Scientific name | Anolis carolinensis |
Common name | Green anole |
Maximum lifespan | 7.20 years (Anolis carolinensis@AnAge) |
Total mtDNA (size: 17223 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 6613 | 10607 | 4210 | 2403 | 5027 | 5580 |
Base content per 1 kb (bases) | 384 | 616 | 244 | 140 | 292 | 324 |
Base content (%) | 38.4% | 61.6% |
Total protein-coding genes (size: 11322 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 4434 | 6888 | 2927 | 1507 | 3373 | 3515 |
Base content per 1 kb (bases) | 392 | 608 | 259 | 133 | 298 | 310 |
Base content (%) | 39.2% | 60.8% |
Total tRNA-coding genes (size: 1520 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 560 | 959 | 324 | 236 | 425 | 534 |
Base content per 1 kb (bases) | 368 | 631 | 213 | 155 | 280 | 351 |
Base content (%) | 36.8% | 63.1% |
Total rRNA-coding genes (size: 2458 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 917 | 1541 | 514 | 403 | 586 | 955 |
Base content per 1 kb (bases) | 373 | 627 | 209 | 164 | 238 | 389 |
Base content (%) | 37.3% | 62.7% |
12S rRNA gene (size: 936 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 355 | 581 | 199 | 156 | 225 | 356 |
Base content per 1 kb (bases) | 379 | 621 | 213 | 167 | 240 | 380 |
Base content (%) | 37.9% | 62.1% |
16S rRNA gene (size: 1522 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 562 | 960 | 315 | 247 | 361 | 599 |
Base content per 1 kb (bases) | 369 | 631 | 207 | 162 | 237 | 394 |
Base content (%) | 36.9% | 63.1% |
ATP6 (size: 684 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 246 | 438 | 170 | 76 | 227 | 211 |
Base content per 1 kb (bases) | 360 | 640 | 249 | 111 | 332 | 308 |
Base content (%) | 36.0% | 64.0% |
ATP8 (size: 168 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 65 | 103 | 51 | 14 | 44 | 59 |
Base content per 1 kb (bases) | 387 | 613 | 304 | 83 | 262 | 351 |
Base content (%) | 38.7% | 61.3% |
COX1 (size: 1545 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 647 | 898 | 358 | 289 | 499 | 399 |
Base content per 1 kb (bases) | 419 | 581 | 232 | 187 | 323 | 258 |
Base content (%) | 41.9% | 58.1% |
COX2 (size: 688 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 272 | 416 | 181 | 91 | 182 | 234 |
Base content per 1 kb (bases) | 395 | 605 | 263 | 132 | 265 | 340 |
Base content (%) | 39.5% | 60.5% |
COX3 (size: 784 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 337 | 447 | 197 | 140 | 230 | 217 |
Base content per 1 kb (bases) | 430 | 570 | 251 | 179 | 293 | 277 |
Base content (%) | 43.0% | 57.0% |
CYTB (size: 1140 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 433 | 707 | 281 | 152 | 374 | 333 |
Base content per 1 kb (bases) | 380 | 620 | 246 | 133 | 328 | 292 |
Base content (%) | 38.0% | 62.0% |
ND1 (size: 961 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 375 | 586 | 252 | 123 | 297 | 289 |
Base content per 1 kb (bases) | 390 | 610 | 262 | 128 | 309 | 301 |
Base content (%) | 39.0% | 61.0% |
ND2 (size: 1036 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 380 | 656 | 278 | 102 | 311 | 345 |
Base content per 1 kb (bases) | 367 | 633 | 268 | 98 | 300 | 333 |
Base content (%) | 36.7% | 63.3% |
ND3 (size: 346 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 139 | 207 | 84 | 55 | 113 | 94 |
Base content per 1 kb (bases) | 402 | 598 | 243 | 159 | 327 | 272 |
Base content (%) | 40.2% | 59.8% |
ND4 (size: 1365 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 549 | 816 | 388 | 161 | 401 | 415 |
Base content per 1 kb (bases) | 402 | 598 | 284 | 118 | 294 | 304 |
Base content (%) | 40.2% | 59.8% |
ND4L (size: 297 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 121 | 176 | 84 | 37 | 91 | 85 |
Base content per 1 kb (bases) | 407 | 593 | 283 | 125 | 306 | 286 |
Base content (%) | 40.7% | 59.3% |
ND5 (size: 1806 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 652 | 1154 | 443 | 209 | 546 | 608 |
Base content per 1 kb (bases) | 361 | 639 | 245 | 116 | 302 | 337 |
Base content (%) | 36.1% | 63.9% |
ND6 (size: 525 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 223 | 302 | 163 | 60 | 65 | 237 |
Base content per 1 kb (bases) | 425 | 575 | 310 | 114 | 124 | 451 |
Base content (%) | 42.5% | 57.5% |
ATP6 (size: 684 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
20 | 2 | 11 | 20 | 1 | 21 | 4 | 5 | 7 | 0 | 4 | 3 | 5 | 1 | 12 | 0 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
4 | 0 | 0 | 2 | 5 | 7 | 0 | 0 | 5 | 4 | 0 | 3 | 2 | 8 | 1 | 3 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
6 | 14 | 0 | 2 | 1 | 6 | 0 | 1 | 3 | 0 | 3 | 1 | 2 | 8 | 1 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
2 | 5 | 0 | 1 | 0 | 3 | 0 | 0 | 1 | 4 | 0 | 0 | 0 | 1 | 0 | 2 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
42 | 75 | 76 | 35 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
21 | 60 | 32 | 115 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
13 | 35 | 103 | 77 |
ATP8 (size: 168 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MPQLNPSPWLMIFFLIWLFLTLVLFNKALKPMFPNTTETKEMTKPAPQPWNWPWY* | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
0 | 2 | 2 | 4 | 0 | 3 | 0 | 1 | 1 | 1 | 1 | 0 | 0 | 0 | 2 | 3 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 4 | 4 | 0 | 1 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
0 | 4 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 3 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
0 | 2 | 0 | 0 | 0 | 3 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 5 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
5 | 18 | 19 | 14 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
5 | 17 | 14 | 20 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
4 | 16 | 26 | 10 |
COX1 (size: 1545 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
28 | 8 | 20 | 20 | 3 | 17 | 3 | 17 | 5 | 4 | 16 | 4 | 10 | 8 | 36 | 6 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
9 | 1 | 2 | 7 | 21 | 16 | 2 | 5 | 14 | 18 | 10 | 6 | 3 | 14 | 4 | 5 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
9 | 17 | 1 | 7 | 8 | 13 | 0 | 1 | 5 | 12 | 6 | 3 | 2 | 6 | 9 | 6 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
12 | 7 | 3 | 6 | 9 | 7 | 1 | 3 | 1 | 3 | 1 | 1 | 0 | 0 | 0 | 14 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
156 | 105 | 127 | 127 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
82 | 133 | 93 | 207 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
51 | 120 | 179 | 165 |
COX2 (size: 688 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
13 | 9 | 14 | 6 | 2 | 11 | 3 | 6 | 7 | 1 | 3 | 1 | 4 | 2 | 8 | 0 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
1 | 0 | 2 | 3 | 8 | 3 | 0 | 1 | 0 | 5 | 2 | 1 | 3 | 9 | 0 | 5 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
7 | 10 | 1 | 1 | 4 | 7 | 0 | 1 | 2 | 5 | 3 | 0 | 0 | 1 | 7 | 3 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
7 | 10 | 2 | 6 | 6 | 3 | 0 | 0 | 0 | 5 | 0 | 0 | 0 | 0 | 0 | 5 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
56 | 58 | 74 | 41 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
23 | 62 | 61 | 83 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
12 | 61 | 99 | 57 |
COX3 (size: 784 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
12 | 3 | 7 | 7 | 1 | 9 | 5 | 6 | 7 | 0 | 4 | 7 | 8 | 1 | 19 | 7 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
1 | 0 | 2 | 4 | 5 | 14 | 0 | 1 | 8 | 5 | 5 | 4 | 1 | 7 | 0 | 3 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
6 | 12 | 0 | 0 | 1 | 7 | 1 | 2 | 3 | 5 | 6 | 0 | 1 | 2 | 2 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
14 | 6 | 4 | 0 | 5 | 1 | 2 | 0 | 0 | 5 | 0 | 0 | 0 | 0 | 0 | 12 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
77 | 61 | 56 | 67 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
43 | 65 | 55 | 98 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
20 | 71 | 106 | 64 |
CYTB (size: 1140 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
28 | 13 | 16 | 16 | 7 | 12 | 3 | 13 | 7 | 1 | 7 | 5 | 6 | 2 | 22 | 8 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 1 | 1 | 1 | 12 | 10 | 0 | 3 | 9 | 11 | 3 | 3 | 6 | 12 | 1 | 2 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
5 | 13 | 2 | 7 | 6 | 10 | 0 | 1 | 1 | 7 | 7 | 0 | 3 | 6 | 12 | 7 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
5 | 6 | 1 | 2 | 5 | 9 | 1 | 0 | 1 | 7 | 0 | 0 | 0 | 1 | 0 | 12 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
83 | 88 | 111 | 98 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
50 | 90 | 77 | 163 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
19 | 103 | 145 | 113 |
ND1 (size: 961 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
21 | 3 | 13 | 14 | 7 | 24 | 6 | 11 | 10 | 1 | 4 | 5 | 7 | 0 | 16 | 4 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 0 | 2 | 3 | 10 | 13 | 0 | 4 | 4 | 5 | 1 | 1 | 3 | 16 | 2 | 2 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
11 | 10 | 0 | 7 | 2 | 11 | 0 | 0 | 3 | 8 | 3 | 3 | 0 | 4 | 7 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
2 | 8 | 2 | 3 | 1 | 7 | 1 | 0 | 0 | 8 | 0 | 0 | 0 | 0 | 0 | 5 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
70 | 94 | 84 | 72 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
35 | 91 | 57 | 137 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
18 | 67 | 148 | 87 |
ND2 (size: 1036 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
32 | 7 | 21 | 10 | 5 | 24 | 2 | 16 | 5 | 4 | 3 | 0 | 1 | 1 | 10 | 4 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
3 | 0 | 0 | 2 | 10 | 9 | 0 | 2 | 6 | 3 | 3 | 3 | 2 | 12 | 0 | 6 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
16 | 25 | 2 | 5 | 12 | 14 | 0 | 0 | 5 | 5 | 4 | 2 | 2 | 6 | 6 | 2 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
4 | 4 | 1 | 0 | 2 | 9 | 0 | 0 | 0 | 3 | 1 | 0 | 0 | 0 | 0 | 9 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
47 | 77 | 138 | 83 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
34 | 118 | 52 | 141 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
21 | 83 | 155 | 86 |
ND3 (size: 1036 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
32 | 7 | 21 | 10 | 5 | 24 | 2 | 16 | 5 | 4 | 3 | 0 | 1 | 1 | 10 | 4 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
3 | 0 | 0 | 2 | 10 | 9 | 0 | 2 | 6 | 3 | 3 | 3 | 2 | 12 | 0 | 6 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
16 | 25 | 2 | 5 | 12 | 14 | 0 | 0 | 5 | 5 | 4 | 2 | 2 | 6 | 6 | 2 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
4 | 4 | 1 | 0 | 2 | 9 | 0 | 0 | 0 | 3 | 1 | 0 | 0 | 0 | 0 | 9 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
47 | 77 | 138 | 83 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
34 | 118 | 52 | 141 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
21 | 83 | 155 | 86 |
ND4 (size: 1365 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
30 | 12 | 22 | 17 | 7 | 27 | 8 | 30 | 9 | 4 | 6 | 1 | 5 | 1 | 12 | 8 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
6 | 1 | 4 | 6 | 11 | 12 | 2 | 1 | 5 | 7 | 2 | 1 | 11 | 12 | 1 | 7 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
20 | 19 | 2 | 7 | 10 | 6 | 1 | 0 | 9 | 3 | 9 | 3 | 4 | 6 | 16 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
11 | 4 | 4 | 0 | 3 | 8 | 1 | 1 | 2 | 8 | 1 | 0 | 0 | 1 | 0 | 7 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
70 | 121 | 158 | 106 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
51 | 128 | 80 | 196 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
40 | 139 | 177 | 99 |
ND4L (size: 297 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
5 | 0 | 3 | 7 | 0 | 7 | 2 | 5 | 3 | 0 | 1 | 0 | 1 | 0 | 3 | 1 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 2 | 1 | 1 | 4 | 3 | 2 | 3 | 1 | 1 | 0 | 1 | 0 | 1 | 0 | 2 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
6 | 6 | 0 | 1 | 2 | 6 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 2 | 2 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
3 | 2 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
20 | 27 | 29 | 23 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
11 | 35 | 16 | 37 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
6 | 22 | 40 | 31 |
ND5 (size: 1806 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
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Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
47 | 9 | 42 | 14 | 10 | 34 | 9 | 26 | 15 | 2 | 4 | 1 | 8 | 0 | 24 | 15 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
5 | 1 | 4 | 5 | 17 | 21 | 0 | 7 | 10 | 6 | 3 | 4 | 7 | 13 | 2 | 9 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
18 | 28 | 2 | 9 | 8 | 19 | 2 | 8 | 9 | 6 | 4 | 1 | 4 | 13 | 20 | 3 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
10 | 5 | 4 | 6 | 5 | 20 | 4 | 0 | 0 | 8 | 1 | 0 | 0 | 1 | 0 | 10 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
102 | 132 | 234 | 134 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
68 | 164 | 118 | 252 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
39 | 147 | 256 | 160 |
ND6 (size: 525 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
7 | 1 | 2 | 2 | 0 | 2 | 0 | 8 | 0 | 0 | 14 | 1 | 3 | 7 | 20 | 0 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 3 | 1 | 8 | 1 | 1 | 3 | 7 | 8 | 1 | 12 | 1 | 0 | 2 | 1 | 1 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
0 | 4 | 0 | 10 | 0 | 0 | 2 | 1 | 0 | 7 | 1 | 2 | 12 | 3 | 0 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
0 | 0 | 5 | 3 | 1 | 0 | 0 | 3 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
75 | 12 | 22 | 66 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
40 | 34 | 20 | 81 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
48 | 14 | 23 | 90 |
Total protein-coding genes (size: 11345 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
253 | 70 | 174 | 143 | 44 | 202 | 47 | 150 | 79 | 18 | 68 | 29 | 58 | 25 | 190 | 57 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
41 | 9 | 20 | 43 | 109 | 110 | 10 | 35 | 73 | 68 | 41 | 29 | 43 | 116 | 12 | 47 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
105 | 167 | 10 | 56 | 57 | 102 | 10 | 15 | 42 | 60 | 48 | 16 | 32 | 59 | 88 | 25 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
70 | 63 | 28 | 27 | 41 | 71 | 11 | 8 | 5 | 54 | 5 | 1 | 1 | 6 | 0 | 84 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
828 | 900 | 1155 | 897 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
477 | 1026 | 694 | 1583 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
307 | 901 | 1505 | 1067 |