Scientific name | Budorcas taxicolor |
Common name | Takin |
Maximum lifespan | 21.90 years (Budorcas taxicolor@AnAge) |
Total mtDNA (size: 16667 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 6528 | 10139 | 4385 | 2143 | 4496 | 5643 |
Base content per 1 kb (bases) | 392 | 608 | 263 | 129 | 270 | 339 |
Base content (%) | 39.2% | 60.8% |
Total protein-coding genes (size: 11338 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 4478 | 6860 | 3188 | 1290 | 3115 | 3745 |
Base content per 1 kb (bases) | 395 | 605 | 281 | 114 | 275 | 330 |
Base content (%) | 39.5% | 60.5% |
D-loop (size: 1235 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 465 | 770 | 296 | 169 | 364 | 406 |
Base content per 1 kb (bases) | 377 | 623 | 240 | 137 | 295 | 329 |
Base content (%) | 37.7% | 62.3% |
Total tRNA-coding genes (size: 1509 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 545 | 964 | 315 | 230 | 432 | 532 |
Base content per 1 kb (bases) | 361 | 639 | 209 | 152 | 286 | 353 |
Base content (%) | 36.1% | 63.9% |
Total rRNA-coding genes (size: 2529 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 1016 | 1513 | 572 | 444 | 578 | 935 |
Base content per 1 kb (bases) | 402 | 598 | 226 | 176 | 229 | 370 |
Base content (%) | 40.2% | 59.8% |
12S rRNA gene (size: 955 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 414 | 541 | 236 | 178 | 199 | 342 |
Base content per 1 kb (bases) | 434 | 566 | 247 | 186 | 208 | 358 |
Base content (%) | 43.4% | 56.6% |
16S rRNA gene (size: 1574 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 602 | 972 | 336 | 266 | 379 | 593 |
Base content per 1 kb (bases) | 382 | 618 | 213 | 169 | 241 | 377 |
Base content (%) | 38.2% | 61.8% |
ATP6 (size: 681 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 268 | 413 | 192 | 76 | 193 | 220 |
Base content per 1 kb (bases) | 394 | 606 | 282 | 112 | 283 | 323 |
Base content (%) | 39.4% | 60.6% |
ATP8 (size: 201 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 65 | 136 | 50 | 15 | 55 | 81 |
Base content per 1 kb (bases) | 323 | 677 | 249 | 75 | 274 | 403 |
Base content (%) | 32.3% | 67.7% |
COX1 (size: 1545 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 632 | 913 | 382 | 250 | 463 | 450 |
Base content per 1 kb (bases) | 409 | 591 | 247 | 162 | 300 | 291 |
Base content (%) | 40.9% | 59.1% |
COX2 (size: 684 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 264 | 420 | 172 | 92 | 180 | 240 |
Base content per 1 kb (bases) | 386 | 614 | 251 | 135 | 263 | 351 |
Base content (%) | 38.6% | 61.4% |
COX3 (size: 784 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 360 | 424 | 250 | 110 | 213 | 211 |
Base content per 1 kb (bases) | 459 | 541 | 319 | 140 | 272 | 269 |
Base content (%) | 45.9% | 54.1% |
CYTB (size: 1140 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 475 | 665 | 332 | 143 | 299 | 366 |
Base content per 1 kb (bases) | 417 | 583 | 291 | 125 | 262 | 321 |
Base content (%) | 41.7% | 58.3% |
ND1 (size: 956 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 375 | 581 | 273 | 102 | 271 | 310 |
Base content per 1 kb (bases) | 392 | 608 | 286 | 107 | 283 | 324 |
Base content (%) | 39.2% | 60.8% |
ND2 (size: 1042 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 367 | 675 | 289 | 78 | 278 | 397 |
Base content per 1 kb (bases) | 352 | 648 | 277 | 75 | 267 | 381 |
Base content (%) | 35.2% | 64.8% |
ND3 (size: 346 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 141 | 205 | 103 | 38 | 97 | 108 |
Base content per 1 kb (bases) | 408 | 592 | 298 | 110 | 280 | 312 |
Base content (%) | 40.8% | 59.2% |
ND4 (size: 1378 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 546 | 832 | 402 | 144 | 385 | 447 |
Base content per 1 kb (bases) | 396 | 604 | 292 | 104 | 279 | 324 |
Base content (%) | 39.6% | 60.4% |
ND4L (size: 297 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 117 | 180 | 77 | 40 | 91 | 89 |
Base content per 1 kb (bases) | 394 | 606 | 259 | 135 | 306 | 300 |
Base content (%) | 39.4% | 60.6% |
ND5 (size: 1821 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 698 | 1123 | 526 | 172 | 499 | 624 |
Base content per 1 kb (bases) | 383 | 617 | 289 | 94 | 274 | 343 |
Base content (%) | 38.3% | 61.7% |
ND6 (size: 528 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 190 | 338 | 154 | 36 | 113 | 225 |
Base content per 1 kb (bases) | 360 | 640 | 292 | 68 | 214 | 426 |
Base content (%) | 36.0% | 64.0% |
ATP6 (size: 681 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
13 | 8 | 6 | 6 | 7 | 13 | 1 | 16 | 9 | 0 | 3 | 1 | 7 | 1 | 5 | 7 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
4 | 0 | 0 | 4 | 6 | 7 | 0 | 0 | 4 | 5 | 2 | 4 | 3 | 5 | 0 | 3 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
10 | 15 | 0 | 2 | 2 | 5 | 0 | 0 | 4 | 1 | 1 | 0 | 2 | 6 | 7 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
5 | 3 | 0 | 0 | 1 | 4 | 0 | 0 | 2 | 2 | 0 | 0 | 0 | 1 | 0 | 3 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
44 | 58 | 80 | 45 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
22 | 66 | 39 | 100 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
10 | 68 | 101 | 48 |
ATP8 (size: 201 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MPQLDTSTWLTMILSMFLVLFIVLQLKISKHDFYYNPKLMTTKTPKQDAPWETKWTKIYLPLSLPL* | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
2 | 2 | 3 | 1 | 3 | 2 | 1 | 5 | 3 | 0 | 1 | 1 | 0 | 0 | 2 | 1 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 1 | 3 | 0 | 0 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
0 | 5 | 3 | 0 | 0 | 4 | 0 | 0 | 0 | 2 | 1 | 0 | 0 | 0 | 1 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
1 | 1 | 0 | 1 | 2 | 7 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 3 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
7 | 17 | 24 | 19 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
3 | 19 | 20 | 25 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
5 | 14 | 37 | 11 |
COX1 (size: 1545 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
23 | 15 | 28 | 8 | 7 | 26 | 5 | 14 | 5 | 1 | 6 | 5 | 21 | 3 | 22 | 20 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
5 | 0 | 1 | 8 | 14 | 18 | 0 | 7 | 8 | 28 | 4 | 12 | 8 | 8 | 0 | 10 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
11 | 16 | 3 | 5 | 10 | 12 | 0 | 2 | 1 | 9 | 10 | 2 | 0 | 9 | 10 | 7 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
10 | 7 | 2 | 5 | 11 | 9 | 0 | 1 | 1 | 4 | 2 | 0 | 0 | 1 | 0 | 15 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
147 | 105 | 142 | 121 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
76 | 135 | 96 | 208 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
27 | 142 | 212 | 134 |
COX2 (size: 684 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
13 | 6 | 14 | 0 | 5 | 16 | 4 | 8 | 5 | 1 | 4 | 1 | 6 | 0 | 4 | 3 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 0 | 2 | 3 | 0 | 6 | 0 | 0 | 4 | 4 | 0 | 2 | 3 | 8 | 0 | 2 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
6 | 10 | 0 | 2 | 5 | 8 | 0 | 1 | 4 | 6 | 4 | 1 | 1 | 1 | 4 | 2 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
5 | 15 | 1 | 2 | 8 | 3 | 2 | 2 | 0 | 4 | 0 | 0 | 0 | 1 | 0 | 4 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
54 | 57 | 68 | 49 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
26 | 55 | 60 | 87 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
12 | 60 | 112 | 44 |
COX3 (size: 784 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
7 | 7 | 6 | 7 | 9 | 11 | 1 | 5 | 7 | 0 | 1 | 8 | 7 | 0 | 6 | 17 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
3 | 0 | 2 | 5 | 8 | 3 | 0 | 1 | 10 | 6 | 1 | 2 | 6 | 4 | 0 | 3 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
8 | 12 | 1 | 3 | 5 | 7 | 0 | 2 | 4 | 5 | 6 | 0 | 0 | 2 | 6 | 3 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
14 | 8 | 0 | 1 | 2 | 2 | 0 | 1 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 12 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
61 | 69 | 63 | 68 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
43 | 67 | 56 | 95 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
6 | 114 | 92 | 49 |
CYTB (size: 1140 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
9 | 33 | 16 | 3 | 18 | 18 | 2 | 13 | 5 | 1 | 2 | 4 | 9 | 0 | 9 | 16 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
4 | 1 | 3 | 3 | 4 | 14 | 0 | 0 | 7 | 16 | 1 | 1 | 6 | 13 | 2 | 5 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
9 | 17 | 0 | 1 | 8 | 11 | 0 | 0 | 3 | 10 | 5 | 1 | 1 | 5 | 13 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
11 | 6 | 0 | 2 | 9 | 7 | 2 | 0 | 0 | 8 | 0 | 1 | 0 | 0 | 0 | 11 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
77 | 89 | 124 | 90 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
52 | 94 | 77 | 157 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
14 | 149 | 165 | 52 |
ND1 (size: 956 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
15 | 19 | 17 | 7 | 10 | 29 | 0 | 10 | 7 | 0 | 2 | 0 | 8 | 0 | 7 | 12 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 0 | 1 | 4 | 11 | 14 | 0 | 0 | 5 | 7 | 0 | 2 | 12 | 8 | 0 | 3 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
3 | 13 | 1 | 3 | 5 | 12 | 1 | 1 | 2 | 5 | 7 | 0 | 0 | 6 | 6 | 2 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
1 | 11 | 0 | 3 | 0 | 7 | 0 | 0 | 1 | 7 | 0 | 0 | 0 | 0 | 0 | 9 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
65 | 86 | 95 | 72 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
33 | 92 | 55 | 138 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
4 | 95 | 159 | 60 |
ND2 (size: 1042 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
21 | 21 | 39 | 5 | 10 | 27 | 1 | 9 | 10 | 0 | 1 | 0 | 5 | 0 | 6 | 7 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
3 | 0 | 0 | 1 | 10 | 6 | 0 | 0 | 5 | 9 | 0 | 3 | 5 | 11 | 0 | 9 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
13 | 18 | 0 | 1 | 9 | 15 | 1 | 0 | 2 | 3 | 5 | 0 | 1 | 4 | 14 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
5 | 5 | 0 | 0 | 0 | 13 | 0 | 0 | 0 | 4 | 0 | 0 | 0 | 0 | 0 | 10 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
42 | 81 | 157 | 67 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
30 | 102 | 59 | 156 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
6 | 106 | 181 | 54 |
ND3 (size: 1042 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
21 | 21 | 39 | 5 | 10 | 27 | 1 | 9 | 10 | 0 | 1 | 0 | 5 | 0 | 6 | 7 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
3 | 0 | 0 | 1 | 10 | 6 | 0 | 0 | 5 | 9 | 0 | 3 | 5 | 11 | 0 | 9 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
13 | 18 | 0 | 1 | 9 | 15 | 1 | 0 | 2 | 3 | 5 | 0 | 1 | 4 | 14 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
5 | 5 | 0 | 0 | 0 | 13 | 0 | 0 | 0 | 4 | 0 | 0 | 0 | 0 | 0 | 10 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
42 | 81 | 157 | 67 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
30 | 102 | 59 | 156 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
6 | 106 | 181 | 54 |
ND4 (size: 1378 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
22 | 21 | 31 | 15 | 16 | 48 | 4 | 9 | 9 | 2 | 4 | 1 | 6 | 0 | 9 | 12 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
6 | 0 | 3 | 4 | 10 | 13 | 1 | 1 | 7 | 9 | 1 | 1 | 9 | 11 | 0 | 4 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
10 | 20 | 2 | 6 | 13 | 10 | 1 | 1 | 10 | 4 | 12 | 1 | 1 | 8 | 15 | 4 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
7 | 8 | 0 | 1 | 3 | 11 | 0 | 2 | 2 | 5 | 1 | 0 | 0 | 0 | 0 | 12 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
69 | 136 | 161 | 93 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
55 | 115 | 84 | 205 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
20 | 151 | 202 | 86 |
ND4L (size: 297 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
3 | 1 | 10 | 1 | 3 | 11 | 2 | 3 | 2 | 0 | 2 | 0 | 4 | 1 | 0 | 4 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
4 | 0 | 3 | 1 | 2 | 4 | 0 | 0 | 2 | 2 | 0 | 0 | 1 | 0 | 0 | 1 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
2 | 1 | 1 | 2 | 5 | 2 | 0 | 1 | 0 | 1 | 3 | 0 | 2 | 2 | 3 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
2 | 2 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
21 | 23 | 29 | 26 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
9 | 22 | 17 | 51 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
10 | 32 | 43 | 14 |
ND5 (size: 1821 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
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Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
37 | 33 | 33 | 14 | 15 | 45 | 3 | 15 | 17 | 1 | 0 | 5 | 6 | 0 | 15 | 28 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 1 | 3 | 3 | 12 | 19 | 0 | 1 | 9 | 17 | 0 | 4 | 9 | 14 | 1 | 8 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
25 | 29 | 2 | 7 | 15 | 12 | 1 | 5 | 6 | 7 | 13 | 1 | 0 | 10 | 27 | 2 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
11 | 9 | 3 | 3 | 6 | 21 | 2 | 1 | 4 | 2 | 1 | 0 | 0 | 1 | 0 | 11 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
93 | 144 | 240 | 130 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
62 | 161 | 133 | 251 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
17 | 221 | 251 | 118 |
ND6 (size: 528 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
17 | 0 | 3 | 0 | 0 | 0 | 0 | 10 | 0 | 1 | 9 | 0 | 5 | 9 | 14 | 0 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
9 | 1 | 0 | 4 | 1 | 0 | 0 | 12 | 1 | 3 | 10 | 3 | 0 | 0 | 0 | 4 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
1 | 2 | 2 | 5 | 0 | 1 | 1 | 3 | 1 | 8 | 3 | 2 | 6 | 4 | 0 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
0 | 0 | 8 | 4 | 0 | 1 | 4 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 2 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
66 | 5 | 51 | 54 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
36 | 24 | 34 | 82 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
52 | 7 | 28 | 89 |
Total protein-coding genes (size: 11403 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
185 | 168 | 211 | 73 | 109 | 258 | 24 | 118 | 82 | 7 | 35 | 26 | 86 | 15 | 102 | 133 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
46 | 4 | 18 | 43 | 82 | 106 | 1 | 22 | 62 | 109 | 19 | 37 | 65 | 88 | 3 | 55 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
102 | 164 | 16 | 38 | 79 | 101 | 5 | 16 | 39 | 62 | 72 | 9 | 15 | 57 | 111 | 22 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
72 | 81 | 14 | 23 | 44 | 88 | 10 | 8 | 13 | 39 | 4 | 1 | 0 | 7 | 0 | 95 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
768 | 904 | 1269 | 858 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
458 | 985 | 752 | 1604 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
188 | 1195 | 1634 | 782 |