Gln, Q)
n = 8 (1.55%)
Histidine (His, H)
n = 19 (3.68%)
Lysine (Lys, K)
n = 8 (1.55%)
Arginine (Arg, R)
n = 8 (1.55%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
21 17 12 17 12 25 2 7 8 0 10 4 24 5 14 26
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
11 0 1 9 19 17 1 8 5 24 7 6 5 15 2 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 19 2 4 9 12 2 1 7 11 8 1 1 6 9 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
17 10 1 3 11 8 0 0 1 5 2 0 0 1 0 16
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
158 119 127 113
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
78 136 95 208
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
37 158 203 119
COX2 (size: 691 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.93%)
Alanine (Ala, A)
n = 18 (7.86%)
Serine (Ser, S)
n = 15 (6.55%)
Threonine (Thr, T)
n = 10 (4.37%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 21 (9.17%)
Leucine (Leu, L)
n = 29 (12.66%)
Isoleucine (Ile, I)
n = 16 (6.99%)
Methionine (Met, M)
n = 13 (5.68%)
Proline (Pro, P)
n = 14 (6.11%)
Phenylalanine (Phe, F)
n = 8 (3.49%)
Tyrosine (Tyr, Y)
n = 9 (3.93%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 12 (5.24%)
Glutamic acid (Glu, E)
n = 15 (6.55%)
Asparagine (Asn, N)
n = 6 (2.62%)
Glutamine (Gln, Q)
n = 7 (3.06%)
Histidine (His, H)
n = 10 (4.37%)
Lysine (Lys, K)
n = 5 (2.18%)
Arginine (Arg, R)
n = 6 (2.62%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 4 10 7 2 11 4 5 7 0 6 5 8 2 3 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 1 3 8 6 1 1 1 6 1 2 3 9 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 3 1 3 6 3 0 1 2 5 4 0 0 4 2 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 13 2 0 12 4 1 1 2 3 0 0 0 0 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
75 61 53 41
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 54 64 87
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 68 93 54
COX3 (size: 786 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 21 (8.05%)
Alanine (Ala, A)
n = 23 (8.81%)
Serine (Ser, S)
n = 14 (5.36%)
Threonine (Thr, T)
n = 22 (8.43%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 15 (5.75%)
Leucine (Leu, L)
n = 33 (12.64%)
Isoleucine (Ile, I)
n = 16 (6.13%)
Methionine (Met, M)
n = 8 (3.07%)
Proline (Pro, P)
n = 13 (4.98%)
Phenylalanine (Phe, F)
n = 22 (8.43%)
Tyrosine (Tyr, Y)
n = 12 (4.6%)
Tryptophan (Trp, W)
n = 12 (4.6%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 10 (3.83%)
Asparagine (Asn, N)
n = 1 (0.38%)
Glutamine (Gln, Q)
n = 9 (3.45%)
Histidine (His, H)
n = 16 (6.13%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 8 6 6 6 14 1 6 9 0 4 2 9 0 6 16
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 2 5 10 8 0 2 4 12 3 2 3 7 1 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 14 0 2 3 6 0 0 3 5 7 0 0 1 0 7
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 10 0 3 2 2 0 1 1 3 0 0 0 1 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
74 70 52 66
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 69 56 94
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
7 83 119 53
CYTB (size: 1141 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (6.6%)
Alanine (Ala, A)
n = 30 (7.92%)
Serine (Ser, S)
n = 22 (5.8%)
Threonine (Thr, T)
n = 23 (6.07%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 24 (6.33%)
Leucine (Leu, L)
n = 60 (15.83%)
Isoleucine (Ile, I)
n = 32 (8.44%)
Methionine (Met, M)
n = 13 (3.43%)
Proline (Pro, P)
n = 21 (5.54%)
Phenylalanine (Phe, F)
n = 30 (7.92%)
Tyrosine (Tyr, Y)
n = 14 (3.69%)
Tryptophan (Trp, W)
n = 13 (3.43%)
Aspartic acid (Asp, D)
n = 11 (2.9%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 17 (4.49%)
Glutamine (Gln, Q)
n = 6 (1.58%)
Histidine (His, H)
n = 12 (3.17%)
Lysine (Lys, K)
n = 10 (2.64%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
16 16 8 6 9 36 3 6 6 0 6 6 12 0 5 25
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 3 3 10 16 1 3 6 14 2 3 4 12 2 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 12 0 3 6 12 0 0 1 1 13 1 0 4 13 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 5 1 0 11 10 0 1 1 6 0 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
96 101 96 87
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
50 95 76 159
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 146 167 52
ND1 (size: 975 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.56%)
Alanine (Ala, A)
n = 34 (10.49%)
Serine (Ser, S)
n = 21 (6.48%)
Threonine (Thr, T)
n = 19 (5.86%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 21 (6.48%)
Leucine (Leu, L)
n = 62 (19.14%)
Isoleucine (Ile, I)
n = 23 (7.1%)
Methionine (Met, M)
n = 11 (3.4%)
Proline (Pro, P)
n = 24 (7.41%)
Phenylalanine (Phe, F)
n = 17 (5.25%)
Tyrosine (Tyr, Y)
n = 12 (3.7%)
Tryptophan (Trp, W)
n = 8 (2.47%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.4%)
Asparagine (Asn, N)
n = 12 (3.7%)
Glutamine (Gln, Q)
n = 7 (2.16%)
Histidine (His, H)
n = 5 (1.54%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 14 9 7 11 33 1 10 7 0 1 2 17 1 5 12
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 0 21 12 1 0 3 13 2 5 7 12 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 9 1 1 4 10 2 0 4 7 5 0 0 3 9 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 11 0 0 4 7 0 0 1 6 1 0 0 1 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
88 96 76 65
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
38 94 59 134
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
11 106 165 43
ND2 (size: 1047 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.17%)
Alanine (Ala, A)
n = 39 (11.21%)
Serine (Ser, S)
n = 23 (6.61%)
Threonine (Thr, T)
n = 49 (14.08%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 6 (1.72%)
Leucine (Leu, L)
n = 66 (18.97%)
Isoleucine (Ile, I)
n = 28 (8.05%)
Methionine (Met, M)
n = 19 (5.46%)
Proline (Pro, P)
n = 19 (5.46%)
Phenylalanine (Phe, F)
n = 9 (2.59%)
Tyrosine (Tyr, Y)
n = 8 (2.3%)
Tryptophan (Trp, W)
n = 11 (3.16%)
Aspartic acid (Asp, D)
n = 4 (1.15%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 8 (2.3%)
Glutamine (Gln, Q)
n = 14 (4.02%)
Histidine (His, H)
n = 6 (1.72%)
Lysine (Lys, K)
n = 9 (2.59%)
Arginine (Arg, R)
n = 6 (1.72%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 14 15 3 9 37 8 9 14 0 2 1 3 0 4 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 1 4 17 16 2 0 2 14 2 1 6 12 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
23 22 1 4 3 7 1 0 8 3 5 0 0 5 3 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 4 1 0 4 9 0 1 2 2 1 0 0 0 1 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
72 102 121 54
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 122 55 128
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
21 108 175 45
ND3 (size: 1047 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.17%)
Alanine (Ala, A)
n = 39 (11.21%)
Serine (Ser, S)
n = 23 (6.61%)
Threonine (Thr, T)
n = 49 (14.08%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 6 (1.72%)
Leucine (Leu, L)
n = 66 (18.97%)
Isoleucine (Ile, I)
n = 28 (8.05%)
Methionine (Met, M)
n = 19 (5.46%)
Proline (Pro, P)
n = 19 (5.46%)
Phenylalanine (Phe, F)
n = 9 (2.59%)
Tyrosine (Tyr, Y)
n = 8 (2.3%)
Tryptophan (Trp, W)
n = 11 (3.16%)
Aspartic acid (Asp, D)
n = 4 (1.15%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 8 (2.3%)
Glutamine (Gln, Q)
n = 14 (4.02%)
Histidine (His, H)
n = 6 (1.72%)
Lysine (Lys, K)
n = 9 (2.59%)
Arginine (Arg, R)
n = 6 (1.72%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 14 15 3 9 37 8 9 14 0 2 1 3 0 4 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 1 4 17 16 2 0 2 14 2 1 6 12 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
23 22 1 4 3 7 1 0 8 3 5 0 0 5 3 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 4 1 0 4 9 0 1 2 2 1 0 0 0 1 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
72 102 121 54
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 122 55 128
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
21 108 175 45
ND4 (size: 1381 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 30 (6.54%)
Alanine (Ala, A)
n = 33 (7.19%)
Serine (Ser, S)
n = 28 (6.1%)
Threonine (Thr, T)
n = 41 (8.93%)
Cysteine (Cys, C)
n = 5 (1.09%)
Valine (Val, V)
n = 18 (3.92%)
Leucine (Leu, L)
n = 89 (19.39%)
Isoleucine (Ile, I)
n = 39 (8.5%)
Methionine (Met, M)
n = 27 (5.88%)
Proline (Pro, P)
n = 27 (5.88%)
Phenylalanine (Phe, F)
n = 17 (3.7%)
Tyrosine (Tyr, Y)
n = 14 (3.05%)
Tryptophan (Trp, W)
n = 20 (4.36%)
Aspartic acid (Asp, D)
n = 2 (0.44%)
Glutamic acid (Glu, E)
n = 12 (2.61%)
Asparagine (Asn, N)
n = 12 (2.61%)
Glutamine (Gln, Q)
n = 13 (2.83%)
Histidine (His, H)
n = 12 (2.61%)
Lysine (Lys, K)
n = 10 (2.18%)
Arginine (Arg, R)
n = 11 (2.4%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
18 21 22 12 16 40 5 16 13 0 2 4 12 0 7 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 5 5 14 14 0 6 6 15 3 4 7 13 3 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 22 0 1 11 8 2 0 6 5 9 2 0 3 9 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 12 0 0 2 8 2 1 2 5 3 0 0 0 0 18
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
95 136 135 94
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
72 123 75 190
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
25 142 218 75
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 6 (6.12%)
Alanine (Ala, A)
n = 13 (13.27%)
Serine (Ser, S)
n = 9 (9.18%)
Threonine (Thr, T)
n = 8 (8.16%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 2 (2.04%)
Leucine (Leu, L)
n = 23 (23.47%)
Isoleucine (Ile, I)
n = 2 (2.04%)
Methionine (Met, M)
n = 5 (5.1%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 8 (8.16%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 3 (3.06%)
Asparagine (Asn, N)
n = 2 (2.04%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 3 (3.06%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 0 3 2 2 12 2 5 3 0 1 0 1 0 3 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 2 4 3 5 1 1 1 4 0 1 1 0 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 3 0 1 3 2 0 0 3 0 0 0 0 1 1 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 3 0 0 1 0 0 0 1 1 1 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
25 30 20 24
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
16 29 14 40
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
6 30 44 19
ND5 (size: 1824 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 32 (5.27%)
Alanine (Ala, A)
n = 53 (8.73%)
Serine (Ser, S)
n = 37 (6.1%)
Threonine (Thr, T)
n = 57 (9.39%)
Cysteine (Cys, C)
n = 5 (0.82%)
Valine (Val, V)
n = 26 (4.28%)
Leucine (Leu, L)
n = 91 (14.99%)
Isoleucine (Ile, I)
n = 58 (9.56%)
Methionine (Met, M)
n = 36 (5.93%)
Proline (Pro, P)
n = 26 (4.28%)
Phenylalanine (Phe, F)
n = 39 (6.43%)
Tyrosine (Tyr, Y)
n = 12 (1.98%)
Tryptophan (Trp, W)
n = 13 (2.14%)
Aspartic acid (Asp, D)
n = 14 (2.31%)
Glutamic acid (Glu, E)
n = 11 (1.81%)
Asparagine (Asn, N)
n = 31 (5.11%)
Glutamine (Gln, Q)
n = 20 (3.29%)
Histidine (His, H)
n = 13 (2.14%)
Lysine (Lys, K)
n = 22 (3.62%)
Arginine (Arg, R)
n = 11 (1.81%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
30 28 31 10 19 45 6 10 19 1 6 6 13 1 11 28
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 1 4 3 29 19 2 2 9 19 2 3 9 12 2 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
23 27 1 2 8 16 1 3 7 2 10 0 1 7 24 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 10 1 1 13 20 2 0 2 9 0 0 0 1 0 13
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
136 150 214 108
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
71 163 124 250
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
25 229 264 90
ND6 (size: 519 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (15.12%)
Alanine (Ala, A)
n = 18 (10.47%)
Serine (Ser, S)
n = 11 (6.4%)
Threonine (Thr, T)
n = 4 (2.33%)
Cysteine (Cys, C)
n = 2 (1.16%)
Valine (Val, V)
n = 28 (16.28%)
Leucine (Leu, L)
n = 32 (18.6%)
Isoleucine (Ile, I)
n = 4 (2.33%)
Methionine (Met, M)
n = 6 (3.49%)
Proline (Pro, P)
n = 4 (2.33%)
Phenylalanine (Phe, F)
n = 9 (5.23%)
Tyrosine (Tyr, Y)
n = 8 (4.65%)
Tryptophan (Trp, W)
n = 5 (2.91%)
Aspartic acid (Asp, D)
n = 2 (1.16%)
Glutamic acid (Glu, E)
n = 5 (2.91%)
Asparagine (Asn, N)
n = 1 (0.58%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 1 (0.58%)
Lysine (Lys, K)
n = 1 (0.58%)
Arginine (Arg, R)
n = 5 (2.91%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 0 1 7 0 0 1 15 0 0 16 0 5 7 7 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 2 0 12 2 3 1 8 3 4 11 3 0 0 1 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 0 1 6 0 1 1 3 0 6 2 3 9 1 0 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 3 2 2 0 0 1 4 0 0 1 0 0 1 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
79 18 19 57
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
41 34 19 79
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
44 11 35 83
Total protein-coding genes (size: 11412 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 248 (6.52%)
Alanine (Ala, A)
n = 338 (8.89%)
Serine (Ser, S)
n = 232 (6.1%)
Threonine (Thr, T)
n = 300 (7.89%)
Cysteine (Cys, C)
n = 25 (0.66%)
Valine (Val, V)
n = 227 (5.97%)
Leucine (Leu, L)
n = 626 (16.47%)
Isoleucine (Ile, I)
n = 294 (7.73%)
Methionine (Met, M)
n = 175 (4.6%)
Proline (Pro, P)
n = 212 (5.58%)
Phenylalanine (Phe, F)
n = 222 (5.84%)
Tyrosine (Tyr, Y)
n = 115 (3.02%)
Tryptophan (Trp, W)
n = 120 (3.16%)
Aspartic acid (Asp, D)
n = 75 (1.97%)
Glutamic acid (Glu, E)
n = 102 (2.68%)
Asparagine (Asn, N)
n = 121 (3.18%)
Glutamine (Gln, Q)
n = 99 (2.6%)
Histidine (His, H)
n = 104 (2.74%)
Lysine (Lys, K)
n = 79 (2.08%)
Arginine (Arg, R)
n = 79 (2.08%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
157 137 126 82 99 297 37 100 98 1 58 33 118 18 76 146
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
49 5 20 55 144 129 10 32 44 137 35 33 52 115 12 42
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
104 146 8 29 57 82 9 9 46 50 65 8 11 45 76 23
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
81 94 8 11 64 73 6 9 15 45 10 0 0 7 3 112
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
990 1009 1024 780
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
527 1027 705 1544
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
225 1183 1679 716

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​C​y​p​r​i​n​u​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ c​a​r​p​i​o​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​



Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.