Scientific name | Phelsuma guimbeaui |
Common name | Mauritius lowland forest day gecko |
Maximum lifespan | 7.10 years (Phelsuma guimbeaui@AnAge) |
Total mtDNA (size: 17533 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 6934 | 10599 | 4615 | 2319 | 4684 | 5915 |
Base content per 1 kb (bases) | 395 | 605 | 263 | 132 | 267 | 337 |
Base content (%) | 39.5% | 60.5% |
Total protein-coding genes (size: 11341 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 4521 | 6820 | 3164 | 1357 | 3014 | 3806 |
Base content per 1 kb (bases) | 399 | 601 | 279 | 120 | 266 | 336 |
Base content (%) | 39.9% | 60.1% |
Total tRNA-coding genes (size: 1524 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 600 | 924 | 351 | 249 | 412 | 512 |
Base content per 1 kb (bases) | 394 | 606 | 230 | 163 | 270 | 336 |
Base content (%) | 39.4% | 60.6% |
Total rRNA-coding genes (size: 2497 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 1006 | 1491 | 589 | 417 | 564 | 927 |
Base content per 1 kb (bases) | 403 | 597 | 236 | 167 | 226 | 371 |
Base content (%) | 40.3% | 59.7% |
12S rRNA gene (size: 948 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 388 | 560 | 224 | 164 | 220 | 340 |
Base content per 1 kb (bases) | 409 | 591 | 236 | 173 | 232 | 359 |
Base content (%) | 40.9% | 59.1% |
16S rRNA gene (size: 1549 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 618 | 931 | 365 | 253 | 344 | 587 |
Base content per 1 kb (bases) | 399 | 601 | 236 | 163 | 222 | 379 |
Base content (%) | 39.9% | 60.1% |
ATP6 (size: 681 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 243 | 438 | 181 | 62 | 202 | 236 |
Base content per 1 kb (bases) | 357 | 643 | 266 | 91 | 297 | 347 |
Base content (%) | 35.7% | 64.3% |
ATP8 (size: 165 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 63 | 102 | 48 | 15 | 44 | 58 |
Base content per 1 kb (bases) | 382 | 618 | 291 | 91 | 267 | 352 |
Base content (%) | 38.2% | 61.8% |
COX1 (size: 1590 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 675 | 915 | 422 | 253 | 473 | 442 |
Base content per 1 kb (bases) | 425 | 575 | 265 | 159 | 297 | 278 |
Base content (%) | 42.5% | 57.5% |
COX2 (size: 688 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 283 | 405 | 181 | 102 | 166 | 239 |
Base content per 1 kb (bases) | 411 | 589 | 263 | 148 | 241 | 347 |
Base content (%) | 41.1% | 58.9% |
COX3 (size: 784 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 339 | 445 | 221 | 118 | 217 | 228 |
Base content per 1 kb (bases) | 432 | 568 | 282 | 151 | 277 | 291 |
Base content (%) | 43.2% | 56.8% |
CYTB (size: 1137 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 479 | 658 | 326 | 153 | 318 | 340 |
Base content per 1 kb (bases) | 421 | 579 | 287 | 135 | 280 | 299 |
Base content (%) | 42.1% | 57.9% |
ND1 (size: 969 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 376 | 593 | 251 | 125 | 269 | 324 |
Base content per 1 kb (bases) | 388 | 612 | 259 | 129 | 278 | 334 |
Base content (%) | 38.8% | 61.2% |
ND2 (size: 1033 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 377 | 656 | 291 | 86 | 265 | 391 |
Base content per 1 kb (bases) | 365 | 635 | 282 | 83 | 257 | 379 |
Base content (%) | 36.5% | 63.5% |
ND3 (size: 346 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 130 | 216 | 91 | 39 | 106 | 110 |
Base content per 1 kb (bases) | 376 | 624 | 263 | 113 | 306 | 318 |
Base content (%) | 37.6% | 62.4% |
ND4 (size: 1365 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 532 | 833 | 399 | 133 | 360 | 473 |
Base content per 1 kb (bases) | 390 | 610 | 292 | 97 | 264 | 347 |
Base content (%) | 39.0% | 61.0% |
ND4L (size: 297 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 121 | 176 | 82 | 39 | 82 | 94 |
Base content per 1 kb (bases) | 407 | 593 | 276 | 131 | 276 | 316 |
Base content (%) | 40.7% | 59.3% |
ND5 (size: 1791 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 703 | 1088 | 510 | 193 | 441 | 647 |
Base content per 1 kb (bases) | 393 | 607 | 285 | 108 | 246 | 361 |
Base content (%) | 39.3% | 60.7% |
ND6 (size: 519 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 208 | 311 | 164 | 44 | 76 | 235 |
Base content per 1 kb (bases) | 401 | 599 | 316 | 85 | 146 | 453 |
Base content (%) | 40.1% | 59.9% |
ATP6 (size: 681 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
9 | 6 | 12 | 7 | 2 | 26 | 4 | 15 | 7 | 0 | 3 | 0 | 8 | 0 | 10 | 3 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
3 | 0 | 0 | 3 | 7 | 9 | 0 | 0 | 1 | 3 | 0 | 1 | 1 | 13 | 0 | 4 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
7 | 15 | 0 | 1 | 0 | 6 | 0 | 1 | 3 | 5 | 2 | 0 | 1 | 1 | 7 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
3 | 2 | 1 | 0 | 1 | 5 | 0 | 1 | 1 | 3 | 0 | 0 | 0 | 1 | 0 | 2 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
38 | 70 | 73 | 46 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
15 | 67 | 36 | 109 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
9 | 44 | 127 | 47 |
ATP8 (size: 165 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MPQLNPAPWLMTFIMSWTALFMIHNTMMKFYPINLIQHTHIQYQLTTPWTWSWQ* | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
4 | 1 | 3 | 2 | 1 | 1 | 0 | 1 | 4 | 1 | 0 | 0 | 0 | 0 | 0 | 3 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
3 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 2 | 2 | 2 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
3 | 2 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 1 | 1 | 1 | 0 | 1 | 2 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
2 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 4 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
2 | 17 | 22 | 14 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
5 | 16 | 15 | 19 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
8 | 15 | 21 | 11 |
COX1 (size: 1590 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
21 | 17 | 30 | 11 | 8 | 22 | 6 | 15 | 7 | 0 | 8 | 5 | 19 | 5 | 20 | 22 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 0 | 2 | 8 | 16 | 17 | 1 | 10 | 19 | 12 | 5 | 5 | 12 | 14 | 0 | 10 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
13 | 14 | 0 | 8 | 8 | 12 | 0 | 2 | 3 | 7 | 10 | 1 | 2 | 7 | 9 | 12 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
10 | 9 | 1 | 6 | 8 | 12 | 2 | 2 | 6 | 1 | 0 | 0 | 0 | 0 | 1 | 15 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
149 | 116 | 142 | 123 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
78 | 138 | 101 | 213 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
26 | 168 | 199 | 137 |
COX2 (size: 688 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
9 | 5 | 15 | 5 | 2 | 11 | 4 | 6 | 10 | 0 | 2 | 0 | 11 | 2 | 4 | 4 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 0 | 2 | 2 | 4 | 10 | 1 | 1 | 1 | 4 | 2 | 1 | 3 | 10 | 0 | 2 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
4 | 13 | 0 | 1 | 3 | 7 | 0 | 2 | 6 | 3 | 6 | 1 | 1 | 2 | 3 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
8 | 9 | 0 | 3 | 10 | 3 | 0 | 2 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 4 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
62 | 59 | 66 | 42 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
27 | 61 | 58 | 83 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
13 | 61 | 115 | 40 |
COX3 (size: 784 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
6 | 10 | 9 | 4 | 0 | 20 | 1 | 6 | 6 | 0 | 5 | 7 | 3 | 1 | 9 | 16 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 1 | 1 | 3 | 6 | 9 | 0 | 3 | 6 | 10 | 1 | 2 | 1 | 8 | 0 | 7 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
10 | 12 | 0 | 1 | 3 | 7 | 0 | 0 | 4 | 3 | 6 | 1 | 0 | 0 | 5 | 5 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
10 | 7 | 1 | 2 | 2 | 1 | 1 | 0 | 3 | 2 | 0 | 0 | 0 | 0 | 0 | 12 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
66 | 62 | 67 | 66 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
44 | 69 | 49 | 99 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
8 | 90 | 112 | 51 |
CYTB (size: 1137 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
11 | 23 | 15 | 12 | 4 | 23 | 2 | 12 | 8 | 1 | 2 | 4 | 12 | 2 | 14 | 17 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
1 | 1 | 2 | 3 | 16 | 8 | 2 | 2 | 9 | 12 | 1 | 1 | 8 | 16 | 0 | 3 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
8 | 10 | 0 | 5 | 6 | 8 | 0 | 1 | 3 | 6 | 9 | 3 | 0 | 6 | 15 | 3 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
7 | 6 | 2 | 2 | 4 | 10 | 0 | 0 | 3 | 5 | 1 | 0 | 0 | 1 | 0 | 8 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
87 | 94 | 106 | 92 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
51 | 94 | 80 | 154 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
15 | 138 | 154 | 72 |
ND1 (size: 969 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
12 | 10 | 22 | 5 | 6 | 28 | 3 | 12 | 9 | 0 | 3 | 3 | 7 | 1 | 8 | 9 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 1 | 0 | 3 | 5 | 13 | 1 | 0 | 7 | 8 | 1 | 1 | 5 | 16 | 0 | 3 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
9 | 11 | 0 | 2 | 5 | 16 | 0 | 1 | 3 | 6 | 5 | 1 | 5 | 5 | 5 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
1 | 11 | 1 | 1 | 4 | 8 | 0 | 1 | 2 | 5 | 0 | 0 | 0 | 0 | 1 | 10 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
69 | 82 | 91 | 81 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
40 | 90 | 57 | 136 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
16 | 79 | 176 | 52 |
ND2 (size: 1033 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
17 | 12 | 38 | 5 | 4 | 24 | 3 | 18 | 8 | 0 | 1 | 1 | 3 | 0 | 5 | 8 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
3 | 1 | 2 | 1 | 7 | 9 | 0 | 0 | 3 | 10 | 0 | 3 | 6 | 14 | 0 | 9 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
20 | 24 | 0 | 1 | 6 | 12 | 0 | 2 | 7 | 2 | 8 | 1 | 0 | 1 | 7 | 2 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
6 | 5 | 0 | 0 | 2 | 12 | 0 | 1 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 7 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
42 | 79 | 152 | 71 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
37 | 112 | 53 | 142 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
7 | 100 | 186 | 51 |
ND3 (size: 1033 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
17 | 12 | 38 | 5 | 4 | 24 | 3 | 18 | 8 | 0 | 1 | 1 | 3 | 0 | 5 | 8 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
3 | 1 | 2 | 1 | 7 | 9 | 0 | 0 | 3 | 10 | 0 | 3 | 6 | 14 | 0 | 9 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
20 | 24 | 0 | 1 | 6 | 12 | 0 | 2 | 7 | 2 | 8 | 1 | 0 | 1 | 7 | 2 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
6 | 5 | 0 | 0 | 2 | 12 | 0 | 1 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 7 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
42 | 79 | 152 | 71 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
37 | 112 | 53 | 142 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
7 | 100 | 186 | 51 |
ND4 (size: 1365 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
25 | 21 | 30 | 14 | 8 | 47 | 3 | 15 | 11 | 0 | 4 | 1 | 4 | 0 | 6 | 9 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
3 | 1 | 2 | 6 | 9 | 18 | 0 | 1 | 5 | 10 | 2 | 2 | 8 | 19 | 0 | 5 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
19 | 30 | 5 | 2 | 6 | 10 | 1 | 2 | 2 | 6 | 10 | 1 | 1 | 8 | 11 | 6 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
8 | 4 | 3 | 1 | 3 | 9 | 0 | 0 | 3 | 5 | 0 | 0 | 0 | 1 | 0 | 9 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
71 | 134 | 170 | 80 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
43 | 140 | 81 | 191 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
19 | 125 | 222 | 89 |
ND4L (size: 297 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
7 | 4 | 5 | 5 | 1 | 6 | 2 | 4 | 1 | 0 | 0 | 2 | 1 | 1 | 1 | 2 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
1 | 2 | 1 | 0 | 2 | 6 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | 1 | 0 | 1 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
6 | 8 | 0 | 1 | 3 | 1 | 0 | 2 | 3 | 1 | 0 | 0 | 0 | 0 | 2 | 2 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
3 | 1 | 1 | 1 | 0 | 2 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
18 | 23 | 41 | 17 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
13 | 29 | 15 | 42 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
8 | 30 | 38 | 23 |
ND5 (size: 1791 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
21 | 23 | 42 | 15 | 9 | 58 | 4 | 17 | 19 | 1 | 5 | 2 | 7 | 0 | 13 | 15 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
6 | 1 | 4 | 6 | 14 | 19 | 2 | 3 | 12 | 10 | 2 | 1 | 4 | 22 | 1 | 8 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
30 | 31 | 0 | 1 | 14 | 17 | 0 | 2 | 5 | 5 | 9 | 1 | 0 | 9 | 20 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
12 | 11 | 1 | 4 | 8 | 22 | 5 | 0 | 2 | 8 | 0 | 0 | 1 | 0 | 0 | 12 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
106 | 157 | 225 | 109 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
63 | 170 | 127 | 237 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
24 | 183 | 295 | 95 |
ND6 (size: 519 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
6 | 0 | 2 | 4 | 0 | 1 | 1 | 8 | 0 | 0 | 16 | 1 | 5 | 5 | 13 | 0 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
6 | 4 | 0 | 5 | 0 | 1 | 1 | 13 | 0 | 2 | 12 | 2 | 1 | 1 | 1 | 1 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
0 | 1 | 1 | 2 | 0 | 1 | 3 | 3 | 2 | 10 | 3 | 3 | 16 | 4 | 0 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
0 | 1 | 2 | 1 | 1 | 0 | 1 | 2 | 0 | 1 | 1 | 0 | 0 | 0 | 1 | 1 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
66 | 15 | 27 | 65 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
44 | 21 | 24 | 84 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
54 | 8 | 25 | 86 |
Total protein-coding genes (size: 11365 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
160 | 136 | 227 | 90 | 46 | 279 | 33 | 135 | 92 | 3 | 49 | 26 | 80 | 17 | 107 | 113 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
34 | 13 | 16 | 42 | 92 | 120 | 9 | 33 | 65 | 83 | 30 | 19 | 53 | 141 | 4 | 58 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
132 | 177 | 6 | 25 | 56 | 100 | 4 | 19 | 41 | 57 | 71 | 15 | 27 | 44 | 88 | 34 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
71 | 72 | 13 | 21 | 46 | 87 | 9 | 9 | 22 | 37 | 2 | 0 | 1 | 5 | 3 | 88 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
798 | 935 | 1219 | 835 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
474 | 1038 | 716 | 1559 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
210 | 1074 | 1723 | 780 |
Failed to understand id: ?term=("Phelsuma guimbeaui"[Organism]) AND (refseq[filter] AND mitochondrion[filter])