Scientific name | Chrysemys picta |
Common name | Painted turtle |
Maximum lifespan | 61.00 years (Chrysemys picta@AnAge) |
Total mtDNA (size: 16866 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 6541 | 10325 | 4376 | 2165 | 4515 | 5810 |
Base content per 1 kb (bases) | 388 | 612 | 259 | 128 | 268 | 344 |
Base content (%) | 38.8% | 61.2% |
Total protein-coding genes (size: 11365 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 4509 | 6856 | 3185 | 1324 | 3048 | 3808 |
Base content per 1 kb (bases) | 397 | 603 | 280 | 116 | 268 | 335 |
Base content (%) | 39.7% | 60.3% |
Total tRNA-coding genes (size: 1548 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 583 | 965 | 340 | 243 | 426 | 539 |
Base content per 1 kb (bases) | 377 | 623 | 220 | 157 | 275 | 348 |
Base content (%) | 37.7% | 62.3% |
Total rRNA-coding genes (size: 2583 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 1020 | 1563 | 590 | 430 | 552 | 1011 |
Base content per 1 kb (bases) | 395 | 605 | 228 | 166 | 214 | 391 |
Base content (%) | 39.5% | 60.5% |
12S rRNA gene (size: 969 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 397 | 572 | 232 | 165 | 206 | 366 |
Base content per 1 kb (bases) | 410 | 590 | 239 | 170 | 213 | 378 |
Base content (%) | 41.0% | 59.0% |
16S rRNA gene (size: 1614 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 623 | 991 | 358 | 265 | 346 | 645 |
Base content per 1 kb (bases) | 386 | 614 | 222 | 164 | 214 | 400 |
Base content (%) | 38.6% | 61.4% |
ATP6 (size: 684 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 279 | 405 | 206 | 73 | 181 | 224 |
Base content per 1 kb (bases) | 408 | 592 | 301 | 107 | 265 | 327 |
Base content (%) | 40.8% | 59.2% |
ATP8 (size: 189 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 64 | 125 | 53 | 11 | 50 | 75 |
Base content per 1 kb (bases) | 339 | 661 | 280 | 58 | 265 | 397 |
Base content (%) | 33.9% | 66.1% |
COX1 (size: 1548 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 632 | 916 | 379 | 253 | 458 | 458 |
Base content per 1 kb (bases) | 408 | 592 | 245 | 163 | 296 | 296 |
Base content (%) | 40.8% | 59.2% |
COX2 (size: 687 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 266 | 421 | 175 | 91 | 182 | 239 |
Base content per 1 kb (bases) | 387 | 613 | 255 | 132 | 265 | 348 |
Base content (%) | 38.7% | 61.3% |
COX3 (size: 784 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 328 | 456 | 211 | 117 | 221 | 235 |
Base content per 1 kb (bases) | 418 | 582 | 269 | 149 | 282 | 300 |
Base content (%) | 41.8% | 58.2% |
CYTB (size: 1140 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 478 | 662 | 350 | 128 | 309 | 353 |
Base content per 1 kb (bases) | 419 | 581 | 307 | 112 | 271 | 310 |
Base content (%) | 41.9% | 58.1% |
ND1 (size: 971 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 373 | 598 | 271 | 102 | 280 | 318 |
Base content per 1 kb (bases) | 384 | 616 | 279 | 105 | 288 | 327 |
Base content (%) | 38.4% | 61.6% |
ND2 (size: 1039 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 396 | 643 | 314 | 82 | 248 | 395 |
Base content per 1 kb (bases) | 381 | 619 | 302 | 79 | 239 | 380 |
Base content (%) | 38.1% | 61.9% |
ND3 (size: 350 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 136 | 214 | 91 | 45 | 105 | 109 |
Base content per 1 kb (bases) | 389 | 611 | 260 | 129 | 300 | 311 |
Base content (%) | 38.9% | 61.1% |
ND4 (size: 1381 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 544 | 837 | 399 | 145 | 356 | 481 |
Base content per 1 kb (bases) | 394 | 606 | 289 | 105 | 258 | 348 |
Base content (%) | 39.4% | 60.6% |
ND4L (size: 297 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 112 | 185 | 81 | 31 | 93 | 92 |
Base content per 1 kb (bases) | 377 | 623 | 273 | 104 | 313 | 310 |
Base content (%) | 37.7% | 62.3% |
ND5 (size: 1809 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 700 | 1109 | 493 | 207 | 502 | 607 |
Base content per 1 kb (bases) | 387 | 613 | 273 | 114 | 278 | 336 |
Base content (%) | 38.7% | 61.3% |
ND6 (size: 525 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 214 | 311 | 171 | 43 | 74 | 237 |
Base content per 1 kb (bases) | 408 | 592 | 326 | 82 | 141 | 451 |
Base content (%) | 40.8% | 59.2% |
ATP6 (size: 684 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
6 | 12 | 12 | 8 | 10 | 13 | 5 | 14 | 11 | 0 | 1 | 0 | 4 | 3 | 2 | 6 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 0 | 0 | 2 | 7 | 4 | 0 | 3 | 2 | 4 | 0 | 1 | 1 | 14 | 0 | 6 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
10 | 15 | 0 | 2 | 3 | 3 | 1 | 0 | 4 | 0 | 3 | 1 | 3 | 4 | 6 | 2 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
1 | 3 | 1 | 1 | 0 | 3 | 0 | 0 | 1 | 4 | 0 | 0 | 0 | 1 | 0 | 3 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
35 | 71 | 80 | 42 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
22 | 69 | 36 | 101 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
16 | 66 | 108 | 38 |
ATP8 (size: 189 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MPQLNTDPWFMILSSSWLMYILILQPKISSYLPTNDPTNKNNKTMHTNSWTWPWTQHSSINS* | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
2 | 3 | 3 | 2 | 0 | 0 | 0 | 4 | 2 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 4 | 1 | 1 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
3 | 3 | 0 | 1 | 3 | 4 | 1 | 0 | 0 | 0 | 2 | 0 | 0 | 3 | 4 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
1 | 0 | 0 | 0 | 2 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 5 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
2 | 13 | 26 | 22 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
5 | 22 | 20 | 16 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
4 | 18 | 29 | 12 |
COX1 (size: 1548 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
22 | 17 | 30 | 8 | 3 | 23 | 2 | 18 | 8 | 1 | 7 | 6 | 23 | 3 | 18 | 23 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 0 | 1 | 11 | 14 | 19 | 0 | 6 | 13 | 23 | 5 | 6 | 4 | 15 | 1 | 9 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
14 | 13 | 1 | 7 | 7 | 14 | 0 | 2 | 2 | 10 | 8 | 2 | 1 | 7 | 7 | 9 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
12 | 9 | 1 | 4 | 11 | 10 | 0 | 2 | 2 | 4 | 0 | 0 | 1 | 0 | 0 | 15 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
155 | 100 | 137 | 124 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
78 | 135 | 97 | 206 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
20 | 144 | 224 | 128 |
COX2 (size: 687 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
13 | 5 | 14 | 1 | 4 | 12 | 2 | 7 | 6 | 0 | 1 | 4 | 10 | 0 | 4 | 6 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
4 | 1 | 1 | 2 | 3 | 6 | 0 | 0 | 1 | 6 | 1 | 1 | 4 | 8 | 1 | 6 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
6 | 7 | 0 | 2 | 4 | 5 | 1 | 0 | 2 | 3 | 6 | 0 | 1 | 3 | 6 | 6 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
5 | 14 | 0 | 2 | 6 | 3 | 0 | 1 | 0 | 4 | 1 | 0 | 0 | 1 | 0 | 6 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
56 | 56 | 69 | 48 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
24 | 56 | 61 | 88 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
11 | 63 | 109 | 46 |
COX3 (size: 784 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
9 | 5 | 11 | 2 | 4 | 18 | 1 | 7 | 7 | 1 | 0 | 2 | 12 | 1 | 9 | 14 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
1 | 2 | 0 | 3 | 9 | 7 | 0 | 4 | 6 | 8 | 1 | 1 | 3 | 8 | 1 | 7 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
9 | 10 | 0 | 3 | 0 | 7 | 1 | 1 | 3 | 5 | 6 | 0 | 1 | 2 | 3 | 4 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
11 | 7 | 1 | 3 | 1 | 2 | 0 | 1 | 0 | 3 | 1 | 0 | 0 | 0 | 0 | 12 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
65 | 66 | 63 | 67 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
42 | 69 | 53 | 97 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
10 | 76 | 119 | 56 |
CYTB (size: 1140 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
15 | 19 | 11 | 10 | 11 | 31 | 0 | 11 | 9 | 0 | 2 | 2 | 10 | 0 | 8 | 19 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 0 | 2 | 3 | 11 | 5 | 0 | 8 | 6 | 10 | 2 | 1 | 5 | 16 | 1 | 6 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
16 | 13 | 1 | 4 | 8 | 12 | 0 | 0 | 1 | 4 | 9 | 2 | 0 | 1 | 21 | 4 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
8 | 5 | 0 | 2 | 6 | 9 | 0 | 1 | 0 | 7 | 0 | 0 | 0 | 1 | 0 | 9 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
72 | 104 | 115 | 89 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
48 | 102 | 79 | 151 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
8 | 144 | 159 | 69 |
ND1 (size: 971 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
8 | 12 | 25 | 8 | 4 | 34 | 1 | 16 | 5 | 1 | 2 | 1 | 7 | 0 | 6 | 14 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
0 | 1 | 0 | 4 | 9 | 8 | 0 | 4 | 2 | 10 | 0 | 1 | 6 | 17 | 1 | 3 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
8 | 7 | 0 | 4 | 11 | 13 | 0 | 0 | 1 | 3 | 9 | 0 | 1 | 6 | 9 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
1 | 11 | 0 | 2 | 2 | 7 | 0 | 1 | 1 | 6 | 1 | 0 | 0 | 0 | 0 | 8 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
62 | 89 | 86 | 86 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
35 | 92 | 57 | 139 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
5 | 90 | 174 | 54 |
ND2 (size: 1039 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
11 | 20 | 24 | 5 | 4 | 43 | 1 | 9 | 12 | 1 | 0 | 0 | 4 | 0 | 5 | 5 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
1 | 0 | 1 | 4 | 12 | 5 | 0 | 2 | 2 | 7 | 1 | 2 | 2 | 15 | 0 | 9 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
21 | 28 | 0 | 5 | 5 | 11 | 0 | 3 | 3 | 2 | 8 | 0 | 0 | 3 | 9 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
6 | 4 | 1 | 1 | 0 | 13 | 0 | 0 | 1 | 3 | 0 | 0 | 0 | 0 | 0 | 11 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
43 | 96 | 145 | 62 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
34 | 119 | 61 | 132 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
5 | 99 | 189 | 53 |
ND3 (size: 1039 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
11 | 20 | 24 | 5 | 4 | 43 | 1 | 9 | 12 | 1 | 0 | 0 | 4 | 0 | 5 | 5 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
1 | 0 | 1 | 4 | 12 | 5 | 0 | 2 | 2 | 7 | 1 | 2 | 2 | 15 | 0 | 9 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
21 | 28 | 0 | 5 | 5 | 11 | 0 | 3 | 3 | 2 | 8 | 0 | 0 | 3 | 9 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
6 | 4 | 1 | 1 | 0 | 13 | 0 | 0 | 1 | 3 | 0 | 0 | 0 | 0 | 0 | 11 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
43 | 96 | 145 | 62 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
34 | 119 | 61 | 132 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
5 | 99 | 189 | 53 |
ND4 (size: 1381 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
22 | 23 | 28 | 10 | 14 | 47 | 1 | 11 | 15 | 0 | 1 | 0 | 6 | 1 | 5 | 13 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
1 | 1 | 3 | 6 | 11 | 14 | 0 | 3 | 4 | 10 | 4 | 1 | 6 | 15 | 2 | 10 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
16 | 31 | 0 | 1 | 8 | 15 | 0 | 3 | 4 | 6 | 10 | 2 | 2 | 5 | 12 | 4 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
6 | 9 | 1 | 1 | 1 | 11 | 1 | 1 | 1 | 7 | 1 | 0 | 0 | 0 | 0 | 13 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
72 | 131 | 167 | 90 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
57 | 136 | 82 | 185 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
16 | 132 | 232 | 80 |
ND4L (size: 297 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
4 | 2 | 6 | 3 | 3 | 5 | 1 | 8 | 4 | 1 | 0 | 0 | 1 | 0 | 2 | 2 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
3 | 1 | 2 | 0 | 2 | 3 | 0 | 0 | 3 | 1 | 0 | 0 | 1 | 1 | 0 | 3 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
4 | 1 | 0 | 0 | 2 | 10 | 1 | 3 | 0 | 2 | 1 | 0 | 0 | 0 | 2 | 2 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
3 | 2 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 1 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
13 | 25 | 28 | 33 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
12 | 28 | 19 | 40 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
6 | 28 | 45 | 20 |
ND5 (size: 1809 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
31 | 26 | 39 | 8 | 12 | 38 | 6 | 26 | 10 | 1 | 2 | 7 | 13 | 0 | 14 | 26 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
1 | 1 | 5 | 14 | 14 | 17 | 2 | 4 | 15 | 11 | 0 | 3 | 8 | 18 | 0 | 11 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
15 | 28 | 1 | 5 | 9 | 17 | 1 | 0 | 9 | 6 | 13 | 1 | 1 | 7 | 17 | 5 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
11 | 11 | 2 | 2 | 6 | 28 | 0 | 0 | 6 | 5 | 0 | 0 | 0 | 0 | 1 | 13 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
120 | 131 | 213 | 139 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
70 | 163 | 120 | 250 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
17 | 199 | 274 | 113 |
ND6 (size: 525 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
3 | 0 | 3 | 3 | 0 | 1 | 2 | 11 | 0 | 0 | 11 | 2 | 8 | 8 | 16 | 0 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
7 | 5 | 1 | 3 | 0 | 1 | 2 | 13 | 0 | 5 | 13 | 1 | 1 | 1 | 1 | 0 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
0 | 1 | 2 | 9 | 0 | 2 | 1 | 2 | 0 | 9 | 1 | 2 | 11 | 1 | 0 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
0 | 1 | 2 | 3 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 2 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
72 | 13 | 20 | 70 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
46 | 25 | 18 | 86 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
53 | 5 | 36 | 81 |
Total protein-coding genes (size: 11403 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
151 | 150 | 211 | 70 | 72 | 274 | 24 | 150 | 91 | 7 | 27 | 24 | 100 | 16 | 94 | 132 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
26 | 13 | 17 | 54 | 94 | 92 | 4 | 47 | 55 | 97 | 28 | 19 | 42 | 139 | 9 | 74 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
125 | 162 | 5 | 44 | 62 | 116 | 7 | 14 | 29 | 50 | 77 | 12 | 22 | 43 | 97 | 40 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
67 | 81 | 11 | 23 | 37 | 91 | 1 | 8 | 13 | 45 | 5 | 0 | 2 | 5 | 1 | 101 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
790 | 925 | 1181 | 903 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
486 | 1048 | 722 | 1543 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
180 | 1093 | 1755 | 771 |
Failed to understand id: ?term=("Chrysemys picta"[Organism]) AND (refseq[filter] AND mitochondrion[filter])