Scientific name | Capra caucasica |
Common name | West Caucasian tur |
Maximum lifespan | 19.30 years (Capra caucasica@AnAge) |
Total mtDNA (size: 16624 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 6529 | 10094 | 4349 | 2180 | 4525 | 5569 |
Base content per 1 kb (bases) | 393 | 607 | 262 | 131 | 272 | 335 |
Base content (%) | 39.3% | 60.7% |
Total protein-coding genes (size: 11335 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 4480 | 6855 | 3148 | 1332 | 3156 | 3699 |
Base content per 1 kb (bases) | 395 | 605 | 278 | 118 | 278 | 326 |
Base content (%) | 39.5% | 60.5% |
Total tRNA-coding genes (size: 1511 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 546 | 964 | 315 | 231 | 430 | 534 |
Base content per 1 kb (bases) | 361 | 638 | 208 | 153 | 285 | 353 |
Base content (%) | 36.1% | 63.8% |
Total rRNA-coding genes (size: 2528 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 1001 | 1527 | 557 | 444 | 588 | 939 |
Base content per 1 kb (bases) | 396 | 604 | 220 | 176 | 233 | 371 |
Base content (%) | 39.6% | 60.4% |
12S rRNA gene (size: 956 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 399 | 557 | 228 | 171 | 206 | 351 |
Base content per 1 kb (bases) | 417 | 583 | 238 | 179 | 215 | 367 |
Base content (%) | 41.7% | 58.3% |
16S rRNA gene (size: 1572 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 602 | 970 | 329 | 273 | 382 | 588 |
Base content per 1 kb (bases) | 383 | 617 | 209 | 174 | 243 | 374 |
Base content (%) | 38.3% | 61.7% |
ATP6 (size: 681 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 275 | 406 | 203 | 72 | 184 | 222 |
Base content per 1 kb (bases) | 404 | 596 | 298 | 106 | 270 | 326 |
Base content (%) | 40.4% | 59.6% |
ATP8 (size: 198 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 64 | 134 | 50 | 14 | 55 | 79 |
Base content per 1 kb (bases) | 323 | 677 | 253 | 71 | 278 | 399 |
Base content (%) | 32.3% | 67.7% |
COX1 (size: 1545 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 641 | 904 | 393 | 248 | 455 | 449 |
Base content per 1 kb (bases) | 415 | 585 | 254 | 161 | 294 | 291 |
Base content (%) | 41.5% | 58.5% |
COX2 (size: 684 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 256 | 428 | 162 | 94 | 190 | 238 |
Base content per 1 kb (bases) | 374 | 626 | 237 | 137 | 278 | 348 |
Base content (%) | 37.4% | 62.6% |
COX3 (size: 784 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 339 | 445 | 222 | 117 | 239 | 206 |
Base content per 1 kb (bases) | 432 | 568 | 283 | 149 | 305 | 263 |
Base content (%) | 43.2% | 56.8% |
CYTB (size: 1140 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 468 | 672 | 318 | 150 | 311 | 361 |
Base content per 1 kb (bases) | 411 | 589 | 279 | 132 | 273 | 317 |
Base content (%) | 41.1% | 58.9% |
ND1 (size: 956 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 379 | 577 | 273 | 106 | 269 | 308 |
Base content per 1 kb (bases) | 396 | 604 | 286 | 111 | 281 | 322 |
Base content (%) | 39.6% | 60.4% |
ND2 (size: 1042 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 370 | 672 | 291 | 79 | 286 | 386 |
Base content per 1 kb (bases) | 355 | 645 | 279 | 76 | 274 | 370 |
Base content (%) | 35.5% | 64.5% |
ND3 (size: 346 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 136 | 210 | 99 | 37 | 100 | 110 |
Base content per 1 kb (bases) | 393 | 607 | 286 | 107 | 289 | 318 |
Base content (%) | 39.3% | 60.7% |
ND4 (size: 1378 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 551 | 827 | 402 | 149 | 389 | 438 |
Base content per 1 kb (bases) | 400 | 600 | 292 | 108 | 282 | 318 |
Base content (%) | 40.0% | 60.0% |
ND4L (size: 297 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 114 | 183 | 80 | 34 | 88 | 95 |
Base content per 1 kb (bases) | 384 | 616 | 269 | 114 | 296 | 320 |
Base content (%) | 38.4% | 61.6% |
ND5 (size: 1821 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 718 | 1103 | 517 | 201 | 498 | 605 |
Base content per 1 kb (bases) | 394 | 606 | 284 | 110 | 273 | 332 |
Base content (%) | 39.4% | 60.6% |
ND6 (size: 528 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 188 | 340 | 151 | 37 | 115 | 225 |
Base content per 1 kb (bases) | 356 | 644 | 286 | 70 | 218 | 426 |
Base content (%) | 35.6% | 64.4% |
ATP6 (size: 681 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
15 | 10 | 7 | 5 | 10 | 19 | 2 | 8 | 9 | 0 | 1 | 1 | 7 | 0 | 10 | 2 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
4 | 0 | 0 | 1 | 8 | 7 | 0 | 1 | 3 | 6 | 1 | 2 | 6 | 5 | 0 | 3 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
6 | 15 | 1 | 3 | 1 | 7 | 0 | 2 | 3 | 0 | 2 | 1 | 0 | 1 | 11 | 2 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
4 | 3 | 0 | 0 | 1 | 4 | 0 | 0 | 2 | 2 | 0 | 0 | 0 | 1 | 0 | 2 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
40 | 68 | 82 | 37 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
23 | 65 | 38 | 101 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
9 | 70 | 102 | 46 |
ATP8 (size: 198 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MPQLDTSTWLTTILSMFLALFIIFQLKISKHDFYHNPELTTKVLKHNTPWETKWTKIYLPLLLPL* | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
3 | 2 | 1 | 3 | 0 | 6 | 0 | 4 | 2 | 0 | 0 | 0 | 1 | 0 | 2 | 2 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 1 | 2 | 0 | 0 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
1 | 7 | 1 | 0 | 0 | 2 | 1 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 2 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
2 | 2 | 0 | 0 | 2 | 5 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 3 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
6 | 19 | 24 | 17 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
3 | 18 | 20 | 25 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
5 | 13 | 35 | 13 |
COX1 (size: 1545 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
22 | 17 | 29 | 11 | 5 | 27 | 4 | 13 | 4 | 2 | 6 | 6 | 19 | 4 | 19 | 23 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
4 | 0 | 1 | 8 | 15 | 17 | 0 | 7 | 9 | 26 | 5 | 9 | 10 | 9 | 0 | 10 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
12 | 18 | 0 | 7 | 6 | 13 | 1 | 1 | 2 | 7 | 12 | 1 | 0 | 10 | 8 | 4 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
13 | 7 | 2 | 5 | 11 | 9 | 0 | 0 | 2 | 4 | 2 | 0 | 0 | 1 | 0 | 16 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
147 | 106 | 142 | 120 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
76 | 135 | 95 | 209 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
25 | 152 | 212 | 126 |
COX2 (size: 684 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
12 | 6 | 13 | 3 | 2 | 15 | 4 | 9 | 6 | 0 | 6 | 1 | 5 | 0 | 3 | 4 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
4 | 0 | 2 | 1 | 1 | 6 | 0 | 3 | 1 | 4 | 0 | 1 | 5 | 6 | 1 | 3 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
4 | 10 | 1 | 4 | 3 | 8 | 1 | 1 | 4 | 7 | 3 | 0 | 0 | 1 | 4 | 2 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
5 | 12 | 3 | 4 | 6 | 6 | 0 | 2 | 0 | 4 | 0 | 0 | 0 | 0 | 1 | 5 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
53 | 56 | 69 | 50 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
26 | 55 | 60 | 87 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
15 | 51 | 109 | 53 |
COX3 (size: 784 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
7 | 7 | 4 | 8 | 6 | 10 | 1 | 8 | 6 | 1 | 3 | 5 | 6 | 1 | 10 | 14 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
5 | 0 | 2 | 6 | 7 | 3 | 0 | 5 | 7 | 7 | 1 | 0 | 6 | 6 | 0 | 6 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
6 | 11 | 0 | 3 | 5 | 6 | 1 | 2 | 2 | 7 | 4 | 0 | 1 | 5 | 2 | 5 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
12 | 8 | 0 | 0 | 4 | 2 | 0 | 2 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 12 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
63 | 66 | 59 | 73 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
43 | 66 | 56 | 96 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
11 | 90 | 91 | 69 |
CYTB (size: 1140 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
20 | 20 | 17 | 4 | 16 | 25 | 3 | 7 | 4 | 2 | 0 | 11 | 11 | 0 | 7 | 18 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 1 | 3 | 2 | 5 | 15 | 0 | 2 | 5 | 14 | 3 | 4 | 5 | 14 | 0 | 3 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
7 | 16 | 1 | 4 | 3 | 11 | 0 | 0 | 3 | 11 | 4 | 1 | 0 | 5 | 13 | 2 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
10 | 5 | 1 | 4 | 7 | 9 | 0 | 0 | 1 | 7 | 0 | 1 | 0 | 0 | 0 | 11 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
85 | 97 | 117 | 81 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
52 | 90 | 77 | 161 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
13 | 131 | 167 | 69 |
ND1 (size: 956 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
20 | 13 | 17 | 4 | 12 | 27 | 2 | 11 | 7 | 0 | 0 | 4 | 8 | 1 | 7 | 13 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
1 | 1 | 0 | 5 | 10 | 13 | 0 | 0 | 5 | 5 | 2 | 4 | 10 | 8 | 0 | 2 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
4 | 15 | 0 | 1 | 5 | 13 | 0 | 0 | 3 | 5 | 7 | 0 | 0 | 5 | 7 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
3 | 11 | 0 | 1 | 2 | 7 | 0 | 1 | 0 | 7 | 0 | 0 | 0 | 0 | 0 | 9 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
67 | 85 | 94 | 72 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
33 | 90 | 55 | 140 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
6 | 98 | 158 | 56 |
ND2 (size: 1042 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
23 | 17 | 38 | 1 | 16 | 29 | 0 | 10 | 8 | 1 | 0 | 4 | 4 | 0 | 6 | 7 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 0 | 0 | 6 | 4 | 5 | 0 | 1 | 4 | 9 | 0 | 0 | 8 | 12 | 0 | 9 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
15 | 17 | 1 | 5 | 6 | 13 | 2 | 0 | 2 | 3 | 5 | 0 | 0 | 6 | 10 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
5 | 4 | 1 | 0 | 0 | 13 | 0 | 0 | 0 | 4 | 0 | 0 | 0 | 0 | 0 | 10 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
42 | 85 | 153 | 67 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
30 | 103 | 57 | 157 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
7 | 103 | 176 | 61 |
ND3 (size: 1042 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
23 | 17 | 38 | 1 | 16 | 29 | 0 | 10 | 8 | 1 | 0 | 4 | 4 | 0 | 6 | 7 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 0 | 0 | 6 | 4 | 5 | 0 | 1 | 4 | 9 | 0 | 0 | 8 | 12 | 0 | 9 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
15 | 17 | 1 | 5 | 6 | 13 | 2 | 0 | 2 | 3 | 5 | 0 | 0 | 6 | 10 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
5 | 4 | 1 | 0 | 0 | 13 | 0 | 0 | 0 | 4 | 0 | 0 | 0 | 0 | 0 | 10 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
42 | 85 | 153 | 67 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
30 | 103 | 57 | 157 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
7 | 103 | 176 | 61 |
ND4 (size: 1378 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
19 | 22 | 31 | 16 | 16 | 45 | 4 | 11 | 10 | 1 | 3 | 6 | 7 | 0 | 5 | 16 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
3 | 2 | 1 | 3 | 12 | 12 | 1 | 2 | 7 | 8 | 1 | 3 | 8 | 11 | 0 | 5 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
9 | 20 | 2 | 6 | 11 | 10 | 0 | 2 | 11 | 7 | 8 | 0 | 2 | 5 | 16 | 7 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
6 | 6 | 2 | 1 | 3 | 11 | 0 | 4 | 0 | 4 | 2 | 0 | 0 | 0 | 0 | 13 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
74 | 137 | 156 | 92 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
57 | 113 | 83 | 206 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
18 | 152 | 199 | 90 |
ND4L (size: 297 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
2 | 3 | 10 | 1 | 3 | 11 | 1 | 5 | 2 | 0 | 0 | 1 | 5 | 0 | 1 | 3 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 0 | 3 | 0 | 3 | 5 | 0 | 1 | 1 | 2 | 0 | 1 | 0 | 0 | 0 | 0 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
3 | 3 | 0 | 1 | 6 | 2 | 0 | 0 | 1 | 2 | 2 | 0 | 1 | 2 | 3 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
2 | 2 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
21 | 22 | 29 | 27 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
9 | 24 | 17 | 49 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
4 | 34 | 49 | 12 |
ND5 (size: 1821 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
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Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
25 | 31 | 35 | 10 | 17 | 41 | 3 | 16 | 15 | 4 | 6 | 9 | 6 | 0 | 15 | 31 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
5 | 2 | 3 | 7 | 14 | 20 | 2 | 0 | 10 | 17 | 1 | 1 | 12 | 11 | 1 | 8 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
19 | 27 | 2 | 7 | 13 | 14 | 2 | 4 | 5 | 12 | 6 | 1 | 1 | 10 | 27 | 3 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
11 | 11 | 1 | 2 | 8 | 21 | 2 | 0 | 4 | 4 | 0 | 0 | 0 | 1 | 0 | 11 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
114 | 137 | 221 | 135 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
62 | 160 | 134 | 251 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
25 | 220 | 250 | 112 |
ND6 (size: 528 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
14 | 0 | 6 | 1 | 0 | 1 | 0 | 11 | 1 | 0 | 13 | 0 | 4 | 8 | 13 | 1 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
7 | 1 | 0 | 4 | 1 | 0 | 2 | 11 | 1 | 2 | 12 | 3 | 0 | 0 | 0 | 5 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
0 | 1 | 1 | 4 | 1 | 1 | 1 | 5 | 0 | 8 | 2 | 1 | 4 | 3 | 0 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
0 | 2 | 6 | 4 | 0 | 3 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 3 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
70 | 7 | 47 | 52 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
37 | 24 | 32 | 83 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
44 | 6 | 36 | 90 |
Total protein-coding genes (size: 11400 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
185 | 150 | 214 | 73 | 109 | 267 | 25 | 115 | 77 | 11 | 39 | 48 | 86 | 14 | 104 | 137 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
40 | 7 | 16 | 46 | 85 | 105 | 5 | 33 | 53 | 103 | 26 | 30 | 74 | 87 | 2 | 60 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
87 | 166 | 10 | 45 | 61 | 102 | 10 | 17 | 38 | 70 | 59 | 5 | 9 | 55 | 106 | 27 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
73 | 79 | 16 | 22 | 46 | 93 | 5 | 10 | 11 | 39 | 4 | 1 | 0 | 5 | 2 | 99 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
806 | 919 | 1227 | 846 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
462 | 975 | 746 | 1615 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
184 | 1153 | 1638 | 823 |