Viewing data for Cynomys ludovicianus


Scientific name Cynomys ludovicianus
Common name Black-tailed prairie dog
Maximum lifespan 11.00 years (Cynomys ludovicianus@AnAge)

Total mtDNA (size: 16466 bases) GC AT G C A T
Base content (bases) 6154 10312 4007 2147 5055 5257
Base content per 1 kb (bases) 374 626 243 130 307 319
Base content (%) 37.4% 62.6%
Total protein-coding genes (size: 11333 bases) GC AT G C A T
Base content (bases) 4270 7063 2910 1360 3595 3468
Base content per 1 kb (bases) 377 623 257 120 317 306
Base content (%) 37.7% 62.3%
D-loop (size: 1014 bases) GC AT G C A T
Base content (bases) 387 627 260 127 314 313
Base content per 1 kb (bases) 382 618 256 125 310 309
Base content (%) 38.2% 61.8%
Total tRNA-coding genes (size: 1510 bases) GC AT G C A T
Base content (bases) 537 973 308 229 455 518
Base content per 1 kb (bases) 356 644 204 152 301 343
Base content (%) 35.6% 64.4%
Total rRNA-coding genes (size: 2533 bases) GC AT G C A T
Base content (bases) 928 1605 510 418 674 931
Base content per 1 kb (bases) 366 634 201 165 266 368
Base content (%) 36.6% 63.4%
12S rRNA gene (size: 966 bases) GC AT G C A T
Base content (bases) 370 596 207 163 245 351
Base content per 1 kb (bases) 383 617 214 169 254 363
Base content (%) 38.3% 61.7%
16S rRNA gene (size: 1567 bases) GC AT G C A T
Base content (bases) 558 1009 303 255 429 580
Base content per 1 kb (bases) 356 644 193 163 274 370
Base content (%) 35.6% 64.4%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 252 432 173 79 228 204
Base content per 1 kb (bases) 368 632 253 115 333 298
Base content (%) 36.8% 63.2%
ATP8 (size: 204 bases) GC AT G C A T
Base content (bases) 66 138 53 13 66 72
Base content per 1 kb (bases) 324 676 260 64 324 353
Base content (%) 32.4% 67.6%
COX1 (size: 1542 bases) GC AT G C A T
Base content (bases) 608 934 352 256 514 420
Base content per 1 kb (bases) 394 606 228 166 333 272
Base content (%) 39.4% 60.6%
COX2 (size: 684 bases) GC AT G C A T
Base content (bases) 261 423 168 93 205 218
Base content per 1 kb (bases) 382 618 246 136 300 319
Base content (%) 38.2% 61.8%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 326 458 205 121 248 210
Base content per 1 kb (bases) 416 584 261 154 316 268
Base content (%) 41.6% 58.4%
CYTB (size: 1140 bases) GC AT G C A T
Base content (bases) 461 679 313 148 358 321
Base content per 1 kb (bases) 404 596 275 130 314 282
Base content (%) 40.4% 59.6%
ND1 (size: 956 bases) GC AT G C A T
Base content (bases) 371 585 258 113 294 291
Base content per 1 kb (bases) 388 612 270 118 308 304
Base content (%) 38.8% 61.2%
ND2 (size: 1042 bases) GC AT G C A T
Base content (bases) 372 670 277 95 314 356
Base content per 1 kb (bases) 357 643 266 91 301 342
Base content (%) 35.7% 64.3%
ND3 (size: 347 bases) GC AT G C A T
Base content (bases) 125 222 80 45 127 95
Base content per 1 kb (bases) 360 640 231 130 366 274
Base content (%) 36.0% 64.0%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 478 900 338 140 466 434
Base content per 1 kb (bases) 347 653 245 102 338 315
Base content (%) 34.7% 65.3%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 108 189 77 31 103 86
Base content per 1 kb (bases) 364 636 259 104 347 290
Base content (%) 36.4% 63.6%
ND5 (size: 1818 bases) GC AT G C A T
Base content (bases) 675 1143 479 196 573 570
Base content per 1 kb (bases) 371 629 263 108 315 314
Base content (%) 37.1% 62.9%
ND6 (size: 525 bases) GC AT G C A T
Base content (bases) 190 335 154 36 122 213
Base content per 1 kb (bases) 362 638 293 69 232 406
Base content (%) 36.2% 63.8%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.85%)
Alanine (Ala, A)
n = 16 (7.05%)
Serine (Ser, S)
n = 14 (6.17%)
Threonine (Thr, T)
n = 21 (9.25%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 10 (4.41%)
Leucine (Leu, L)
n = 43 (18.94%)
Isoleucine (Ile, I)
n = 24 (10.57%)
Methionine (Met, M)
n = 15 (6.61%)
Proline (Pro, P)
n = 16 (7.05%)
Phenylalanine (Phe, F)
n = 14 (6.17%)
Tyrosine (Tyr, Y)
n = 2 (0.88%)
Tryptophan (Trp, W)
n = 3 (1.32%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 3 (1.32%)
Asparagine (Asn, N)
n = 9 (3.96%)
Glutamine (Gln, Q)
n = 8 (3.52%)
Histidine (His, H)
n = 7 (3.08%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 10 9 12 3 14 1 12 8 0 1 2 6 1 10 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 0 6 3 7 0 1 3 7 0 9 3 4 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 8 2 2 2 6 0 1 3 2 0 1 1 7 2 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 2 1 1 0 3 1 3 0 3 0 0 0 1 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
41 67 77 43
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
24 63 35 106
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 43 92 79
ATP8 (size: 204 bases)
Amino acid sequence: MPQLDTSTWFTTILSMILALFFMFQLKISNHFYPSNPSPKDTKLTEHKTPWEEKWTKIYLPLSLPLH*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 1 (1.49%)
Serine (Ser, S)
n = 6 (8.96%)
Threonine (Thr, T)
n = 8 (11.94%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 0 (0%)
Leucine (Leu, L)
n = 10 (14.93%)
Isoleucine (Ile, I)
n = 4 (5.97%)
Methionine (Met, M)
n = 3 (4.48%)
Proline (Pro, P)
n = 7 (10.45%)
Phenylalanine (Phe, F)
n = 5 (7.46%)
Tyrosine (Tyr, Y)
n = 2 (2.99%)
Tryptophan (Trp, W)
n = 3 (4.48%)
Aspartic acid (Asp, D)
n = 2 (2.99%)
Glutamic acid (Glu, E)
n = 3 (4.48%)
Asparagine (Asn, N)
n = 2 (2.99%)
Glutamine (Gln, Q)
n = 2 (2.99%)
Histidine (His, H)
n = 3 (4.48%)
Lysine (Lys, K)
n = 6 (8.96%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 2 2 4 0 4 0 1 2 0 0 0 0 0 4 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 1 0 0 0 0 0 0 0 4 2 0 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 3 1 2 1 3 0 0 0 1 1 0 1 2 0 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 3 0 0 2 6 0 0 0 0 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
6 20 23 19
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
3 22 21 22
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
4 11 28 25
COX1 (size: 1542 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.16%)
Alanine (Ala, A)
n = 43 (8.38%)
Serine (Ser, S)
n = 31 (6.04%)
Threonine (Thr, T)
n = 35 (6.82%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 36 (7.02%)
Leucine (Leu, L)
n = 60 (11.7%)
Isoleucine (Ile, I)
n = 39 (7.6%)
Methionine (Met, M)
n = 31 (6.04%)
Proline (Pro, P)
n = 29 (5.65%)
Phenylalanine (Phe, F)
n = 43 (8.38%)
Tyrosine (Tyr, Y)
n = 19 (3.7%)
Tryptophan (Trp, W)
n = 17 (3.31%)
Aspartic acid (Asp, D)
n = 15 (2.92%)
Glutamic acid (Glu, E)
n = 10 (1.95%)
Asparagine (Asn, N)
n = 16 (3.12%)
Glutamine (Gln, Q)
n = 6 (1.17%)
Histidine (His, H)
n = 18 (3.51%)
Lysine (Lys, K)
n = 9 (1.75%)
Arginine (Arg, R)
n = 8 (1.56%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
28 11 27 14 9 20 7 10 6 0 12 4 16 4 25 18
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 1 19 7 17 0 13 5 22 7 11 6 12 0 12
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 15 2 12 4 11 0 1 3 7 12 2 0 8 8 10
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 9 1 10 5 8 1 5 0 3 0 0 0 1 0 15
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
151 111 134 118
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
77 134 94 209
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
28 107 192 187
COX2 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 7 (3.08%)
Serine (Ser, S)
n = 21 (9.25%)
Threonine (Thr, T)
n = 19 (8.37%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 13 (5.73%)
Leucine (Leu, L)
n = 35 (15.42%)
Isoleucine (Ile, I)
n = 17 (7.49%)
Methionine (Met, M)
n = 14 (6.17%)
Proline (Pro, P)
n = 14 (6.17%)
Phenylalanine (Phe, F)
n = 6 (2.64%)
Tyrosine (Tyr, Y)
n = 10 (4.41%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 11 (4.85%)
Glutamic acid (Glu, E)
n = 15 (6.61%)
Asparagine (Asn, N)
n = 7 (3.08%)
Glutamine (Gln, Q)
n = 5 (2.2%)
Histidine (His, H)
n = 8 (3.52%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 4 11 11 5 7 4 7 5 0 7 2 4 0 5 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 1 3 3 1 0 0 2 4 2 2 3 7 2 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 11 0 5 5 7 0 0 4 6 4 0 1 3 4 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 13 2 4 7 4 0 1 0 5 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
54 60 65 49
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 57 61 85
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 51 92 71
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 20 (7.69%)
Alanine (Ala, A)
n = 15 (5.77%)
Serine (Ser, S)
n = 23 (8.85%)
Threonine (Thr, T)
n = 21 (8.08%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 18 (6.92%)
Leucine (Leu, L)
n = 35 (13.46%)
Isoleucine (Ile, I)
n = 13 (5.0%)
Methionine (Met, M)
n = 10 (3.85%)
Proline (Pro, P)
n = 10 (3.85%)
Phenylalanine (Phe, F)
n = 22 (8.46%)
Tyrosine (Tyr, Y)
n = 10 (3.85%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 4 (1.54%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 7 (2.69%)
Glutamine (Gln, Q)
n = 7 (2.69%)
Histidine (His, H)
n = 16 (6.15%)
Lysine (Lys, K)
n = 3 (1.15%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 2 9 8 7 12 0 8 5 2 5 4 7 2 11 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 2 5 6 4 0 4 6 8 2 3 3 4 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 10 1 7 4 7 1 1 3 7 3 3 0 5 2 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 7 1 1 3 3 0 1 0 4 0 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
65 65 58 73
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 65 55 98
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
13 75 97 76
CYTB (size: 1140 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (6.33%)
Alanine (Ala, A)
n = 22 (5.8%)
Serine (Ser, S)
n = 24 (6.33%)
Threonine (Thr, T)
n = 25 (6.6%)
Cysteine (Cys, C)
n = 4 (1.06%)
Valine (Val, V)
n = 24 (6.33%)
Leucine (Leu, L)
n = 59 (15.57%)
Isoleucine (Ile, I)
n = 34 (8.97%)
Methionine (Met, M)
n = 16 (4.22%)
Proline (Pro, P)
n = 22 (5.8%)
Phenylalanine (Phe, F)
n = 29 (7.65%)
Tyrosine (Tyr, Y)
n = 15 (3.96%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 11 (2.9%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 15 (3.96%)
Glutamine (Gln, Q)
n = 6 (1.58%)
Histidine (His, H)
n = 13 (3.43%)
Lysine (Lys, K)
n = 10 (2.64%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
16 18 13 19 7 19 1 12 6 0 5 9 8 2 14 15
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 4 2 10 10 0 7 6 11 0 8 5 9 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 10 0 6 4 11 0 1 2 4 11 0 1 5 10 7
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 5 1 2 9 9 1 0 3 5 0 1 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
87 95 104 94
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
52 90 76 162
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
9 128 141 102
ND1 (size: 956 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.79%)
Alanine (Ala, A)
n = 28 (8.83%)
Serine (Ser, S)
n = 18 (5.68%)
Threonine (Thr, T)
n = 29 (9.15%)
Cysteine (Cys, C)
n = 2 (0.63%)
Valine (Val, V)
n = 16 (5.05%)
Leucine (Leu, L)
n = 57 (17.98%)
Isoleucine (Ile, I)
n = 23 (7.26%)
Methionine (Met, M)
n = 22 (6.94%)
Proline (Pro, P)
n = 22 (6.94%)
Phenylalanine (Phe, F)
n = 21 (6.62%)
Tyrosine (Tyr, Y)
n = 9 (2.84%)
Tryptophan (Trp, W)
n = 9 (2.84%)
Aspartic acid (Asp, D)
n = 3 (0.95%)
Glutamic acid (Glu, E)
n = 10 (3.15%)
Asparagine (Asn, N)
n = 13 (4.1%)
Glutamine (Gln, Q)
n = 7 (2.21%)
Histidine (His, H)
n = 2 (0.63%)
Lysine (Lys, K)
n = 8 (2.52%)
Arginine (Arg, R)
n = 7 (2.21%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 12 20 8 9 20 3 17 6 1 4 4 7 1 14 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 1 10 7 11 0 1 2 8 1 5 10 6 1 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 13 0 3 8 6 0 0 1 4 5 1 0 7 6 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 8 2 1 2 7 1 2 0 5 0 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
69 78 96 75
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
31 96 52 139
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
13 84 142 79
ND2 (size: 1042 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (4.91%)
Alanine (Ala, A)
n = 15 (4.34%)
Serine (Ser, S)
n = 33 (9.54%)
Threonine (Thr, T)
n = 38 (10.98%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 8 (2.31%)
Leucine (Leu, L)
n = 61 (17.63%)
Isoleucine (Ile, I)
n = 32 (9.25%)
Methionine (Met, M)
n = 29 (8.38%)
Proline (Pro, P)
n = 19 (5.49%)
Phenylalanine (Phe, F)
n = 19 (5.49%)
Tyrosine (Tyr, Y)
n = 11 (3.18%)
Tryptophan (Trp, W)
n = 10 (2.89%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 18 (5.2%)
Glutamine (Gln, Q)
n = 9 (2.6%)
Histidine (His, H)
n = 3 (0.87%)
Lysine (Lys, K)
n = 14 (4.05%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
18 14 27 13 13 21 1 11 9 0 3 2 3 0 6 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 1 2 5 7 1 1 3 11 2 8 3 8 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
13 18 1 6 7 16 0 2 2 6 5 1 2 7 11 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 3 2 2 0 13 1 0 0 3 0 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
47 82 135 83
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
35 101 62 149
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
13 94 159 81
ND3 (size: 1042 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (4.91%)
Alanine (Ala, A)
n = 15 (4.34%)
Serine (Ser, S)
n = 33 (9.54%)
Threonine (Thr, T)
n = 38 (10.98%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 8 (2.31%)
Leucine (Leu, L)
n = 61 (17.63%)
Isoleucine (Ile, I)
n = 32 (9.25%)
Methionine (Met, M)
n = 29 (8.38%)
Proline (Pro, P)
n = 19 (5.49%)
Phenylalanine (Phe, F)
n = 19 (5.49%)
Tyrosine (Tyr, Y)
n = 11 (3.18%)
Tryptophan (Trp, W)
n = 10 (2.89%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 18 (5.2%)
Glutamine (Gln, Q)
n = 9 (2.6%)
Histidine (His, H)
n = 3 (0.87%)
Lysine (Lys, K)
n = 14 (4.05%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
18 14 27 13 13 21 1 11 9 0 3 2 3 0 6 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 1 2 5 7 1 1 3 11 2 8 3 8 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
13 18 1 6 7 16 0 2 2 6 5 1 2 7 11 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 3 2 2 0 13 1 0 0 3 0 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
47 82 135 83
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
35 101 62 149
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
13 94 159 81
ND4 (size: 1378 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (3.71%)
Alanine (Ala, A)
n = 27 (5.9%)
Serine (Ser, S)
n = 43 (9.39%)
Threonine (Thr, T)
n = 40 (8.73%)
Cysteine (Cys, C)
n = 4 (0.87%)
Valine (Val, V)
n = 12 (2.62%)
Leucine (Leu, L)
n = 86 (18.78%)
Isoleucine (Ile, I)
n = 55 (12.01%)
Methionine (Met, M)
n = 32 (6.99%)
Proline (Pro, P)
n = 24 (5.24%)
Phenylalanine (Phe, F)
n = 21 (4.59%)
Tyrosine (Tyr, Y)
n = 15 (3.28%)
Tryptophan (Trp, W)
n = 13 (2.84%)
Aspartic acid (Asp, D)
n = 3 (0.66%)
Glutamic acid (Glu, E)
n = 8 (1.75%)
Asparagine (Asn, N)
n = 18 (3.93%)
Glutamine (Gln, Q)
n = 9 (1.97%)
Histidine (His, H)
n = 12 (2.62%)
Lysine (Lys, K)
n = 10 (2.18%)
Arginine (Arg, R)
n = 10 (2.18%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
36 19 28 15 7 35 2 25 8 1 5 0 6 1 13 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 2 2 11 5 10 1 4 5 8 0 12 7 5 0 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 19 3 7 10 16 0 6 4 10 5 1 2 8 10 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 6 2 1 2 9 1 2 0 7 1 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
67 114 165 113
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
54 124 75 206
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
19 100 194 146
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 6 (6.12%)
Serine (Ser, S)
n = 10 (10.2%)
Threonine (Thr, T)
n = 4 (4.08%)
Cysteine (Cys, C)
n = 4 (4.08%)
Valine (Val, V)
n = 6 (6.12%)
Leucine (Leu, L)
n = 21 (21.43%)
Isoleucine (Ile, I)
n = 9 (9.18%)
Methionine (Met, M)
n = 9 (9.18%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 6 (6.12%)
Tyrosine (Tyr, Y)
n = 4 (4.08%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 5 (5.1%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 2 (2.04%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 1 (1.02%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 4 8 3 3 11 1 3 2 0 0 2 4 0 3 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 3 3 1 2 0 1 1 2 0 1 1 0 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 1 1 2 3 5 0 0 0 0 4 0 0 3 2 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 2 0 0 1 0 0 0 0 1 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
19 25 27 28
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
9 22 17 51
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
3 30 42 24
ND5 (size: 1818 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 27 (4.46%)
Alanine (Ala, A)
n = 35 (5.79%)
Serine (Ser, S)
n = 53 (8.76%)
Threonine (Thr, T)
n = 54 (8.93%)
Cysteine (Cys, C)
n = 6 (0.99%)
Valine (Val, V)
n = 27 (4.46%)
Leucine (Leu, L)
n = 96 (15.87%)
Isoleucine (Ile, I)
n = 52 (8.6%)
Methionine (Met, M)
n = 36 (5.95%)
Proline (Pro, P)
n = 26 (4.3%)
Phenylalanine (Phe, F)
n = 43 (7.11%)
Tyrosine (Tyr, Y)
n = 23 (3.8%)
Tryptophan (Trp, W)
n = 12 (1.98%)
Aspartic acid (Asp, D)
n = 10 (1.65%)
Glutamic acid (Glu, E)
n = 11 (1.82%)
Asparagine (Asn, N)
n = 33 (5.45%)
Glutamine (Gln, Q)
n = 15 (2.48%)
Histidine (His, H)
n = 15 (2.48%)
Lysine (Lys, K)
n = 22 (3.64%)
Arginine (Arg, R)
n = 9 (1.49%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
27 25 31 17 22 30 2 24 13 2 3 8 16 0 22 21
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 4 2 10 12 12 1 1 7 14 5 12 5 9 0 20
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
17 15 2 12 7 26 1 3 4 9 14 2 1 14 19 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 9 2 4 6 20 2 1 2 6 0 0 0 1 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
110 136 204 156
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
61 161 130 254
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
25 182 236 163
ND6 (size: 525 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (14.37%)
Alanine (Ala, A)
n = 7 (4.02%)
Serine (Ser, S)
n = 13 (7.47%)
Threonine (Thr, T)
n = 5 (2.87%)
Cysteine (Cys, C)
n = 2 (1.15%)
Valine (Val, V)
n = 23 (13.22%)
Leucine (Leu, L)
n = 22 (12.64%)
Isoleucine (Ile, I)
n = 13 (7.47%)
Methionine (Met, M)
n = 11 (6.32%)
Proline (Pro, P)
n = 3 (1.72%)
Phenylalanine (Phe, F)
n = 14 (8.05%)
Tyrosine (Tyr, Y)
n = 9 (5.17%)
Tryptophan (Trp, W)
n = 5 (2.87%)
Aspartic acid (Asp, D)
n = 4 (2.3%)
Glutamic acid (Glu, E)
n = 11 (6.32%)
Asparagine (Asn, N)
n = 3 (1.72%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 2 (1.15%)
Arginine (Arg, R)
n = 2 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 0 5 1 0 1 0 16 0 0 10 0 5 8 13 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 2 0 3 0 2 2 5 1 8 11 2 0 0 1 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 2 2 3 0 3 2 5 0 6 3 2 4 2 1 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 7 4 4 0 0 2 2 0 0 0 1 0 0 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
70 7 40 58
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
40 23 29 83
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
44 6 53 72
Total protein-coding genes (size: 11401 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 216 (5.69%)
Alanine (Ala, A)
n = 232 (6.11%)
Serine (Ser, S)
n = 296 (7.8%)
Threonine (Thr, T)
n = 303 (7.98%)
Cysteine (Cys, C)
n = 29 (0.76%)
Valine (Val, V)
n = 198 (5.21%)
Leucine (Leu, L)
n = 612 (16.12%)
Isoleucine (Ile, I)
n = 322 (8.48%)
Methionine (Met, M)
n = 235 (6.19%)
Proline (Pro, P)
n = 200 (5.27%)
Phenylalanine (Phe, F)
n = 252 (6.64%)
Tyrosine (Tyr, Y)
n = 132 (3.48%)
Tryptophan (Trp, W)
n = 105 (2.77%)
Aspartic acid (Asp, D)
n = 69 (1.82%)
Glutamic acid (Glu, E)
n = 98 (2.58%)
Asparagine (Asn, N)
n = 152 (4.0%)
Glutamine (Gln, Q)
n = 79 (2.08%)
Histidine (His, H)
n = 99 (2.61%)
Lysine (Lys, K)
n = 95 (2.5%)
Arginine (Arg, R)
n = 66 (1.74%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
201 121 197 135 87 199 24 154 73 6 56 39 84 19 144 108
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
38 11 18 80 61 85 6 39 42 104 31 81 49 65 5 79
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
81 127 16 71 56 118 4 20 27 63 69 13 13 73 79 44
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
55 79 19 31 38 84 11 17 6 42 1 2 0 6 0 92
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
813 889 1156 940
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
465 984 730 1619
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
206 936 1511 1145

>NC_026706.1 Cynomys ludovicianus mitochondrion, complete genome
GTTAATGTAGCTTAATCCAACAAAGCAAAGCACTGAAAATGCTTAGATGGGTATTTCCTACCCCATAAAC
AATAGGTTTGGTCCTAGCCTTTTCATTAGCTTCTAGTTAACTTATACATGCAAGCATCCCCGCCCCAGTG
AGAATGCCCTCTATGTCTATACTGATCAAAAGGTGCAGGCATCAAGTTCACTAACCCTAGTAGCTCACAA
CGCCTTGCTCCACCACACCCCCACGGGACACAGCAGTAATTAAAATTAAGCCTATAAACGAAAGTTTGAC
TAAGTTAAACTAAATTCAGGGTTGGTAAATTTCGTGCCAGCCACCGCGGTCATACGATTAACCCTAGTTA
ATGGAATACGGCGTAAAGCGTGATTAAGAGACTAATTAAATAAGATTAAAATAATACTAAACCGTAAAAA
GTCTTGGTATTGATAAAAATCAAATACGAAAGTAATCTTAAATTTTCTGAATTCACGATAGCTAAGACTC
AAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACATAAATATTCAACAAACAAGAATATTCGCCA
GAGTACTACTAGCAATAGCCTAAAACTCAAAGGACTTGGCGGTGCTTTACACCCCTCTAGAGGAGCCTGT
TCTATAATCGATAAACCCCGATACACCTCACCACCTTTAGCAAATATCAGCCTATATACCGCCATCTACA
GCAAACCCTAAAAAGGTCTTATAGTAAGCAAGAAAATTTTACATTAGCACGTTAGGTCAAGGTGTAGCCT
ATAAGGTGGGAAGAAATGGGCTACATTTTCTACTCTCCTAGAACAAACACTCACGATAGCTTTTATGAAA
CTTAAAGCATAAGGCGGATTTAGTAGTAAGTTAAGAATAGAGAGCTTAACTGAATAGGGCAATAAAGCAC
GCACACACCGCCCGTCACCCTCTTCAAATATCTCAATAAAATATTATAAATAATTTACTTAACCAAAGAT
ATAAGAAGAGACAAGTCGTAACAAGGTAAACATACTGGAAAGTGTGTTTGGAAGAATCAAAATGTAGCTT
ATCTACTAAAGCACTCGGCTTACACCCAAGAGATTTCATTCACTATGAACATTTTGAACTAATGCTAGCC
TAACTTCTTCCCCCTCCTAAATACTATTAACTTAATAAATAAAACATTTACCTAAATAAAGTATAGGAGA
TAGAAATTTACATCAAGAGCTATAGAGAGAGTACCGTAAGGGAAAGATGAAAGAATAAATTCATGGTATA
TAAAAGCAAAGATAAACCCTTTTACCTTTTGCATAATGATTTAACTAGAAAATGCTTGACAAAAAGAATT
TAAGCCAAACACCCCGAAACCAGACGAGCTACCTATGAGCAGCCATAAGAGCCCATCCGTCTATGTTGCA
AAATAGTGGAATGACTCATAAGTAGAGGTGAAAAGCCTACCGAGCCTGGTGATAGCTGGTTGTCCAGACT
AGAATTTTAGTTCTACTTTAAATTTACCTTAAGCACTAATAAGCCAAATGTAAACTTAAATGTTACTCTA
AAGAGGGACAGCTCTTTAGAGTTAAGGAATAAACCTTATTTAGAGAGTAAATCTATTAATTCCCATAGTT
GGCCTAAAAGCAGCCATCAATTAAAAAAGCGTTAAAGCTTAACCTACTTATCAAAACTTAATACCCAACT
CCTTTAATGACCTCCCAAATCAAATACTGGACTAATCTATTTCATAATAGAAGAAATCATGTTAAAATAA
GTAACAAGAAAATATTCTCCCTGCATAAGCTTATATCAGATCGAATGATTCACTGATAGTTAACAACCTC
ATAATATTAAACAAAATACATAACCATTATTATCTACACTGTTAACCCAACACTGGTATGCATAAAGGGA
AAGATTAAATAAAGTAAAAGGAACTCGGCAAACACTAACCTCGCCTGTTTACCAAAAACATCACCTCTAG
CATAAATAGTATTAGAGGCACTGCCTGCCCAGTGACATACGTTCAACGGCCGCGGTATCCTGACCGTGCA
AAGGTAGCATAATCACTTGTTCTTTAAATAAGGACTAGTATGAATGGCTTGACGAAGGTTTAACTGTCTC
TTACTTTTAATCAGTGAAATTGACCTTCCCGTGAAGAGGCGGGAATTTCCTAATAAGACGAGAAGACCCT
ATGGAGCTTTAATTTAATAGTCTCACAGCCCTAATTATATCTAAGGAGTTAAAAATCTTTGTTCATAGAC
TAGAAATTTTGGTTGGGGTGACCTCGGAGAATAAACTAACCTCCGAATGATAATAATCTAGACACTACAA
GTCCAAATTACAATTCATTAATTGACCCAAATTATTGATCAACGGAACAAGTTACCCTAGGGATAACAGC
GCAATCCTATTCAAGAGTCCATATCGACAATTAGGGTTTACGACCTCGATGTTGGATCAGGACATCCAAA
TGGTGTAACCGCTATTAATGGTTCGTTTGTTCAACGATTAAAGTCCTACGTGATCTGAGTTCAGACCGGA
GAAATCCAGGTCGGTTTCTATCTATTACTATATTTCTCCCAGTACGAAAGGACAAGAGAAATGAGGCCAA
TTACACAATCATGCCTTAAATTAATGGATGAAACAATCTTAATCCAATAAAATATTTAAAATAATCTGCC
CTAGAAAAGGGCTTGTTAAGATGGCAGAGCCTGGCTAATTGCGTAAGACTTAAAATCTTATTTCAGAGGT
TCAACTCCTCTTCTTAATATTAATGTTCATAATTAACCTTCTACTTTTAATCGTCCCAATCTTAGTAGCT
ATAGCTTTCCTTACCCTAATCGAACGAAAAATATTAGGATATATACAACTTCGTAAAGGCCCTAATGTTG
TCGGACCTTACGGCCTACTCCAACCATTTGCTGACGCAATAAAACTATTTGTTAAAGAACCCATAAAGCC
CCTGACATCCTCTATTATACTATTTATTATTGCCCCAACCCTTGCTCTAACACTGGCCTTTACCATATGA
ATCCCCCTACCCATACCCACACCCCTAATCAATATAAATATAGGAGTCCTATTTATTTTAGCTACTTCAA
GCTTAGCCGTATATGCAATCCTATGATCCGGATGAGCTTCCAATTCTAAATATGCTTTAATTGGAGCCCT
ACGAGCCGTAGCACAAACTATTTCATACGAAGTAACATTAGCAGTTATCCTTCTATCAGTGCTTCTAATA
AACGGGTCCTTTACTTTATCCACACTTATCACTACCCAGCAATTTACATGACTCCTACTCCCAACATGAC
CCCTAGCAATAATATGATTTACTTCAACATTAGCAGAAACTAATCGAGCTCCGTTCGATTTAACAGAAGG
AGAATCAGAACTCGTATCAGGATTTAATGTTGAATACGCAGCCGGTCCATTTGCCTTATTCTTCATAGCT
GAGTACACCAACATTATCATAATAAACGCATTAACAGTAACCCTCTTTATAGGAGCACTGCTAAACCCTA
TTTCTCCCGAGACCTTTACATTAAATTTCGTCCTAAAAACACTCATTTTAACTTCCACTTTTTTATGGAT
CCGAGCATCCTACCCTCGATTCCGTTATGACCAACTCATGCACCTCCTATGAAAAAACTTTTTACCCCTA
ACCCTAGCTTTATGCATATGACACATCTCCCTCCCAATTATAACAGCATGTGTACCTCCCCAAATCTAAG
AAATATGTCTGATAAAAGAGTTACTTTGATAGAGTAAATTATAGAGGTTTAAATCCTCTTATTTCTAGGA
CCATAGGAATCGAACCTAATCCTAAGAATCCAAAATTCTCCGTGCTACCTCTTACACCACGTCCTAAACA
GTAAGGTCAGCTAAATAAGCTATCGGGCCCATACCCCGAAAATGTTGGTTTATATCCTTCCCGTACTAAT
TAACCCCCTAACTTCCTCCACAATCTACTTCACTCTCTTCTCTGGAACCATAGTTACACTTTTCAGTTCA
CATTGACTTCTAACTTGAGTTGGACTAGAAATAAGTATATTAGCTATTATCCCTATTCTAATTGATAAAG
GAAACCCTCGATCCACAGAGGCCGCATGCAAATATTTCCTCATTCAAGCCACCGCATCAATAATCTTAAT
AATAGGCACAATAATCAATTTTATAGATTCAGGTCAATGGACCTTGTCTAACTCATACAACCAAATCTCA
TCATTAATATTTACAATTGCACTCTCAATAAAAATAGGACTTGCCCCATTCCACCTATGAGTCCCAGAAG
TTACCCAAGGAATTCCACTTAAATCAGGACTAATTGTATTAACATGACAAAAAATTGCTCCAATTTCTAT
CGTATATCAAATCGCGCCCTCTATAAACTCAACCCTCATATTACTTATAGGAACCTTATCAATCATGCTA
GGAGGCTGAGGAGGACTTAACCAAACCCAACTACGAAAGATCATAGCATACTCATCAATCGCCCACATGG
GGTGAATAATAGCAATTGTCACATATAATCCAACCCTAACAATATTCAACTTAATTATCTATCTTATACT
CACCATTAATATATTTATACTCCTCCTTTTCTACAAAAAAACTACTACCCTTTCCCTATCCAACATATGA
AGCAAATTCCCTCTCCTAACACCTACAATCTTAATTGTACTAATATCACTAGGAGGCTTACCTCCTCTAA
CAGGGTTCACACCAAAATGAGCCATCCTTAAAGAGCTTATCTCAAATAACAACATTACATTCTCCACACT
AATAGCAATACTAGCACTGCTAAATTTGTACTTCTATACGCGACTTATTTATTCAACATCTCTAACCTTA
TTCCCATCATTTAATAACACCAAAATAAAATGACAATTTGAAAATACAAAACTCACACCTTTTCTACCTA
CACTTATTATTACCTCTACTCTCTCCCTCCCACTAATACCCCTCTTCTTACTCCTAAGCTAGGAATTTAG
GTTAACCCAGACCAAGGACCTTCAAAGTCCTAAGCAAGTACTTAATACTTAATTCCTGCACTAAGGACTG
CAAGACTCTATCTTACATCAATTGAATGCAAACCAATCACTTTAATTAAGCTAAGCCCTTAATCTCTAGA
CTGATGGGATTTAAACCCATAAGACCTTAGTTAACAGCTAAACGCCCTACTCAACTGGCTTCAATCTACT
TCTCCCGCCGTTAGGGGAAAAAGGCGGGAGAAGCCCCGGCAGAGTTGAAGCTGCTCCTTTGAATTTGCAA
TTCAATATGAATGTTCACCTCGGGACTTGGCAAAAAGAGGGCTCAACCTCTGTCTTTAGATTTACAGTCT
AATGCTTACTCAGCCATTTTACCACCTACCTATGTTCATCAACCGTTGATTCTTCTCAACTAATCATAAA
GATATCGGTACACTTTACCTTCTATTTGGCGCTTGAGCCGGAATAGTAGGAACTGCACTCAGCCTACTAA
TCCGTGCTGAACTAGGTCAACCTGGAGCTCTATTAGGTGATGACCAAATTTATAATGTTATTGTTACTGC
TCATGCATTTGTTATAATTTTCTTTATAGTAATACCAATTATAATCGGTGGATTTGGGAACTGACTAGTG
CCCCTAATAATTGGGGCTCCTGATATAGCATTCCCACGTTTAAATAATATAAGCTTCTGGCTTCTTCCCC
CTTCTTTTCTCCTCCTGCTCGCTTCTTCTATAGTTGAAGCAGGCGCAGGAACCGGCTGAACCGTATACCC
TCCATTAGCTGGAAATCTTGCCCATGCAGGAGCTTCAGTAGACCTAACCATTTTCTCCCTTCACTTAGCA
GGAGTTTCATCTATTCTAGGTGCAATTAACTTTATTACAACAATTATTAACATAAAACCACCTGCCATGT
CTCAATATCAAACCCCTCTATTTGTCTGATCCGTACTAATTACAGCAGTACTGTTACTCCTGTCTCTCCC
AGTTCTTGCAGCAGGAATTACAATACTGCTTACGGACCGTAACCTTAACACTACATTTTTTGACCCTGCT
GGAGGTGGGGATCCTATTCTCTATCAACACCTGTTCTGATTTTTTGGACATCCTGAAGTTTATATTCTTA
TTCTTCCAGGATTTGGTATAATTTCTCATATCGTAACGTACTACTCAGGAAAAAAGGAACCATTCGGTTA
TATAGGGATAGTGTGGGCTATAATATCTATTGGTTTCCTTGGATTTATCGTATGAGCCCACCATATATTC
ACTGTTGGAATAGATGTAGATACTCGAGCTTACTTTACATCCGCAACCATAATCATTGCTATCCCCACAG
GGGTAAAAGTTTTTAGCTGACTAGCAACCCTGCACGGAGGAAATATTAAATGATCACCAGCTATACTGTG
AGCACTCGGCTTTATTTTCCTATTCACTGTAGGAGGCCTAACAGGGATCGTCTTAGCCAACTCTTCATTA
GATATTGTTCTACACGATACATACTACGTAGTGGCCCACTTTCACTACGTATTATCAATGGGAGCTGTAT
TTGCTATTATAGGAGGTTTCATTCACTGATTCCCCCTTTTTTCTGGTTATACACTAAGTGATATGTGAGC
TAAAATCCATTTTACTGTGATATTTGTTGGAGTAAATTTAACTTTCTTCCCTCAACATTTCTTAGGACTA
TCAGGTATACCACGTCGATACTCTGACTACCCAGATGCCTACACAGCATGAAATACTGTCTCCTCAATAG
GTTCATTTATTTCTCTCACAGCTGTTATAATTATAATCTTTATAATTTGAGAAGCATTTGCATCAAAACG
AGAAGTCCTTGCTGTAGAGCTAACACCAACTAACCTAGAATGACTACATGGGTGCCCTCCACCCTATCAT
ACATTTGAAGAACCCACTTACATTAAAGCTTAAAGCAAGAAAGGAAAGAATCGAACTTTCTAAGACTAGT
TTCAAGCCAGCCTCATAACCATTATGACTTTCTTTATGAGATATTAGTAAAGTAATTACATAACTTTGTC
AAAGTTAACTCATAGGTTGAACTCCTATATATCTCCATGGCATACCCGCTCGAACTAGGATTTCAAGACG
CCACATCTCCTATTATAGAAGAACTTTTACATTTTCACGACCATACTCTCATAATTGTTTTCTTGATTAG
CTCTCTAGTCCTCTATATCATCTCATTAATGCTAACTACAAAATTAACCCATACAAGCACTATAGATGCT
CAAGAAGTAGAAACTATTTGAACCATTCTTCCCGCTATTATCCTTATTCTGATTGCCCTTCCCTCTCTGC
GTATTTTATATATAATAGACGAAATTAATAACCCGTCCTTAACAGTAAAAACAATAGGCCATCAATGATA
TTGAAGCTACGAGTATACAGACTACGAAGACCTTAACTTTGATTCCTACATAGTTCCAACTTCAGAGTTA
ACCCCCGGAGACCTGCGACTCCTGGAAGTCGATAATCGAGTTGTTCTTCCAATAGAACTACCTGTACGAA
TACTAATTTCATCTGAAGATGTACTTCACTCTTGAACAGTTCCATCCCTTGGACTAAAAACAGACGCCAT
CCCAGGCCGACTAAATCAAGCTACACTTACATCAACACGACCAGGGCTCTATTATGGGCAATGCTCCGAA
ATTTGTGGATCAAACCATAGCTTTATGCCAATTGTTCTTGAAATAGTTCCATTAAAACACTTTGAAAACT
GATCCTCATCAATACTTTAAATTCATTATGAAGCTAAAATAGCATCAACCTTTTAAGTTGAAGATTAGGA
GTTAAACCTCCTCATAATGAAATGCCCCAACTAGACACATCTACATGATTTACCACAATTCTATCAATAA
TTCTAGCTCTTTTCTTTATATTTCAACTTAAAATCTCAAATCACTTTTACCCGTCTAATCCTTCCCCTAA
AGACACTAAACTAACTGAACATAAAACTCCTTGAGAAGAAAAATGAACGAAAATCTATTTGCCTCTTTCA
TTACCCCTTCATTAATAGGTCTTCCTATTGTTCTCTTTATCATTATATTTCCCAGTTTACTTTTTCCCTC
ACCTACTCGACGACTAACAAATAATCGTCTAGTGTCATTCCAACAATGACTAATCCAACTTGTATTAAAA
CAACTAATGGCAATGCACAACCCAAAAGGACGTACCTGGTCCCTGATACTAATCACGTTAATTATGTTTA
TTGGCTCAACTAATCTTCTAGGCCTATTACCTCATTCCTTCACACCAACAACCCAACTATCAATAAATTT
AGGAATAGCTATCCCTCTATGAGCAGGAGCTGTAATTACTGGATTTCGTCATAAGACCAAAGCATCATTA
GCCCATTTCCTCCCACAAGGAACCCCAATTCCTCTTATCCCTATACTTATTATTATTGAGACAATCAGCC
TTTTTATCCAACCCATAGCATTAGCTGTACGATTGACAGCTAATATTACAGCCGGCCATCTTCTTATGCA
TTTAATTGGAGGAGCAACCCTTGTACTAATATCTATCAGCCCTCCTACAGCTATAATCACTTTTATTATT
CTTGTACTATTAACGATGCTTGAATTTGCAGTCGCACTAATCCAAGCTTATGTCTTTACTCTCTTAGTAA
GCCTATATTTACACGATAATACATAATGACCCACCAGACTCACGCCTACCATATAGTTAACCCTAGCCCT
TGGCCACTAACAGGGGCCCTCTCTGCCTTACTCATAACATCCGGCCTAGTAATATGATTTCACTTCAATT
CTTCCCTTCTCCTTACACTAGGCCTTATAACTAATACTTTAACAATATATCAGTGGTGACGAGATGTCGT
GCGAGAAGGTACGTTTCAAGGTCACCACACATCAATTGTCCAAAAAGGTCTACGATATGGCATAATTCTA
TTTATCATTTCAGAAGTTTTCTTCTTTGCCGGATTTTTCTGGGCATTCTACCACTCTAGCCTAGCCCCAA
CCCCCGAATTAGGCAGTTGCTGACCTCCAGTAGGAATTAATCCCCTTAACCCCTTAGAAGTCCCATTACT
AAATACCTCCGTCCTTTTAGCTTCAGGAGTTTCAATTACCTGAGCTCACCACAGCCTAATAGAAGGGGAC
CGAAAACATATAGTTCAAGCACTATCAATTACAATTGCTTTAGGACTTTATTTTACCCTTCTCCAAGCCT
CTGAATATTTAGAGACTTCTTTCACAATCTCGGACGGAGTGTATGGATCAACATTCTTTATAGCTACAGG
CTTCCATGGTCTCCACGTTATTATTGGATCCACCTTTCTCCTAGTATGCCTAATTCGTCAACTAAATTTC
CACTTCACATCTAAACACCACTTTGGATTTGAAGCAGCTGCATGATATTGACACTTTGTAGACGTAGTAT
GACTCTTCCTTTACGTATCTATTTATTGATGAGGCTCATATTCTCTTAGTATTAATTAGTACAATTGACT
TCCAATCAATTAGTTCTGGAACCTATCCAGAAGAGAATAATAAACCTTATAATATCCCTCTTCATTAATT
CTTTTATTGCTCTTCTACTAATTTCTGTAGCATTCTGATTACCTCAACTAAACGTATATGCTGAAAAGGC
AAGCCCTTACGAATGCGGCTTTGACCCTATAGGATCTGCTCGCCTGCCATTCTCAATAAAATTTTTCCTA
GTTGCGATTACATTCCTTTTATTTGATCTGGAGATTGCTCTTCTTCTTCCTCTCCCCTGAGCCTCTCAAA
CAAACAACCTTAATCTTATATTAACGATAGCTTTACTATTAGTCTTAATTCTTACCCTTGGGTTAGCCTA
CGAATGAGTCCAAAAAGGTTTAGAATGAATTGAATATGATAATTAGTTTAAAGTAAAACGGGTGATTTCG
ACTCACTAAATTATGGGTCACCATAATTATCAAAATGCCTATCATTATTCTCAATACCATCCTAGCTTAC
TCTACATCTCTACTAGGAATATTTATCTACCGATCCCATCTGATATCATCCCTTCTATGCTTAGAAGGAA
TAATACTATCAATATTTGTCTTATGCTCACTCCTAATTATAAACTTCCACTTCTCCCTATCATTCATAAT
TCCCATCACTTTACTAGTATTTGCTGCATGTGAAGCAGCTGTAGGTCTAGCCCTTCTCGTAATAGTATCA
AATACGTACGGCCTAGACTACGTCCAAAACCTAAATATTCTTCAATGCTAAAAATTATTATACCCACAAT
CCTACTTGCCCCCCTTACATGATTCTCAAAACCTTCTATAATCTGAATTAACCCTTCAATTCATAGTTTA
ATAATTAGCCTAATTGTACTTCTCACATTAAATCGTCCTACAAACACAGACTTAATTTTTTCATTAGTTT
TCTTTACTGATCCTTTGTCCTCTCCTCTATTAATTCTTACAGCATGACTCCTACCCCTTATAATTATAGC
AAGTCAGAGTCATCTAACCCACGAACCACTAATCCGAAAGAAACTATATATTCTTATGTTAATCTCACTA
CAATCCTTTTTAATTATGACTTTCTCTGCTACTGAACTAATCATATTTTATATTCTATTTGAGGCTACCT
TAATCCCTACACTAATTATTATTACTCGATGAGGAAACCAAACCGAACGTCTAAATGCAGGCTTATATTT
TCTATTCTATACCCTAGTAGGTTCATTACCTCTACTAGTAGCATTAATCTATATTCAAAAATCTACAGGA
TCCTTAAACTTTATCATTTCATTATATCAATCATCTAACCTCCCTATATCCTGAACAAACAACATCCTAT
GACTAGCATGCATTATAGCTTTTATAGTTAAAATACCTCTATATGGTCTTCACCTTTGACTACCAAAAGC
TCACGTTGAAGCCCCCATTGCTGGTTCCATGGTTTTAGCTGCTATCCTACTGAAACTTGGCGGATACGGA
ATAATTCGAATTTCAACTTTATTACACCCAATCACGTGTAATATAGCGTACCCCTTTATTATACTATCAC
TGTGAGGCATAATTATAACAAGCTCAATTTGCTTACGACAAACAGACCTAAAATCCCTCATCGCTTACTC
TTCAGTAAGCCATATAGCACTAGTAATCGTGGCAATCATAATTCAAACCCCCTGAAGTTTTATAGGAGCT
ACGGCACTAATAATTGCCCACGGACTTACATCCTCCATATTATTCTGTCTAGCAAACACTAATTATGAAC
GAATTCATAGCCGAACTATAATACTAGCCCGGGGCTTACAATCTATTCTTCCCCTTATAGCAACATGGTG
AATTTTAGCTACCTTAACCAACTTAGCTCTCCCACCTTCCATTAATCTAATCGGTGAATTATTTATTATT
ATATCATCATTCACCTGATCAAGTATTACAATTATCTTAACCGGACTAAATATACTAATCACAGCCCTCT
ACTCACTATATATACTAACTGTAACACAATGAGGAAAATTTACATATCACACATTAAGTGTTAATCCTTC
CTTCACGCGAGAGAATATACTCATATTCCTTCATCTTTTTCCACTTATTATCCTATCAACAAACCCTACC
ATCATTCTAGGCCATTTGTACTGTAAATATAGTTTAAACAAAACTTTAGATTGTGAATCTAACAATAGAG
AATGACAACCTCTTATTTACCAAGAAAGCATGCAAGAACTGCTAATTCATGCTCCCCGTGTTTACATCCA
CGGCTTTCTTAACTTTCATAGGATAGTAGTAATCCATTGGTCTTAGGAACCAAAAAATTGGTGCAACTCC
AAATGAAAGTAATAAATATATTTTCTTCACTTATCCTCACATCACTTGTAATCCTCTTATTCCCTATTTT
CCTTACCATAACTAATTACCACAAACACATTAATTACCCAAACTACGTAAAAATCTCCATTATTTGCGCA
TTATCACTCTGTATAGTACCAACACTAATGTTTATCAACTCAAACTATGAACTCATTATCTCAAACTGAC
ACTGAGTAACTATCCAAACATTCACCCTCTCCATAAGCTTCAAACTAGACTATTTTTCTATATTATTTAT
ACCTGTAGCACTATTCGTAACATGATCAATTATAGAATTCTCAATATGGTACATACACTCTGACCCTTTC
ATTAACCGTTTCTTCAAATACCTCCTCTTATTCCTCATCACTATGATAATCCTAGTAACATCCAACAACC
TATTTCAACTATTCATTGGCTGAGAAGGAGTTGGCATCATATCTTTTTTACTAATCGGGTGATGATATGG
CCGAACAGATGCTAATACAGCAGCCCTCCAAGCTGTCCTATATAACCGAATCGGAGATATCGGATTTGTA
TTAGCTATAGCATGATTTTTACTCAACTCAAACTCATGAGAATTTCAACAACTCTTCATAACAGACGTAC
CTTTACTACCCTTAGTAGGATTGCTCTTAGCCGCCACAGGGAAATCCGCCCAATTCGGCCTTCATCCTTG
ATTACCCTCTGCTATAGAGGGCCCAACCCCTGTATCAGCTTTACTTCACTCCAGTACTATAGTAGTAGCA
GGAGTCTTCCTCCTCATCCGCTTCTACCCACTAATAGAACATAACAAAGCTATCCAAACACTCACTCTAT
GTTTAGGGGCTATTACTACTCTATTTACCGCCATCTGTGCCCTTACCCAAAATGATATCAAAAAGATCAT
CGCATTCTCCACTTCAAGCCAACTAGGATTAATAATAGTAACTATCGGAATTAATCAGCCTCACTTAGCT
TTTCTCCACATTTGTACACACGCATTTTTTAAAGCCATACTATTCATATGCTCAGGATCAATTATTCATA
ACCTAAATGATGAGCAAGACATTCGAAAAATAGGAGGACTCTTCAAAGCCCTTCCACTTACCTCATCCTC
ACTTACTATCGGCAGTTTAGCACTAACGGGAACCCCTTTTCTAACTGGATTTTACTCTAAAGACCTGATT
ATTGAATCTGCAAACACGTCGTATACCAACGCCTGAGCCCTAACTATTACTCTCCTAGCCACCTCTTTAA
CTGCTGTCTACAGCACACGAATTATTTTCTACGTCTTAATAGGACAACCTCGATATTCTCCACTAACCCC
AATTAATGAAAATAACCCCCAACTGCTTAATTCAATTAAACGCCTTCTTATTGGAAGTATTGTTGCAGGG
TTTATCCTCTCATACAACATCCCACCTATGAATATTCCAGTCCTAACCATACCTACTTACCTAAAACTTA
CTGCACTATTAGTAACCATTCTAGGGTTTGTTATTGCTATAGAACTAAACTCAATAACCCTTTATCTAAA
GACCAAAATATACTCAAACACATCAAAATTTTCAGTCATACTAGGCTATTTTCCCACTATCATTCACCGA
TTTAATCCTCATCTTAATCTTATGATAAGCCAAAAACTCTCATCAACTCTATTAGACCTAATGTGGTTAG
AAAAATCTATCCCCAAACTTACCACTAACTTTCACTCAACAGCCTCTACCATAACCTCTAATCAGAAAGG
TCTCATCAAATTATACTTTTTATCATTCTTAACTTCAATACTCCTAGCAGTCACAGTCGTATTCTATTAC
CACGCGTAATTTCAATCACAATAAAAATACTAACAAACAACGACCAGCCAGCTACAACCATTAATCAACT
TCCACAATTATACATAGCTGCCACCCCTATTGAATCTTCACGAATTAACCCCAACTCATCCCCCTCAAAC
ACCATTCAGTTTCCCGAATCCTTAAATTCAATTACAACTTCTACTTCATCATATAAAACTATAAAAACAA
CAATTAAAAATTCCACTAAAAACCCTAATAATAAAACCCCCCAAATAACCACACTTGACCCTCATGTTTC
CGGGTACTCCTCTGTCGCCATAGCCGTAGTATAACCAAACACCACCAACATTCCTCCCAAGTAAATTAAG
AATACTATTAAACCTAGAAAAGACCCTCCAAAATATAACACAACCCCACATCCAATTCCCCCACTAATAA
TTAACCCTAAACCCCCATAAATAGGAGAAGGCTTTGAAGAAAATCCTACAAAACCTAAAACAAAAAGTAT
ACTTAATAAGTACGCTATATATGCCATTATTTTTACATGGAATTTAACCATGACTAATGACATGAAAAAT
CATCGTTGTTATTCAACTATAAAAACACTAATGACAAACACTCGCAAAACCCATCCTTTAATTAAAATCA
TTAACCACTCTTTTATTGATTTACCTGCACCTTCCAATATTTCCGCATGATGAAACTTTGGATCCCTACT
AGGCCTCTGCCTAGCCATCCAAATCCTCACAGGATTATTTCTAGCAATACATTACACATCTGACACCACA
ACAGCCTTCTCATCAGTTACCCATATCTGCCGAGACGTGAATTACGGCTGACTTATCCGCTACATACATG
CCAACGGTGCATCTATGTTTTTTATCTGCCTCTTTCTTCATGTAGGCCGAGGATTATACTACGGCTCATA
CACTTACTTTGAAACATGAAACATTGGAGTTGTCCTTTTATTCGTAGTAATAGCCACAGCTTTCATAGGC
TATGTCCTCCCTTGAGGTCAAATATCATTCTGAGGAGCAACCGTAATTACTAATCTTTTATCTGCCATCC
CATACATCGGTACAACCTTAGTAGAATGAATTTGAGGTGGTTTCTCAGTAGACAAAGCCACTCTAACACG
ATTTTTCGCATTCCACTTTGTTCTTCCATTTATCGTTGCAGCCCTAGTCATAGTCCACCTTCTTTTCCTC
CATGAAACCGGATCAAACAACCCCTCAGGCCTTATTTCTGACTCAGACAAAATTCCTTTTCACCCATATT
ACACCATCAAAGATATCCTTGGAGTCCTTCTTCTTATTATAGCCCTAATAATTCTAGTCCTATTTTCACC
TGACCTTCTAGGAGACCCCGACAACTATATACCCGCAAATCCTTTAAACACTCCACCCCACATCAAACCA
GAGTGATACTTCTTGTTTGCCTACGCTATCCTACGATCTATCCCCAACAAACTGGGAGGTGTCTTAGCCC
TAGTCTTTTCAATCCTCATTCTAATGCTTTTCCCACTACTTCATGTATCCAAGCAACGCAGTATAATATT
CCGACCACTAAGCCAATGCGTGTTCTGATTCCTAGTAGCAGACCTACTTACATTAACCTGAATCGGAGGA
CAACCTGTTGAACACCCATTCATCATTATTGGTCAATTAGCATCAATACTTTATTTCACTATTATTCTCT
TAATACTACCAACCGTCAGCCTAATCGAAAATAAACTTCTTAAATGAAGAGCCCTAATAGTATAAAACAT
TACTTTGGTCTTGTAAACCAAAAATGAAGCTATGGACTTCTTAGAGCAACCTATCAGGGAAGAAAATTTG
CTTTCCACCTTCAACTCCCAAAGCTGATATTCCTTACTTAAACTATTCCCTGCACTCGTCCAATCACTTA
AATATTGACTCTTATGTCCCTATCGGCTTTCATCCAACAACGCACCTATGTATATCGTGCATTAATTGCA
CCTCCACATTAAGCCATTATTAATCCATGTACATAGGACATTATATGTTTAATCAACATTAATAATACTC
TCCCCATGCATATAAGCACGTCCATAATACTAACATAGTACATAATACATTACCCCAGCCCGCCCACATA
AATGCTCGTCAATACGGCAGTGATCTTCCAACGAACATGGTTTTTAGTACATAGCACATTCATATCACTG
GCGGTACATACCACATTCAGTCATAAATCCTTCTCGATCCAAATGACTATCCCCTACCAATGTTGGTCTC
ATAATCTACCAACCTCCGTGAAACCATCTACTCGCCCACTCCGTGTCCCTCTTCTTGCTCTGATCCCATT
TAACTTGGGGGTAGCTAACAATGATCTTTATCTGGCATCTGGTTCCTACCTCAGGGCCATAGACTGCATA
ATCGCCCACTCGTTCCCCTTAAATAAGACATCACGATGGATTAGTTCCATTCTAGCCCGTGACCCAACAT
AACTGCACTGTCATGCCTTTAGTGGTTTTATTTTTTGGGGGATGCAGGGACTCACCATTGGCCGTCAGAG
GCCTCGTTCCATTCAATTCAATTGTAGCTGGACTTATTGGTCAATATTCTCGCTTTACATATTACTATCT
GCCATAGTCGGGCTTAATGCTCGATAGACAAAAAAAAAGTTAAAACAGAAATTCCACAGTAGATTCAAAC
GCAAAAACAAACGTTCAATCAATTATTTTTTTTAGAACCCATATATTTATTTATCTGCTTAAAATTTTAT
TAACTTCTTCCCCAGTAGTTTAACATTCATAAAATAGCTCTAATTAATCCAAACTATATACAGATAACCA
TTATACTATCACTACACCAATAATACTTACATATAACTCTGTTTACCAAATCCTATATAAGCATGACCCA
TAAAATCCCTAACATT


Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.