Scientific name | Carduelis pinus |
Common name | Pine siskin |
Maximum lifespan | 11.00 years (Carduelis pinus@AnAge) |
Total mtDNA (size: 16812 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 7596 | 9215 | 5265 | 2331 | 4012 | 5203 |
Base content per 1 kb (bases) | 452 | 548 | 313 | 139 | 239 | 309 |
Base content (%) | 45.2% | 54.8% |
Total protein-coding genes (size: 11378 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 5237 | 6140 | 3856 | 1381 | 2694 | 3446 |
Base content per 1 kb (bases) | 460 | 540 | 339 | 121 | 237 | 303 |
Base content (%) | 46.0% | 54.0% |
Total tRNA-coding genes (size: 1541 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 635 | 906 | 372 | 263 | 392 | 514 |
Base content per 1 kb (bases) | 412 | 588 | 241 | 171 | 254 | 334 |
Base content (%) | 41.2% | 58.8% |
Total rRNA-coding genes (size: 2571 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 1158 | 1413 | 640 | 518 | 560 | 853 |
Base content per 1 kb (bases) | 450 | 550 | 249 | 201 | 218 | 332 |
Base content (%) | 45.0% | 55.0% |
12S rRNA gene (size: 974 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 464 | 510 | 262 | 202 | 208 | 302 |
Base content per 1 kb (bases) | 476 | 524 | 269 | 207 | 214 | 310 |
Base content (%) | 47.6% | 52.4% |
16S rRNA gene (size: 1597 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 694 | 903 | 378 | 316 | 352 | 551 |
Base content per 1 kb (bases) | 435 | 565 | 237 | 198 | 220 | 345 |
Base content (%) | 43.5% | 56.5% |
ATP6 (size: 684 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 309 | 375 | 242 | 67 | 169 | 206 |
Base content per 1 kb (bases) | 452 | 548 | 354 | 98 | 247 | 301 |
Base content (%) | 45.2% | 54.8% |
ATP8 (size: 168 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 72 | 96 | 60 | 12 | 45 | 51 |
Base content per 1 kb (bases) | 429 | 571 | 357 | 71 | 268 | 304 |
Base content (%) | 42.9% | 57.1% |
COX1 (size: 1551 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 718 | 832 | 475 | 243 | 391 | 441 |
Base content per 1 kb (bases) | 463 | 536 | 306 | 157 | 252 | 284 |
Base content (%) | 46.3% | 53.6% |
COX2 (size: 684 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 311 | 373 | 213 | 98 | 158 | 215 |
Base content per 1 kb (bases) | 455 | 545 | 311 | 143 | 231 | 314 |
Base content (%) | 45.5% | 54.5% |
COX3 (size: 784 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 378 | 406 | 261 | 117 | 182 | 224 |
Base content per 1 kb (bases) | 482 | 518 | 333 | 149 | 232 | 286 |
Base content (%) | 48.2% | 51.8% |
CYTB (size: 1143 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 533 | 610 | 386 | 147 | 281 | 329 |
Base content per 1 kb (bases) | 466 | 534 | 338 | 129 | 246 | 288 |
Base content (%) | 46.6% | 53.4% |
ND1 (size: 978 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 436 | 542 | 311 | 125 | 259 | 283 |
Base content per 1 kb (bases) | 446 | 554 | 318 | 128 | 265 | 289 |
Base content (%) | 44.6% | 55.4% |
ND2 (size: 1040 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 456 | 584 | 355 | 101 | 259 | 325 |
Base content per 1 kb (bases) | 438 | 562 | 341 | 97 | 249 | 313 |
Base content (%) | 43.8% | 56.2% |
ND3 (size: 351 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 163 | 188 | 118 | 45 | 91 | 97 |
Base content per 1 kb (bases) | 464 | 536 | 336 | 128 | 259 | 276 |
Base content (%) | 46.4% | 53.6% |
ND4 (size: 1378 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 633 | 745 | 490 | 143 | 318 | 427 |
Base content per 1 kb (bases) | 459 | 541 | 356 | 104 | 231 | 310 |
Base content (%) | 45.9% | 54.1% |
ND4L (size: 297 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 145 | 152 | 111 | 34 | 70 | 82 |
Base content per 1 kb (bases) | 488 | 512 | 374 | 114 | 236 | 276 |
Base content (%) | 48.8% | 51.2% |
ND5 (size: 1818 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 836 | 982 | 628 | 208 | 420 | 562 |
Base content per 1 kb (bases) | 460 | 540 | 345 | 114 | 231 | 309 |
Base content (%) | 46.0% | 54.0% |
ND6 (size: 519 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 252 | 267 | 209 | 43 | 55 | 212 |
Base content per 1 kb (bases) | 486 | 514 | 403 | 83 | 106 | 408 |
Base content (%) | 48.6% | 51.4% |
ATP6 (size: 684 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
4 | 14 | 7 | 5 | 13 | 33 | 4 | 6 | 7 | 1 | 1 | 2 | 5 | 1 | 1 | 10 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
1 | 0 | 0 | 2 | 10 | 3 | 0 | 2 | 4 | 2 | 0 | 2 | 4 | 9 | 0 | 5 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
8 | 12 | 0 | 2 | 4 | 5 | 0 | 1 | 2 | 1 | 2 | 0 | 0 | 0 | 9 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
3 | 4 | 0 | 0 | 3 | 4 | 0 | 0 | 2 | 2 | 1 | 0 | 0 | 1 | 0 | 4 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
39 | 86 | 67 | 36 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
20 | 66 | 35 | 107 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
8 | 90 | 104 | 26 |
ATP8 (size: 168 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MPQLNPAPWFFIMIISWLTFSLIIQPKILTFVTMNPPSNKPPIAPSTTPWTWPWT* | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
3 | 4 | 1 | 1 | 2 | 1 | 0 | 0 | 1 | 1 | 0 | 0 | 1 | 0 | 3 | 1 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 3 | 4 | 4 | 0 | 1 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
4 | 2 | 0 | 0 | 2 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 2 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
0 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 5 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
3 | 17 | 23 | 13 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
6 | 23 | 8 | 19 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
3 | 20 | 20 | 13 |
COX1 (size: 1551 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
13 | 28 | 20 | 6 | 14 | 39 | 0 | 4 | 9 | 0 | 9 | 10 | 18 | 3 | 5 | 38 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 0 | 1 | 9 | 17 | 19 | 0 | 11 | 8 | 26 | 1 | 4 | 11 | 15 | 0 | 5 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
15 | 16 | 1 | 4 | 9 | 11 | 0 | 0 | 4 | 4 | 13 | 0 | 0 | 1 | 14 | 2 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
17 | 10 | 0 | 2 | 13 | 9 | 0 | 1 | 2 | 5 | 0 | 0 | 1 | 0 | 0 | 17 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
156 | 125 | 129 | 106 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
77 | 136 | 94 | 209 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
8 | 214 | 218 | 76 |
COX2 (size: 684 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
4 | 10 | 10 | 1 | 9 | 15 | 1 | 3 | 6 | 0 | 3 | 4 | 10 | 0 | 1 | 8 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 0 | 3 | 4 | 7 | 5 | 0 | 1 | 2 | 5 | 0 | 3 | 4 | 6 | 0 | 5 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
2 | 8 | 1 | 5 | 5 | 6 | 0 | 0 | 5 | 0 | 7 | 0 | 0 | 1 | 6 | 2 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
7 | 12 | 0 | 2 | 11 | 4 | 0 | 1 | 2 | 2 | 1 | 0 | 0 | 1 | 0 | 5 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
66 | 60 | 58 | 44 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
27 | 61 | 59 | 81 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
5 | 92 | 98 | 33 |
COX3 (size: 784 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
2 | 14 | 6 | 1 | 5 | 24 | 1 | 2 | 7 | 1 | 4 | 2 | 8 | 0 | 3 | 20 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
1 | 0 | 1 | 1 | 17 | 7 | 0 | 1 | 6 | 12 | 0 | 4 | 2 | 7 | 1 | 3 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
7 | 11 | 0 | 4 | 4 | 4 | 0 | 0 | 6 | 3 | 7 | 0 | 0 | 0 | 3 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
16 | 8 | 0 | 1 | 3 | 3 | 0 | 0 | 1 | 4 | 0 | 0 | 0 | 0 | 0 | 12 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
70 | 75 | 56 | 60 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
43 | 72 | 53 | 93 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
4 | 114 | 115 | 28 |
CYTB (size: 1143 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
10 | 24 | 5 | 5 | 15 | 38 | 2 | 2 | 7 | 1 | 5 | 7 | 12 | 0 | 4 | 24 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 0 | 4 | 4 | 16 | 8 | 0 | 5 | 7 | 11 | 1 | 4 | 7 | 12 | 1 | 1 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
10 | 15 | 0 | 4 | 7 | 9 | 1 | 0 | 1 | 1 | 11 | 0 | 0 | 1 | 20 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
12 | 7 | 0 | 1 | 7 | 10 | 0 | 2 | 3 | 3 | 0 | 0 | 0 | 1 | 0 | 11 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
91 | 112 | 99 | 79 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
48 | 99 | 79 | 155 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
8 | 175 | 151 | 47 |
ND1 (size: 978 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
11 | 13 | 8 | 6 | 16 | 35 | 2 | 7 | 6 | 0 | 2 | 2 | 11 | 0 | 3 | 14 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
3 | 0 | 3 | 8 | 6 | 17 | 0 | 2 | 5 | 5 | 2 | 0 | 13 | 12 | 0 | 3 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
10 | 6 | 0 | 6 | 6 | 6 | 1 | 0 | 6 | 7 | 9 | 0 | 0 | 2 | 11 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
1 | 9 | 2 | 3 | 1 | 7 | 0 | 2 | 1 | 5 | 0 | 1 | 0 | 0 | 0 | 8 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
75 | 100 | 81 | 70 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
40 | 94 | 59 | 133 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
10 | 117 | 143 | 56 |
ND2 (size: 1040 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
11 | 25 | 12 | 5 | 19 | 34 | 6 | 2 | 9 | 1 | 0 | 6 | 3 | 1 | 3 | 9 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
4 | 2 | 0 | 3 | 9 | 11 | 0 | 2 | 4 | 7 | 0 | 7 | 5 | 8 | 0 | 10 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
19 | 14 | 1 | 5 | 11 | 12 | 0 | 1 | 4 | 2 | 5 | 1 | 0 | 3 | 8 | 3 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
6 | 4 | 1 | 0 | 1 | 14 | 0 | 0 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 9 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
52 | 107 | 126 | 61 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
34 | 115 | 57 | 140 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
15 | 133 | 141 | 57 |
ND3 (size: 1040 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
11 | 25 | 12 | 5 | 19 | 34 | 6 | 2 | 9 | 1 | 0 | 6 | 3 | 1 | 3 | 9 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
4 | 2 | 0 | 3 | 9 | 11 | 0 | 2 | 4 | 7 | 0 | 7 | 5 | 8 | 0 | 10 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
19 | 14 | 1 | 5 | 11 | 12 | 0 | 1 | 4 | 2 | 5 | 1 | 0 | 3 | 8 | 3 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
6 | 4 | 1 | 0 | 1 | 14 | 0 | 0 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 9 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
52 | 107 | 126 | 61 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
34 | 115 | 57 | 140 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
15 | 133 | 141 | 57 |
ND4 (size: 1378 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
8 | 39 | 25 | 11 | 31 | 43 | 4 | 9 | 14 | 0 | 2 | 3 | 4 | 0 | 2 | 10 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
1 | 0 | 3 | 8 | 18 | 16 | 1 | 2 | 6 | 8 | 1 | 3 | 12 | 12 | 0 | 3 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
18 | 17 | 0 | 3 | 11 | 13 | 0 | 0 | 10 | 1 | 12 | 0 | 0 | 3 | 13 | 2 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
12 | 9 | 1 | 1 | 1 | 9 | 1 | 0 | 1 | 10 | 0 | 0 | 0 | 0 | 0 | 12 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
81 | 155 | 147 | 76 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
53 | 135 | 79 | 192 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
9 | 200 | 201 | 49 |
ND4L (size: 297 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
0 | 5 | 6 | 1 | 5 | 12 | 1 | 0 | 3 | 0 | 0 | 1 | 1 | 0 | 1 | 4 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
1 | 0 | 3 | 2 | 5 | 2 | 0 | 1 | 2 | 1 | 0 | 1 | 0 | 2 | 0 | 1 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
5 | 2 | 0 | 1 | 5 | 3 | 0 | 0 | 4 | 1 | 2 | 0 | 0 | 0 | 2 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
5 | 2 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 1 | 0 | 1 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
18 | 33 | 26 | 22 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
14 | 29 | 18 | 38 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
2 | 49 | 38 | 10 |
ND5 (size: 1818 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
12 | 40 | 29 | 7 | 27 | 60 | 4 | 7 | 13 | 3 | 5 | 5 | 7 | 1 | 5 | 30 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 1 | 5 | 8 | 26 | 16 | 0 | 0 | 12 | 18 | 3 | 11 | 14 | 6 | 0 | 10 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
33 | 23 | 0 | 4 | 16 | 18 | 1 | 0 | 11 | 0 | 12 | 0 | 0 | 4 | 22 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
13 | 12 | 0 | 1 | 8 | 19 | 1 | 0 | 2 | 6 | 0 | 1 | 0 | 0 | 0 | 12 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
122 | 166 | 207 | 111 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
71 | 186 | 108 | 241 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
15 | 276 | 247 | 68 |
ND6 (size: 519 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
2 | 0 | 1 | 5 | 0 | 0 | 0 | 11 | 0 | 0 | 15 | 0 | 3 | 15 | 7 | 1 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
6 | 2 | 0 | 5 | 0 | 1 | 6 | 11 | 0 | 1 | 18 | 1 | 0 | 1 | 2 | 1 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
0 | 0 | 1 | 6 | 0 | 0 | 4 | 4 | 0 | 7 | 0 | 3 | 17 | 1 | 1 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
0 | 1 | 5 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 4 | 0 | 0 | 0 | 1 | 1 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
83 | 13 | 17 | 60 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
44 | 28 | 18 | 83 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
82 | 2 | 20 | 69 |
Total protein-coding genes (size: 11395 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
81 | 223 | 135 | 56 | 163 | 346 | 31 | 55 | 85 | 8 | 46 | 42 | 84 | 21 | 40 | 176 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
27 | 5 | 24 | 56 | 135 | 108 | 7 | 38 | 58 | 98 | 27 | 44 | 79 | 97 | 4 | 48 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
139 | 127 | 4 | 46 | 82 | 91 | 7 | 7 | 54 | 27 | 82 | 4 | 18 | 17 | 114 | 12 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
92 | 85 | 9 | 13 | 52 | 82 | 2 | 6 | 16 | 43 | 6 | 2 | 1 | 6 | 1 | 102 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
879 | 1088 | 1063 | 766 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
491 | 1074 | 687 | 1544 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
177 | 1531 | 1546 | 542 |
Failed to understand id: ?term=("Carduelis pinus"[Organism]) AND (refseq[filter] AND mitochondrion[filter])