Viewing data for Osteolaemus tetraspis


Scientific name Osteolaemus tetraspis
Common name West African dwarf crocodile
Maximum lifespan 70.00 years (Osteolaemus tetraspis@AnAge)

Total mtDNA (size: 16814 bases) GC AT G C A T
Base content (bases) 6869 9945 4432 2437 4514 5431
Base content per 1 kb (bases) 409 591 264 145 268 323
Base content (%) 40.9% 59.1%
Total protein-coding genes (size: 11374 bases) GC AT G C A T
Base content (bases) 4658 6716 3143 1515 3149 3567
Base content per 1 kb (bases) 410 590 276 133 277 314
Base content (%) 41.0% 59.0%
D-loop (size: 1065 bases) GC AT G C A T
Base content (bases) 351 714 216 135 336 378
Base content per 1 kb (bases) 330 670 203 127 315 355
Base content (%) 33.0% 67.0%
Total tRNA-coding genes (size: 1527 bases) GC AT G C A T
Base content (bases) 651 876 376 275 394 482
Base content per 1 kb (bases) 426 574 246 180 258 316
Base content (%) 42.6% 57.4%
Total rRNA-coding genes (size: 2575 bases) GC AT G C A T
Base content (bases) 1125 1450 633 492 569 881
Base content per 1 kb (bases) 437 563 246 191 221 342
Base content (%) 43.7% 56.3%
12S rRNA gene (size: 981 bases) GC AT G C A T
Base content (bases) 445 536 249 196 214 322
Base content per 1 kb (bases) 454 546 254 200 218 328
Base content (%) 45.4% 54.6%
16S rRNA gene (size: 1594 bases) GC AT G C A T
Base content (bases) 680 914 384 296 355 559
Base content per 1 kb (bases) 427 573 241 186 223 351
Base content (%) 42.7% 57.3%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 271 413 196 75 190 223
Base content per 1 kb (bases) 396 604 287 110 278 326
Base content (%) 39.6% 60.4%
ATP8 (size: 162 bases) GC AT G C A T
Base content (bases) 63 99 49 14 37 62
Base content per 1 kb (bases) 389 611 302 86 228 383
Base content (%) 38.9% 61.1%
COX1 (size: 1555 bases) GC AT G C A T
Base content (bases) 648 907 397 251 455 452
Base content per 1 kb (bases) 417 583 255 161 293 291
Base content (%) 41.7% 58.3%
COX2 (size: 684 bases) GC AT G C A T
Base content (bases) 281 403 187 94 178 225
Base content per 1 kb (bases) 411 589 273 137 260 329
Base content (%) 41.1% 58.9%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 348 436 222 126 208 228
Base content per 1 kb (bases) 444 556 283 161 265 291
Base content (%) 44.4% 55.6%
CYTB (size: 1156 bases) GC AT G C A T
Base content (bases) 491 665 346 145 300 365
Base content per 1 kb (bases) 425 575 299 125 260 316
Base content (%) 42.5% 57.5%
ND1 (size: 963 bases) GC AT G C A T
Base content (bases) 390 573 248 142 288 285
Base content per 1 kb (bases) 405 595 258 147 299 296
Base content (%) 40.5% 59.5%
ND2 (size: 1056 bases) GC AT G C A T
Base content (bases) 427 629 295 132 304 325
Base content per 1 kb (bases) 404 596 279 125 288 308
Base content (%) 40.4% 59.6%
ND3 (size: 348 bases) GC AT G C A T
Base content (bases) 142 206 90 52 104 102
Base content per 1 kb (bases) 408 592 259 149 299 293
Base content (%) 40.8% 59.2%
ND4 (size: 1374 bases) GC AT G C A T
Base content (bases) 536 838 367 169 385 453
Base content per 1 kb (bases) 390 610 267 123 280 330
Base content (%) 39.0% 61.0%
ND4L (size: 294 bases) GC AT G C A T
Base content (bases) 122 172 90 32 99 73
Base content per 1 kb (bases) 415 585 306 109 337 248
Base content (%) 41.5% 58.5%
ND5 (size: 1821 bases) GC AT G C A T
Base content (bases) 726 1095 495 231 506 589
Base content per 1 kb (bases) 399 601 272 127 278 323
Base content (%) 39.9% 60.1%
ND6 (size: 528 bases) GC AT G C A T
Base content (bases) 227 301 170 57 100 201
Base content per 1 kb (bases) 430 570 322 108 189 381
Base content (%) 43.0% 57.0%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 7 (3.08%)
Alanine (Ala, A)
n = 17 (7.49%)
Serine (Ser, S)
n = 12 (5.29%)
Threonine (Thr, T)
n = 27 (11.89%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 9 (3.96%)
Leucine (Leu, L)
n = 62 (27.31%)
Isoleucine (Ile, I)
n = 15 (6.61%)
Methionine (Met, M)
n = 11 (4.85%)
Proline (Pro, P)
n = 16 (7.05%)
Phenylalanine (Phe, F)
n = 5 (2.2%)
Tyrosine (Tyr, Y)
n = 5 (2.2%)
Tryptophan (Trp, W)
n = 4 (1.76%)
Aspartic acid (Asp, D)
n = 2 (0.88%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 11 (4.85%)
Glutamine (Gln, Q)
n = 7 (3.08%)
Histidine (His, H)
n = 4 (1.76%)
Lysine (Lys, K)
n = 5 (2.2%)
Arginine (Arg, R)
n = 4 (1.76%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 7 10 10 7 18 7 18 5 2 1 2 4 2 3 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 1 8 7 1 0 2 4 1 1 0 15 0 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 12 0 0 4 6 0 1 1 3 2 1 2 2 9 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 4 0 2 0 3 2 1 0 3 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
39 73 71 45
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
17 70 39 102
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
19 53 113 43
ATP8 (size: 162 bases)
Amino acid sequence: MPQLNPEPWLTILSVTWLVLIVILQPKIASLKFMNSPTHPDQKTTKPWPWPQT*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 1 (1.89%)
Serine (Ser, S)
n = 3 (5.66%)
Threonine (Thr, T)
n = 6 (11.32%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 3 (5.66%)
Leucine (Leu, L)
n = 7 (13.21%)
Isoleucine (Ile, I)
n = 4 (7.55%)
Methionine (Met, M)
n = 2 (3.77%)
Proline (Pro, P)
n = 9 (16.98%)
Phenylalanine (Phe, F)
n = 1 (1.89%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 4 (7.55%)
Aspartic acid (Asp, D)
n = 1 (1.89%)
Glutamic acid (Glu, E)
n = 1 (1.89%)
Asparagine (Asn, N)
n = 2 (3.77%)
Glutamine (Gln, Q)
n = 4 (7.55%)
Histidine (His, H)
n = 1 (1.89%)
Lysine (Lys, K)
n = 4 (7.55%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 1 1 1 0 2 0 4 4 0 0 2 1 0 0 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 0 1 0 0 0 0 0 0 0 2 7 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 2 0 1 1 0 0 0 1 0 0 1 0 1 1 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 0 1 0 1 4 0 0 0 0 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
6 17 19 12
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
5 18 14 17
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
3 14 29 8
COX1 (size: 1555 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 43 (8.32%)
Alanine (Ala, A)
n = 34 (6.58%)
Serine (Ser, S)
n = 36 (6.96%)
Threonine (Thr, T)
n = 38 (7.35%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 36 (6.96%)
Leucine (Leu, L)
n = 58 (11.22%)
Isoleucine (Ile, I)
n = 44 (8.51%)
Methionine (Met, M)
n = 30 (5.8%)
Proline (Pro, P)
n = 31 (6.0%)
Phenylalanine (Phe, F)
n = 46 (8.9%)
Tyrosine (Tyr, Y)
n = 17 (3.29%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 14 (2.71%)
Glutamic acid (Glu, E)
n = 9 (1.74%)
Asparagine (Asn, N)
n = 18 (3.48%)
Glutamine (Gln, Q)
n = 12 (2.32%)
Histidine (His, H)
n = 17 (3.29%)
Lysine (Lys, K)
n = 9 (1.74%)
Arginine (Arg, R)
n = 8 (1.55%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
24 20 23 11 8 22 4 13 11 1 5 5 21 5 22 24
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 0 1 7 15 11 1 4 10 21 8 6 3 18 4 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 17 1 2 8 17 2 1 6 5 12 3 0 7 11 7
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 7 2 7 7 9 0 1 0 6 1 0 0 0 0 14
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
136 113 146 123
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
76 132 96 214
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
39 152 210 117
COX2 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 11 (4.85%)
Serine (Ser, S)
n = 14 (6.17%)
Threonine (Thr, T)
n = 21 (9.25%)
Cysteine (Cys, C)
n = 3 (1.32%)
Valine (Val, V)
n = 15 (6.61%)
Leucine (Leu, L)
n = 31 (13.66%)
Isoleucine (Ile, I)
n = 13 (5.73%)
Methionine (Met, M)
n = 14 (6.17%)
Proline (Pro, P)
n = 15 (6.61%)
Phenylalanine (Phe, F)
n = 10 (4.41%)
Tyrosine (Tyr, Y)
n = 9 (3.96%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 10 (4.41%)
Glutamic acid (Glu, E)
n = 11 (4.85%)
Asparagine (Asn, N)
n = 10 (4.41%)
Glutamine (Gln, Q)
n = 8 (3.52%)
Histidine (His, H)
n = 9 (3.96%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 6 10 4 4 9 4 10 8 0 4 4 6 1 6 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 2 1 5 5 0 0 3 3 2 2 3 10 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 12 0 3 3 5 0 1 2 3 6 0 0 5 5 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 8 3 3 7 4 0 1 3 2 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
55 59 65 49
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 58 62 83
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 70 98 46
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (6.92%)
Alanine (Ala, A)
n = 20 (7.69%)
Serine (Ser, S)
n = 19 (7.31%)
Threonine (Thr, T)
n = 22 (8.46%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 13 (5.0%)
Leucine (Leu, L)
n = 32 (12.31%)
Isoleucine (Ile, I)
n = 18 (6.92%)
Methionine (Met, M)
n = 14 (5.38%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 20 (7.69%)
Tyrosine (Tyr, Y)
n = 12 (4.62%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 7 (2.69%)
Asparagine (Asn, N)
n = 5 (1.92%)
Glutamine (Gln, Q)
n = 6 (2.31%)
Histidine (His, H)
n = 16 (6.15%)
Lysine (Lys, K)
n = 3 (1.15%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 9 13 2 3 17 3 6 6 0 5 3 5 0 8 12
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 1 0 15 5 0 1 3 9 5 0 3 7 2 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 8 2 2 2 7 2 0 6 8 4 1 1 1 4 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 4 3 1 4 3 0 0 0 5 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
63 64 68 66
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 67 54 97
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
20 91 106 44
CYTB (size: 1156 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (6.25%)
Alanine (Ala, A)
n = 24 (6.25%)
Serine (Ser, S)
n = 27 (7.03%)
Threonine (Thr, T)
n = 28 (7.29%)
Cysteine (Cys, C)
n = 1 (0.26%)
Valine (Val, V)
n = 12 (3.13%)
Leucine (Leu, L)
n = 64 (16.67%)
Isoleucine (Ile, I)
n = 32 (8.33%)
Methionine (Met, M)
n = 24 (6.25%)
Proline (Pro, P)
n = 24 (6.25%)
Phenylalanine (Phe, F)
n = 26 (6.77%)
Tyrosine (Tyr, Y)
n = 15 (3.91%)
Tryptophan (Trp, W)
n = 12 (3.13%)
Aspartic acid (Asp, D)
n = 11 (2.86%)
Glutamic acid (Glu, E)
n = 6 (1.56%)
Asparagine (Asn, N)
n = 16 (4.17%)
Glutamine (Gln, Q)
n = 10 (2.6%)
Histidine (His, H)
n = 12 (3.13%)
Lysine (Lys, K)
n = 9 (2.34%)
Arginine (Arg, R)
n = 8 (2.08%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 21 21 10 7 30 4 11 9 1 1 3 7 1 5 21
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 1 2 13 9 0 1 4 15 4 1 2 20 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
13 12 0 3 10 11 0 0 3 2 13 0 2 6 10 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 4 2 2 9 8 1 0 2 5 1 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
77 105 112 91
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
48 100 79 158
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
20 141 174 50
ND1 (size: 963 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 16 (5.0%)
Alanine (Ala, A)
n = 32 (10.0%)
Serine (Ser, S)
n = 25 (7.81%)
Threonine (Thr, T)
n = 26 (8.13%)
Cysteine (Cys, C)
n = 1 (0.31%)
Valine (Val, V)
n = 13 (4.06%)
Leucine (Leu, L)
n = 64 (20.0%)
Isoleucine (Ile, I)
n = 24 (7.5%)
Methionine (Met, M)
n = 16 (5.0%)
Proline (Pro, P)
n = 17 (5.31%)
Phenylalanine (Phe, F)
n = 20 (6.25%)
Tyrosine (Tyr, Y)
n = 10 (3.13%)
Tryptophan (Trp, W)
n = 8 (2.5%)
Aspartic acid (Asp, D)
n = 4 (1.25%)
Glutamic acid (Glu, E)
n = 10 (3.13%)
Asparagine (Asn, N)
n = 10 (3.13%)
Glutamine (Gln, Q)
n = 7 (2.19%)
Histidine (His, H)
n = 3 (0.94%)
Lysine (Lys, K)
n = 7 (2.19%)
Arginine (Arg, R)
n = 7 (2.19%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 9 15 6 4 25 7 18 6 1 4 3 5 1 10 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 1 9 8 14 1 3 5 5 3 4 3 7 3 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 14 0 4 4 12 0 0 5 6 4 2 4 4 6 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 7 3 0 4 7 0 0 1 4 2 0 1 0 0 6
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
75 76 89 81
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
38 95 51 137
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
29 77 145 70
ND2 (size: 1056 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 10 (2.85%)
Alanine (Ala, A)
n = 32 (9.12%)
Serine (Ser, S)
n = 32 (9.12%)
Threonine (Thr, T)
n = 45 (12.82%)
Cysteine (Cys, C)
n = 2 (0.57%)
Valine (Val, V)
n = 17 (4.84%)
Leucine (Leu, L)
n = 60 (17.09%)
Isoleucine (Ile, I)
n = 36 (10.26%)
Methionine (Met, M)
n = 13 (3.7%)
Proline (Pro, P)
n = 16 (4.56%)
Phenylalanine (Phe, F)
n = 17 (4.84%)
Tyrosine (Tyr, Y)
n = 7 (1.99%)
Tryptophan (Trp, W)
n = 9 (2.56%)
Aspartic acid (Asp, D)
n = 1 (0.28%)
Glutamic acid (Glu, E)
n = 8 (2.28%)
Asparagine (Asn, N)
n = 12 (3.42%)
Glutamine (Gln, Q)
n = 13 (3.7%)
Histidine (His, H)
n = 3 (0.85%)
Lysine (Lys, K)
n = 13 (3.7%)
Arginine (Arg, R)
n = 5 (1.42%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
21 15 10 8 3 25 7 16 10 3 5 2 3 7 6 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 1 9 13 9 1 0 3 7 0 4 2 8 2 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
18 19 2 7 9 11 1 2 2 6 1 4 1 3 9 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 8 0 0 1 10 3 2 1 2 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
68 80 123 81
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
30 121 58 143
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
34 94 144 80
ND3 (size: 1056 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 10 (2.85%)
Alanine (Ala, A)
n = 32 (9.12%)
Serine (Ser, S)
n = 32 (9.12%)
Threonine (Thr, T)
n = 45 (12.82%)
Cysteine (Cys, C)
n = 2 (0.57%)
Valine (Val, V)
n = 17 (4.84%)
Leucine (Leu, L)
n = 60 (17.09%)
Isoleucine (Ile, I)
n = 36 (10.26%)
Methionine (Met, M)
n = 13 (3.7%)
Proline (Pro, P)
n = 16 (4.56%)
Phenylalanine (Phe, F)
n = 17 (4.84%)
Tyrosine (Tyr, Y)
n = 7 (1.99%)
Tryptophan (Trp, W)
n = 9 (2.56%)
Aspartic acid (Asp, D)
n = 1 (0.28%)
Glutamic acid (Glu, E)
n = 8 (2.28%)
Asparagine (Asn, N)
n = 12 (3.42%)
Glutamine (Gln, Q)
n = 13 (3.7%)
Histidine (His, H)
n = 3 (0.85%)
Lysine (Lys, K)
n = 13 (3.7%)
Arginine (Arg, R)
n = 5 (1.42%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
21 15 10 8 3 25 7 16 10 3 5 2 3 7 6 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 1 9 13 9 1 0 3 7 0 4 2 8 2 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
18 19 2 7 9 11 1 2 2 6 1 4 1 3 9 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 8 0 0 1 10 3 2 1 2 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
68 80 123 81
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
30 121 58 143
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
34 94 144 80
ND4 (size: 1374 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 21 (4.6%)
Alanine (Ala, A)
n = 32 (7.0%)
Serine (Ser, S)
n = 44 (9.63%)
Threonine (Thr, T)
n = 52 (11.38%)
Cysteine (Cys, C)
n = 5 (1.09%)
Valine (Val, V)
n = 19 (4.16%)
Leucine (Leu, L)
n = 86 (18.82%)
Isoleucine (Ile, I)
n = 32 (7.0%)
Methionine (Met, M)
n = 38 (8.32%)
Proline (Pro, P)
n = 23 (5.03%)
Phenylalanine (Phe, F)
n = 15 (3.28%)
Tyrosine (Tyr, Y)
n = 13 (2.84%)
Tryptophan (Trp, W)
n = 11 (2.41%)
Aspartic acid (Asp, D)
n = 5 (1.09%)
Glutamic acid (Glu, E)
n = 7 (1.53%)
Asparagine (Asn, N)
n = 11 (2.41%)
Glutamine (Gln, Q)
n = 16 (3.5%)
Histidine (His, H)
n = 9 (1.97%)
Lysine (Lys, K)
n = 8 (1.75%)
Arginine (Arg, R)
n = 10 (2.19%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
19 13 35 10 5 40 4 25 15 1 3 2 13 1 10 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 4 4 16 10 2 4 3 13 1 1 5 16 1 13
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
18 21 0 3 11 17 1 4 8 10 3 2 2 3 8 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 5 2 1 4 5 3 2 0 5 3 0 0 1 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
84 117 153 104
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
59 139 70 190
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
26 111 230 91
ND4L (size: 294 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.12%)
Alanine (Ala, A)
n = 9 (9.28%)
Serine (Ser, S)
n = 11 (11.34%)
Threonine (Thr, T)
n = 11 (11.34%)
Cysteine (Cys, C)
n = 3 (3.09%)
Valine (Val, V)
n = 0 (0%)
Leucine (Leu, L)
n = 23 (23.71%)
Isoleucine (Ile, I)
n = 6 (6.19%)
Methionine (Met, M)
n = 5 (5.15%)
Proline (Pro, P)
n = 1 (1.03%)
Phenylalanine (Phe, F)
n = 8 (8.25%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 1 (1.03%)
Aspartic acid (Asp, D)
n = 1 (1.03%)
Glutamic acid (Glu, E)
n = 2 (2.06%)
Asparagine (Asn, N)
n = 4 (4.12%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 5 (5.15%)
Lysine (Lys, K)
n = 1 (1.03%)
Arginine (Arg, R)
n = 2 (2.06%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 4 5 4 5 4 0 5 0 0 0 0 0 0 6 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
0 1 2 3 3 3 0 1 2 1 0 1 0 0 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 6 0 1 7 3 0 0 0 0 0 0 5 0 4 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 2 0 0 1 0 1 0 1 1 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
16 21 27 34
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
10 32 14 42
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
6 37 32 23
ND5 (size: 1821 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 29 (4.79%)
Alanine (Ala, A)
n = 54 (8.91%)
Serine (Ser, S)
n = 49 (8.09%)
Threonine (Thr, T)
n = 57 (9.41%)
Cysteine (Cys, C)
n = 4 (0.66%)
Valine (Val, V)
n = 23 (3.8%)
Leucine (Leu, L)
n = 95 (15.68%)
Isoleucine (Ile, I)
n = 60 (9.9%)
Methionine (Met, M)
n = 41 (6.77%)
Proline (Pro, P)
n = 28 (4.62%)
Phenylalanine (Phe, F)
n = 35 (5.78%)
Tyrosine (Tyr, Y)
n = 18 (2.97%)
Tryptophan (Trp, W)
n = 6 (0.99%)
Aspartic acid (Asp, D)
n = 8 (1.32%)
Glutamic acid (Glu, E)
n = 12 (1.98%)
Asparagine (Asn, N)
n = 21 (3.47%)
Glutamine (Gln, Q)
n = 21 (3.47%)
Histidine (His, H)
n = 13 (2.15%)
Lysine (Lys, K)
n = 24 (3.96%)
Arginine (Arg, R)
n = 8 (1.32%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
27 33 34 12 10 38 9 25 19 2 6 5 10 2 18 17
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 1 3 10 18 25 1 4 11 10 4 9 3 13 3 13
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
22 19 3 2 10 21 2 3 11 10 8 2 1 8 13 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 11 1 4 4 19 5 1 1 6 0 0 1 0 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
126 139 218 124
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
62 174 117 254
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
43 182 254 128
ND6 (size: 528 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (14.29%)
Alanine (Ala, A)
n = 9 (5.14%)
Serine (Ser, S)
n = 15 (8.57%)
Threonine (Thr, T)
n = 5 (2.86%)
Cysteine (Cys, C)
n = 7 (4.0%)
Valine (Val, V)
n = 23 (13.14%)
Leucine (Leu, L)
n = 27 (15.43%)
Isoleucine (Ile, I)
n = 6 (3.43%)
Methionine (Met, M)
n = 9 (5.14%)
Proline (Pro, P)
n = 1 (0.57%)
Phenylalanine (Phe, F)
n = 14 (8.0%)
Tyrosine (Tyr, Y)
n = 7 (4.0%)
Tryptophan (Trp, W)
n = 7 (4.0%)
Aspartic acid (Asp, D)
n = 4 (2.29%)
Glutamic acid (Glu, E)
n = 4 (2.29%)
Asparagine (Asn, N)
n = 3 (1.71%)
Glutamine (Gln, Q)
n = 3 (1.71%)
Histidine (His, H)
n = 2 (1.14%)
Lysine (Lys, K)
n = 2 (1.14%)
Arginine (Arg, R)
n = 2 (1.14%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 1 5 4 1 2 3 7 3 0 9 1 6 7 13 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 3 4 1 5 2 1 3 0 7 15 0 0 0 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 1 1 2 1 0 2 8 2 6 1 4 10 2 1 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 3 1 3 1 0 2 1 0 0 1 0 1 0 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
65 18 36 57
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
52 20 25 79
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
53 19 39 65
Total protein-coding genes (size: 11409 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 210 (5.52%)
Alanine (Ala, A)
n = 287 (7.55%)
Serine (Ser, S)
n = 294 (7.73%)
Threonine (Thr, T)
n = 347 (9.13%)
Cysteine (Cys, C)
n = 30 (0.79%)
Valine (Val, V)
n = 185 (4.87%)
Leucine (Leu, L)
n = 635 (16.71%)
Isoleucine (Ile, I)
n = 299 (7.87%)
Methionine (Met, M)
n = 223 (5.87%)
Proline (Pro, P)
n = 199 (5.24%)
Phenylalanine (Phe, F)
n = 225 (5.92%)
Tyrosine (Tyr, Y)
n = 115 (3.03%)
Tryptophan (Trp, W)
n = 99 (2.6%)
Aspartic acid (Asp, D)
n = 69 (1.82%)
Glutamic acid (Glu, E)
n = 88 (2.32%)
Asparagine (Asn, N)
n = 126 (3.31%)
Glutamine (Gln, Q)
n = 109 (2.87%)
Histidine (His, H)
n = 94 (2.47%)
Lysine (Lys, K)
n = 91 (2.39%)
Arginine (Arg, R)
n = 67 (1.76%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
155 144 187 83 61 242 55 165 98 11 43 32 83 27 112 113
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
36 10 20 50 124 105 8 23 46 96 45 29 27 125 18 73
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
120 144 10 31 70 116 10 20 47 60 55 21 29 42 84 24
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
70 68 20 24 45 74 17 9 11 39 8 0 3 7 0 78
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
839 910 1156 897
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
476 1060 699 1567
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
318 1069 1627 788 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​O​s​t​e​o​l​a​e​m​u​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ t​e​t​r​a​s​p​i​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.