Viewing data for Macaca mulatta
| Scientific name | Macaca mulatta |
| Common name | Rhesus monkey |
| Maximum lifespan | 40.00 years (Macaca mulatta@AnAge) |
| Total mtDNA (size: 16564 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 7160 | 9404 | 5037 | 2123 | 4150 | 5254 |
| Base content per 1 kb (bases) | 432 | 568 | 304 | 128 | 251 | 317 |
| Base content (%) | 43.2% | 56.8% | ||||
| Total protein-coding genes (size: 11344 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 4940 | 6404 | 3657 | 1283 | 2893 | 3511 |
| Base content per 1 kb (bases) | 435 | 565 | 322 | 113 | 255 | 310 |
| Base content (%) | 43.5% | 56.5% | ||||
| D-loop (size: 1085 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 476 | 609 | 341 | 135 | 288 | 321 |
| Base content per 1 kb (bases) | 439 | 561 | 314 | 124 | 265 | 296 |
| Base content (%) | 43.9% | 56.1% | ||||
| Total tRNA-coding genes (size: 1504 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 593 | 911 | 358 | 235 | 391 | 520 |
| Base content per 1 kb (bases) | 394 | 606 | 238 | 156 | 260 | 346 |
| Base content (%) | 39.4% | 60.6% | ||||
| Total rRNA-coding genes (size: 2505 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 1084 | 1421 | 626 | 458 | 557 | 864 |
| Base content per 1 kb (bases) | 433 | 567 | 250 | 183 | 222 | 345 |
| Base content (%) | 43.3% | 56.7% | ||||
| 12S rRNA gene (size: 947 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 420 | 527 | 235 | 185 | 217 | 310 |
| Base content per 1 kb (bases) | 444 | 556 | 248 | 195 | 229 | 327 |
| Base content (%) | 44.4% | 55.6% | ||||
| 16S rRNA gene (size: 1558 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 664 | 894 | 391 | 273 | 340 | 554 |
| Base content per 1 kb (bases) | 426 | 574 | 251 | 175 | 218 | 356 |
| Base content (%) | 42.6% | 57.4% | ||||
| ATP6 (size: 681 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 293 | 388 | 222 | 71 | 170 | 218 |
| Base content per 1 kb (bases) | 430 | 570 | 326 | 104 | 250 | 320 |
| Base content (%) | 43.0% | 57.0% | ||||
| ATP8 (size: 207 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 88 | 119 | 70 | 18 | 48 | 71 |
| Base content per 1 kb (bases) | 425 | 575 | 338 | 87 | 232 | 343 |
| Base content (%) | 42.5% | 57.5% | ||||
| COX1 (size: 1539 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 684 | 855 | 440 | 244 | 445 | 410 |
| Base content per 1 kb (bases) | 444 | 556 | 286 | 159 | 289 | 266 |
| Base content (%) | 44.4% | 55.6% | ||||
| COX2 (size: 684 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 291 | 393 | 195 | 96 | 178 | 215 |
| Base content per 1 kb (bases) | 425 | 575 | 285 | 140 | 260 | 314 |
| Base content (%) | 42.5% | 57.5% | ||||
| COX3 (size: 784 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 360 | 424 | 254 | 106 | 206 | 218 |
| Base content per 1 kb (bases) | 459 | 541 | 324 | 135 | 263 | 278 |
| Base content (%) | 45.9% | 54.1% | ||||
| CYTB (size: 1141 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 522 | 619 | 388 | 134 | 287 | 332 |
| Base content per 1 kb (bases) | 457 | 543 | 340 | 117 | 252 | 291 |
| Base content (%) | 45.7% | 54.3% | ||||
| ND1 (size: 957 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 438 | 519 | 328 | 110 | 234 | 285 |
| Base content per 1 kb (bases) | 458 | 542 | 343 | 115 | 245 | 298 |
| Base content (%) | 45.8% | 54.2% | ||||
| ND2 (size: 1044 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 449 | 595 | 362 | 87 | 242 | 353 |
| Base content per 1 kb (bases) | 430 | 570 | 347 | 83 | 232 | 338 |
| Base content (%) | 43.0% | 57.0% | ||||
| ND3 (size: 346 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 142 | 204 | 103 | 39 | 96 | 108 |
| Base content per 1 kb (bases) | 410 | 590 | 298 | 113 | 277 | 312 |
| Base content (%) | 41.0% | 59.0% | ||||
| ND4 (size: 1378 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 579 | 799 | 445 | 134 | 366 | 433 |
| Base content per 1 kb (bases) | 420 | 580 | 323 | 97 | 266 | 314 |
| Base content (%) | 42.0% | 58.0% | ||||
| ND4L (size: 297 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 125 | 172 | 91 | 34 | 88 | 84 |
| Base content per 1 kb (bases) | 421 | 579 | 306 | 114 | 296 | 283 |
| Base content (%) | 42.1% | 57.9% | ||||
| ND5 (size: 1812 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 771 | 1041 | 590 | 181 | 457 | 584 |
| Base content per 1 kb (bases) | 425 | 575 | 326 | 100 | 252 | 322 |
| Base content (%) | 42.5% | 57.5% | ||||
| ND6 (size: 528 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 218 | 310 | 184 | 34 | 91 | 219 |
| Base content per 1 kb (bases) | 413 | 587 | 348 | 64 | 172 | 415 |
| Base content (%) | 41.3% | 58.7% | ||||
| ATP6 (size: 681 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
Amino acid frequencies:
Glycine (Gly, G)
n = 7 (3.1%) 
Alanine (Ala, A)
n = 20 (8.85%) 
Serine (Ser, S)
n = 11 (4.87%) 
Threonine (Thr, T)
n = 32 (14.16%) 
Cysteine (Cys, C)
n = 0 (0%) 
Valine (Val, V)
n = 9 (3.98%) 
Leucine (Leu, L)
n = 46 (20.35%) 
Isoleucine (Ile, I)
n = 19 (8.41%) 
Methionine (Met, M)
n = 12 (5.31%) 
Proline (Pro, P)
n = 15 (6.64%) 
Phenylalanine (Phe, F)
n = 8 (3.54%) 
Tyrosine (Tyr, Y)
n = 3 (1.33%) 
Tryptophan (Trp, W)
n = 2 (0.88%) 
Aspartic acid (Asp, D)
n = 0 (0%) 
Glutamic acid (Glu, E)
n = 3 (1.33%) 
Asparagine (Asn, N)
n = 15 (6.64%) 
Glutamine (Gln, Q)
n = 9 (3.98%) 
Histidine (His, H)
n = 5 (2.21%) 
Lysine (Lys, K)
n = 5 (2.21%) 
Arginine (Arg, R)
n = 5 (2.21%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 10 | 9 | 9 | 6 | 5 | 25 | 4 | 5 | 9 | 0 | 0 | 1 | 6 | 2 | 3 | 5 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 0 | 0 | 7 | 7 | 5 | 1 | 0 | 3 | 3 | 1 | 4 | 7 | 4 | 0 | 8 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 12 | 11 | 1 | 1 | 5 | 2 | 1 | 1 | 1 | 2 | 1 | 0 | 1 | 3 | 12 | 2 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 3 | 0 | 0 | 0 | 4 | 1 | 0 | 1 | 3 | 1 | 0 | 0 | 1 | 0 | 2 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 39 | 74 | 85 | 29 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 16 | 76 | 41 | 94 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 16 | 72 | 92 | 47 | ||||||||||||
| ATP8 (size: 207 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: MPQLDTSTWFTTIMTMLPTLYLIMQLKLLNTNHHQPPLTKTPTLQSHNVRWQPKWTKTCLPLSQPQQF* | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 0 (0%)
Serine (Ser, S)
n = 3 (4.41%)
Threonine (Thr, T)
n = 12 (17.65%)
Cysteine (Cys, C)
n = 1 (1.47%)
Valine (Val, V)
n = 1 (1.47%)
Leucine (Leu, L)
n = 11 (16.18%)
Isoleucine (Ile, I)
n = 2 (2.94%)
Methionine (Met, M)
n = 4 (5.88%)
Proline (Pro, P)
n = 8 (11.76%)
Phenylalanine (Phe, F)
n = 2 (2.94%)
Tyrosine (Tyr, Y)
n = 1 (1.47%)
Tryptophan (Trp, W)
n = 3 (4.41%)
Aspartic acid (Asp, D)
n = 1 (1.47%)
Glutamic acid (Glu, E)
n = 0 (0%)
Asparagine (Asn, N)
n = 3 (4.41%)
Glutamine (Gln, Q)
n = 8 (11.76%)
Histidine (His, H)
n = 3 (4.41%)
Lysine (Lys, K)
n = 4 (5.88%)
Arginine (Arg, R)
n = 1 (1.47%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 1 | 1 | 0 | 5 | 0 | 4 | 0 | 2 | 4 | 4 | 0 | 1 | 0 | 0 | 0 | 2 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 6 | 2 | 0 | 2 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 3 | 5 | 2 | 2 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 2 | 1 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 0 | 0 | 1 | 0 | 3 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 3 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 2 | 29 | 25 | 13 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 5 | 23 | 21 | 20 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 11 | 18 | 25 | 15 | ||||||||||||
| COX1 (size: 1539 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.18%)
Alanine (Ala, A)
n = 38 (7.42%)
Serine (Ser, S)
n = 30 (5.86%)
Threonine (Thr, T)
n = 33 (6.45%)
Cysteine (Cys, C)
n = 2 (0.39%)
Valine (Val, V)
n = 33 (6.45%)
Leucine (Leu, L)
n = 64 (12.5%)
Isoleucine (Ile, I)
n = 44 (8.59%)
Methionine (Met, M)
n = 29 (5.66%)
Proline (Pro, P)
n = 31 (6.05%)
Phenylalanine (Phe, F)
n = 41 (8.01%)
Tyrosine (Tyr, Y)
n = 20 (3.91%)
Tryptophan (Trp, W)
n = 16 (3.13%)
Aspartic acid (Asp, D)
n = 13 (2.54%)
Glutamic acid (Glu, E)
n = 9 (1.76%)
Asparagine (Asn, N)
n = 20 (3.91%)
Glutamine (Gln, Q)
n = 7 (1.37%)
Histidine (His, H)
n = 18 (3.52%)
Lysine (Lys, K)
n = 10 (1.95%)
Arginine (Arg, R)
n = 8 (1.56%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 20 | 24 | 21 | 8 | 10 | 32 | 4 | 10 | 7 | 0 | 8 | 7 | 16 | 2 | 18 | 23 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 8 | 1 | 1 | 7 | 19 | 12 | 0 | 7 | 19 | 13 | 8 | 7 | 16 | 6 | 2 | 8 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 11 | 13 | 1 | 8 | 10 | 9 | 0 | 0 | 3 | 7 | 13 | 2 | 0 | 7 | 13 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 15 | 8 | 1 | 7 | 6 | 10 | 0 | 2 | 3 | 3 | 0 | 0 | 0 | 0 | 0 | 14 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 140 | 118 | 139 | 116 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 76 | 129 | 97 | 211 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 28 | 193 | 174 | 118 | ||||||||||||
| COX2 (size: 684 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.96%)
Alanine (Ala, A)
n = 13 (5.73%)
Serine (Ser, S)
n = 15 (6.61%)
Threonine (Thr, T)
n = 22 (9.69%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 14 (6.17%)
Leucine (Leu, L)
n = 32 (14.1%)
Isoleucine (Ile, I)
n = 20 (8.81%)
Methionine (Met, M)
n = 10 (4.41%)
Proline (Pro, P)
n = 16 (7.05%)
Phenylalanine (Phe, F)
n = 10 (4.41%)
Tyrosine (Tyr, Y)
n = 9 (3.96%)
Tryptophan (Trp, W)
n = 4 (1.76%)
Aspartic acid (Asp, D)
n = 10 (4.41%)
Glutamic acid (Glu, E)
n = 11 (4.85%)
Asparagine (Asn, N)
n = 7 (3.08%)
Glutamine (Gln, Q)
n = 7 (3.08%)
Histidine (His, H)
n = 6 (2.64%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 6 (2.64%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 7 | 13 | 9 | 1 | 5 | 18 | 3 | 5 | 6 | 1 | 5 | 4 | 5 | 0 | 3 | 7 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 1 | 1 | 4 | 6 | 3 | 0 | 0 | 3 | 3 | 3 | 5 | 2 | 9 | 0 | 6 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 4 | 10 | 2 | 3 | 3 | 4 | 0 | 0 | 5 | 3 | 6 | 0 | 0 | 5 | 2 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 9 | 2 | 2 | 8 | 4 | 0 | 3 | 0 | 2 | 1 | 0 | 0 | 1 | 0 | 4 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 57 | 62 | 68 | 41 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 26 | 61 | 55 | 86 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 13 | 72 | 92 | 51 | ||||||||||||
| COX3 (size: 784 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 18 (6.92%)
Alanine (Ala, A)
n = 13 (5.0%)
Serine (Ser, S)
n = 19 (7.31%)
Threonine (Thr, T)
n = 29 (11.15%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 13 (5.0%)
Leucine (Leu, L)
n = 35 (13.46%)
Isoleucine (Ile, I)
n = 17 (6.54%)
Methionine (Met, M)
n = 8 (3.08%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 22 (8.46%)
Tyrosine (Tyr, Y)
n = 12 (4.62%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 4 (1.54%)
Glutamic acid (Glu, E)
n = 6 (2.31%)
Asparagine (Asn, N)
n = 6 (2.31%)
Glutamine (Gln, Q)
n = 8 (3.08%)
Histidine (His, H)
n = 17 (6.54%)
Lysine (Lys, K)
n = 3 (1.15%)
Arginine (Arg, R)
n = 5 (1.92%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 6 | 11 | 6 | 3 | 9 | 16 | 2 | 5 | 7 | 1 | 4 | 5 | 3 | 1 | 5 | 17 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 2 | 5 | 4 | 4 | 0 | 1 | 10 | 7 | 0 | 1 | 7 | 3 | 1 | 0 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 13 | 16 | 0 | 3 | 5 | 5 | 1 | 2 | 3 | 5 | 7 | 1 | 0 | 1 | 5 | 4 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 13 | 6 | 0 | 3 | 1 | 3 | 0 | 0 | 2 | 2 | 1 | 0 | 0 | 0 | 0 | 11 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 54 | 72 | 68 | 67 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 42 | 68 | 56 | 95 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 10 | 114 | 94 | 43 | ||||||||||||
| CYTB (size: 1141 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 21 (5.54%)
Alanine (Ala, A)
n = 22 (5.8%)
Serine (Ser, S)
n = 27 (7.12%)
Threonine (Thr, T)
n = 31 (8.18%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 10 (2.64%)
Leucine (Leu, L)
n = 67 (17.68%)
Isoleucine (Ile, I)
n = 41 (10.82%)
Methionine (Met, M)
n = 17 (4.49%)
Proline (Pro, P)
n = 25 (6.6%)
Phenylalanine (Phe, F)
n = 21 (5.54%)
Tyrosine (Tyr, Y)
n = 15 (3.96%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 10 (2.64%)
Glutamic acid (Glu, E)
n = 5 (1.32%)
Asparagine (Asn, N)
n = 17 (4.49%)
Glutamine (Gln, Q)
n = 8 (2.11%)
Histidine (His, H)
n = 10 (2.64%)
Lysine (Lys, K)
n = 10 (2.64%)
Arginine (Arg, R)
n = 8 (2.11%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 10 | 31 | 15 | 10 | 20 | 27 | 5 | 4 | 8 | 0 | 1 | 3 | 5 | 1 | 5 | 16 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 3 | 1 | 11 | 10 | 0 | 4 | 9 | 8 | 0 | 3 | 8 | 13 | 1 | 7 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 10 | 13 | 1 | 1 | 12 | 9 | 1 | 0 | 4 | 2 | 13 | 2 | 1 | 3 | 14 | 2 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 8 | 4 | 1 | 2 | 8 | 8 | 2 | 0 | 4 | 3 | 1 | 0 | 0 | 0 | 0 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 68 | 113 | 120 | 79 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 48 | 101 | 75 | 156 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 18 | 174 | 137 | 51 | ||||||||||||
| ND1 (size: 957 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.77%)
Alanine (Ala, A)
n = 29 (9.12%)
Serine (Ser, S)
n = 22 (6.92%)
Threonine (Thr, T)
n = 33 (10.38%)
Cysteine (Cys, C)
n = 2 (0.63%)
Valine (Val, V)
n = 11 (3.46%)
Leucine (Leu, L)
n = 60 (18.87%)
Isoleucine (Ile, I)
n = 21 (6.6%)
Methionine (Met, M)
n = 17 (5.35%)
Proline (Pro, P)
n = 20 (6.29%)
Phenylalanine (Phe, F)
n = 21 (6.6%)
Tyrosine (Tyr, Y)
n = 9 (2.83%)
Tryptophan (Trp, W)
n = 9 (2.83%)
Aspartic acid (Asp, D)
n = 3 (0.94%)
Glutamic acid (Glu, E)
n = 11 (3.46%)
Asparagine (Asn, N)
n = 14 (4.4%)
Glutamine (Gln, Q)
n = 6 (1.89%)
Histidine (His, H)
n = 4 (1.26%)
Lysine (Lys, K)
n = 7 (2.2%)
Arginine (Arg, R)
n = 7 (2.2%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 8 | 13 | 15 | 5 | 18 | 31 | 2 | 4 | 6 | 0 | 1 | 6 | 4 | 0 | 4 | 17 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 2 | 3 | 16 | 10 | 0 | 2 | 5 | 3 | 2 | 3 | 13 | 4 | 0 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 12 | 17 | 1 | 1 | 7 | 11 | 0 | 0 | 3 | 3 | 6 | 0 | 0 | 2 | 12 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 9 | 2 | 2 | 1 | 7 | 0 | 1 | 0 | 5 | 1 | 0 | 0 | 0 | 1 | 9 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 66 | 93 | 95 | 65 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 33 | 101 | 55 | 130 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 11 | 134 | 135 | 39 | ||||||||||||
| ND2 (size: 1044 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.03%)
Alanine (Ala, A)
n = 15 (4.32%)
Serine (Ser, S)
n = 29 (8.36%)
Threonine (Thr, T)
n = 54 (15.56%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 5 (1.44%)
Leucine (Leu, L)
n = 62 (17.87%)
Isoleucine (Ile, I)
n = 34 (9.8%)
Methionine (Met, M)
n = 25 (7.2%)
Proline (Pro, P)
n = 23 (6.63%)
Phenylalanine (Phe, F)
n = 11 (3.17%)
Tyrosine (Tyr, Y)
n = 11 (3.17%)
Tryptophan (Trp, W)
n = 10 (2.88%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 17 (4.9%)
Glutamine (Gln, Q)
n = 10 (2.88%)
Histidine (His, H)
n = 7 (2.02%)
Lysine (Lys, K)
n = 10 (2.88%)
Arginine (Arg, R)
n = 4 (1.15%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 11 | 23 | 21 | 8 | 16 | 32 | 1 | 5 | 10 | 0 | 0 | 3 | 2 | 0 | 2 | 9 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 0 | 1 | 3 | 6 | 6 | 0 | 3 | 5 | 4 | 2 | 2 | 11 | 8 | 2 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 21 | 26 | 2 | 5 | 10 | 8 | 0 | 1 | 5 | 2 | 9 | 0 | 0 | 1 | 16 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 7 | 5 | 0 | 0 | 0 | 9 | 1 | 0 | 4 | 0 | 0 | 0 | 0 | 0 | 1 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 39 | 101 | 146 | 62 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 35 | 115 | 61 | 137 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 13 | 146 | 146 | 43 | ||||||||||||
| ND3 (size: 1044 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.03%)
Alanine (Ala, A)
n = 15 (4.32%)
Serine (Ser, S)
n = 29 (8.36%)
Threonine (Thr, T)
n = 54 (15.56%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 5 (1.44%)
Leucine (Leu, L)
n = 62 (17.87%)
Isoleucine (Ile, I)
n = 34 (9.8%)
Methionine (Met, M)
n = 25 (7.2%)
Proline (Pro, P)
n = 23 (6.63%)
Phenylalanine (Phe, F)
n = 11 (3.17%)
Tyrosine (Tyr, Y)
n = 11 (3.17%)
Tryptophan (Trp, W)
n = 10 (2.88%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 17 (4.9%)
Glutamine (Gln, Q)
n = 10 (2.88%)
Histidine (His, H)
n = 7 (2.02%)
Lysine (Lys, K)
n = 10 (2.88%)
Arginine (Arg, R)
n = 4 (1.15%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 11 | 23 | 21 | 8 | 16 | 32 | 1 | 5 | 10 | 0 | 0 | 3 | 2 | 0 | 2 | 9 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 0 | 1 | 3 | 6 | 6 | 0 | 3 | 5 | 4 | 2 | 2 | 11 | 8 | 2 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 21 | 26 | 2 | 5 | 10 | 8 | 0 | 1 | 5 | 2 | 9 | 0 | 0 | 1 | 16 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 7 | 5 | 0 | 0 | 0 | 9 | 1 | 0 | 4 | 0 | 0 | 0 | 0 | 0 | 1 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 39 | 101 | 146 | 62 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 35 | 115 | 61 | 137 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 13 | 146 | 146 | 43 | ||||||||||||
| ND4 (size: 1378 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 17 (3.71%)
Alanine (Ala, A)
n = 25 (5.46%)
Serine (Ser, S)
n = 36 (7.86%)
Threonine (Thr, T)
n = 56 (12.23%)
Cysteine (Cys, C)
n = 3 (0.66%)
Valine (Val, V)
n = 7 (1.53%)
Leucine (Leu, L)
n = 91 (19.87%)
Isoleucine (Ile, I)
n = 39 (8.52%)
Methionine (Met, M)
n = 35 (7.64%)
Proline (Pro, P)
n = 23 (5.02%)
Phenylalanine (Phe, F)
n = 21 (4.59%)
Tyrosine (Tyr, Y)
n = 15 (3.28%)
Tryptophan (Trp, W)
n = 12 (2.62%)
Aspartic acid (Asp, D)
n = 3 (0.66%)
Glutamic acid (Glu, E)
n = 8 (1.75%)
Asparagine (Asn, N)
n = 23 (5.02%)
Glutamine (Gln, Q)
n = 10 (2.18%)
Histidine (His, H)
n = 15 (3.28%)
Lysine (Lys, K)
n = 12 (2.62%)
Arginine (Arg, R)
n = 8 (1.75%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 18 | 21 | 27 | 15 | 22 | 38 | 5 | 9 | 9 | 1 | 0 | 2 | 5 | 0 | 8 | 13 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 8 | 0 | 3 | 2 | 12 | 10 | 1 | 2 | 9 | 5 | 1 | 1 | 18 | 4 | 0 | 6 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 23 | 24 | 3 | 11 | 8 | 7 | 0 | 1 | 9 | 6 | 9 | 2 | 2 | 8 | 15 | 4 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 11 | 7 | 1 | 1 | 2 | 12 | 0 | 1 | 2 | 5 | 0 | 0 | 0 | 0 | 0 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 60 | 136 | 175 | 88 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 50 | 130 | 86 | 193 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 24 | 179 | 172 | 84 | ||||||||||||
| ND4L (size: 297 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 9 (9.18%)
Serine (Ser, S)
n = 7 (7.14%)
Threonine (Thr, T)
n = 7 (7.14%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 4 (4.08%)
Leucine (Leu, L)
n = 21 (21.43%)
Isoleucine (Ile, I)
n = 10 (10.2%)
Methionine (Met, M)
n = 9 (9.18%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 4 (4.08%)
Tyrosine (Tyr, Y)
n = 4 (4.08%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 6 (6.12%)
Glutamine (Gln, Q)
n = 1 (1.02%)
Histidine (His, H)
n = 3 (3.06%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 1 (1.02%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 5 | 5 | 7 | 5 | 3 | 10 | 1 | 1 | 1 | 0 | 0 | 1 | 3 | 0 | 2 | 2 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 1 | 2 | 1 | 6 | 2 | 0 | 2 | 0 | 2 | 0 | 0 | 2 | 0 | 0 | 0 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 4 | 3 | 0 | 2 | 1 | 3 | 1 | 0 | 0 | 1 | 3 | 0 | 1 | 0 | 6 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 1 | 1 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 20 | 26 | 32 | 21 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 8 | 25 | 18 | 48 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 6 | 40 | 34 | 19 | ||||||||||||
| ND5 (size: 1812 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 25 (4.15%)
Alanine (Ala, A)
n = 44 (7.3%)
Serine (Ser, S)
n = 44 (7.3%)
Threonine (Thr, T)
n = 66 (10.95%)
Cysteine (Cys, C)
n = 5 (0.83%)
Valine (Val, V)
n = 10 (1.66%)
Leucine (Leu, L)
n = 97 (16.09%)
Isoleucine (Ile, I)
n = 55 (9.12%)
Methionine (Met, M)
n = 42 (6.97%)
Proline (Pro, P)
n = 31 (5.14%)
Phenylalanine (Phe, F)
n = 37 (6.14%)
Tyrosine (Tyr, Y)
n = 18 (2.99%)
Tryptophan (Trp, W)
n = 13 (2.16%)
Aspartic acid (Asp, D)
n = 12 (1.99%)
Glutamic acid (Glu, E)
n = 9 (1.49%)
Asparagine (Asn, N)
n = 33 (5.47%)
Glutamine (Gln, Q)
n = 20 (3.32%)
Histidine (His, H)
n = 11 (1.82%)
Lysine (Lys, K)
n = 22 (3.65%)
Arginine (Arg, R)
n = 9 (1.49%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 21 | 34 | 38 | 17 | 26 | 42 | 2 | 9 | 20 | 0 | 0 | 4 | 5 | 1 | 10 | 27 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 0 | 5 | 8 | 23 | 13 | 0 | 2 | 13 | 9 | 1 | 3 | 15 | 13 | 0 | 12 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 28 | 25 | 1 | 5 | 13 | 12 | 3 | 1 | 10 | 6 | 12 | 2 | 1 | 5 | 28 | 4 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 7 | 7 | 2 | 3 | 9 | 21 | 1 | 2 | 4 | 3 | 0 | 0 | 0 | 1 | 0 | 11 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 100 | 158 | 229 | 117 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 63 | 174 | 126 | 241 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 18 | 258 | 229 | 99 | ||||||||||||
| ND6 (size: 528 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 28 (16.0%)
Alanine (Ala, A)
n = 9 (5.14%)
Serine (Ser, S)
n = 12 (6.86%)
Threonine (Thr, T)
n = 6 (3.43%)
Cysteine (Cys, C)
n = 2 (1.14%)
Valine (Val, V)
n = 28 (16.0%)
Leucine (Leu, L)
n = 22 (12.57%)
Isoleucine (Ile, I)
n = 11 (6.29%)
Methionine (Met, M)
n = 11 (6.29%)
Proline (Pro, P)
n = 3 (1.71%)
Phenylalanine (Phe, F)
n = 9 (5.14%)
Tyrosine (Tyr, Y)
n = 9 (5.14%)
Tryptophan (Trp, W)
n = 5 (2.86%)
Aspartic acid (Asp, D)
n = 5 (2.86%)
Glutamic acid (Glu, E)
n = 10 (5.71%)
Asparagine (Asn, N)
n = 1 (0.57%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 1 (0.57%)
Arginine (Arg, R)
n = 3 (1.71%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 11 | 0 | 2 | 1 | 0 | 0 | 2 | 13 | 0 | 0 | 15 | 0 | 3 | 10 | 9 | 0 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 9 | 2 | 0 | 3 | 1 | 2 | 3 | 15 | 0 | 1 | 12 | 3 | 0 | 0 | 0 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 0 | 2 | 1 | 4 | 0 | 1 | 1 | 6 | 0 | 9 | 0 | 4 | 6 | 1 | 0 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 0 | 2 | 8 | 5 | 0 | 0 | 1 | 1 | 0 | 1 | 1 | 0 | 1 | 0 | 0 | 1 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 80 | 9 | 37 | 50 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 45 | 24 | 26 | 81 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 59 | 1 | 28 | 88 | ||||||||||||
| Total protein-coding genes (size: 11398 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 204 (5.37%)
Alanine (Ala, A)
n = 244 (6.43%)
Serine (Ser, S)
n = 261 (6.87%)
Threonine (Thr, T)
n = 392 (10.32%)
Cysteine (Cys, C)
n = 27 (0.71%)
Valine (Val, V)
n = 147 (3.87%)
Leucine (Leu, L)
n = 631 (16.62%)
Isoleucine (Ile, I)
n = 327 (8.61%)
Methionine (Met, M)
n = 224 (5.9%)
Proline (Pro, P)
n = 217 (5.72%)
Phenylalanine (Phe, F)
n = 215 (5.66%)
Tyrosine (Tyr, Y)
n = 129 (3.4%)
Tryptophan (Trp, W)
n = 102 (2.69%)
Aspartic acid (Asp, D)
n = 65 (1.71%)
Glutamic acid (Glu, E)
n = 84 (2.21%)
Asparagine (Asn, N)
n = 167 (4.4%)
Glutamine (Gln, Q)
n = 97 (2.55%)
Histidine (His, H)
n = 99 (2.61%)
Lysine (Lys, K)
n = 92 (2.42%)
Arginine (Arg, R)
n = 66 (1.74%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 136 | 191 | 175 | 84 | 137 | 290 | 33 | 75 | 89 | 8 | 35 | 37 | 57 | 18 | 72 | 143 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 49 | 6 | 21 | 45 | 117 | 77 | 5 | 38 | 76 | 59 | 31 | 33 | 109 | 68 | 7 | 61 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 147 | 169 | 15 | 47 | 74 | 73 | 10 | 13 | 44 | 49 | 80 | 14 | 12 | 39 | 128 | 23 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 76 | 65 | 19 | 26 | 39 | 85 | 7 | 10 | 23 | 27 | 6 | 0 | 1 | 5 | 2 | 88 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 744 | 1023 | 1260 | 771 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 457 | 1057 | 740 | 1544 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 237 | 1442 | 1402 | 717 | ||||||||||||
Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​M​a​c​a​c​a​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​u​l​a​t​t​a​"​[​O​r​g​a​n​i​s​m​]​)​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
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If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.
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