Stats for family Scombridae

Species in family:
Auxis thazard
Euthynnus affinis
Katsuwonus pelamis
Scomber japonicus
Scomber scombrus
Thunnus alalunga
Thunnus albacares
Thunnus maccoyii
Thunnus obesus
Thunnus thynnus
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Stats for total mtDNA (group size: 10 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 46.0 - 47.2% 52.8 - 53.9% 4848 - 5002 2742 - 2855 4055 - 4225 4557 - 4716 5.0 - 20.0
Median 46.9% 53.4% 4918 2762 4197 4693 13.0
Average ± stdev 46.6 ± 0.5% 53.4 ± 0.4% 4907 ± 51 2789 ± 43 4167 ± 56 4652 ± 56 13.0 ± 4.3
Coefficient of variation 0.01 0.01 0.01 0.02 0.01 0.01 0.33
Pearson correlation
coefficient with log10MLS		 -0.36 0.26 -0.30 -0.16 0.47 -0.03 -
Pearson p-value
(two tailed)		 3.12E-01 4.65E-01 3.93E-01 6.56E-01 1.68E-01 9.25E-01 -
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Stats for total protein-coding genes (group size: 10 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 46.5 - 48.2% 51.8 - 53.4% 3565 - 3714 1729 - 1829 2861 - 3011 2935 - 3107 5.0 - 20.0
Median 47.7% 53.0% 3631 1742 2992 3086 13.0
Average ± stdev 47.3 ± 0.7% 52.7 ± 0.7% 3623 ± 50 1770 ± 39 2962 ± 51 3046 ± 60 13.0 ± 4.3
Coefficient of variation 0.02 0.01 0.01 0.02 0.02 0.02 0.33
Pearson correlation
coefficient with log10MLS		 -0.33 0.29 -0.35 -0.17 0.49 -0.06 -
Pearson p-value
(two tailed)		 3.48E-01 4.21E-01 3.15E-01 6.29E-01 1.52E-01 8.66E-01 -
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Stats for D-loop (group size: 10 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 36.9 - 38.9% 59.3 - 63.0% 183 - 197 129 - 141 245 - 269 266 - 291 5.0 - 20.0
Median 37.9% 62.1% 193 132 253 278 13.0
Average ± stdev 37.8 ± 0.6% 61.7 ± 1.1% 191 ± 4 133 ± 3 254 ± 7 276 ± 8 13.0 ± 4.3
Coefficient of variation 0.02 0.02 0.02 0.03 0.03 0.03 0.33
Pearson correlation
coefficient with log10MLS		 -0.49 -0.17 0.12 -0.32 0.11 0.09 -
Pearson p-value
(two tailed)		 1.55E-01 6.47E-01 7.33E-01 3.68E-01 7.52E-01 7.98E-01 -
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Stats for total tRNA-coding genes (group size: 10 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 45.5 - 46.2% 53.8 - 54.5% 386 - 393 315 - 325 376 - 383 458 - 464 5.0 - 20.0
Median 45.6% 54.4% 390 319 382 462 13.0
Average ± stdev 45.7 ± 0.2% 54.3 ± 0.2% 389 ± 2 318 ± 2 380 ± 2 461 ± 1 13.0 ± 4.3
Coefficient of variation 0.00 0.00 0.01 0.01 0.01 0.00 0.33
Pearson correlation
coefficient with log10MLS		 0.44 -0.49 -0.05 0.63 -0.08 -0.55 -
Pearson p-value
(two tailed)		 2.05E-01 1.49E-01 8.83E-01 5.33E-02 8.22E-01 9.61E-02 -
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Stats for total rRNA-coding genes (group size: 10 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 46.6 - 47.3% 52.6 - 53.4% 679 - 1006 555 - 716 551 - 813 841 - 1109 5.0 - 20.0
Median 47.0% 53.0% 689 560 560 856 13.0
Average ± stdev 47.0 ± 0.2% 53.0 ± 0.2% 780 ± 145 605 ± 72 633 ± 116 925 ± 118 13.0 ± 4.3
Coefficient of variation 0.00 0.00 0.19 0.12 0.18 0.13 0.33
Pearson correlation
coefficient with log10MLS		 -0.26 0.09 0.07 0.05 0.06 0.08 -
Pearson p-value
(two tailed)		 4.66E-01 8.09E-01 8.50E-01 9.01E-01 8.65E-01 8.22E-01 -
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Stats for ATP6 (group size: 10 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 43.4 - 47.4% 52.6 - 56.1% 207 - 227 86 - 97 182 - 202 172 - 189 5.0 - 20.0
Median 45.3% 55.0% 221 89 190 186 13.0
Average ± stdev 45.0 ± 1.3% 54.7 ± 1.0% 218 ± 6 89 ± 3 190 ± 6 183 ± 5 13.0 ± 4.3
Coefficient of variation 0.03 0.02 0.03 0.04 0.03 0.03 0.33
Pearson correlation
coefficient with log10MLS		 -0.60 0.59 -0.38 -0.73 0.42 0.26 -
Pearson p-value
(two tailed)		 6.49E-02 7.16E-02 2.82E-01 1.56E-02 2.22E-01 4.75E-01 -
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Stats for ATP8 (group size: 10 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 45.2 - 48.8% 51.2 - 54.8% 55 - 60 20 - 24 36 - 41 50 - 56 5.0 - 20.0
Median 45.2% 54.8% 56 21 36 56 13.0
Average ± stdev 46.2 ± 1.4% 53.8 ± 1.4% 56 ± 1 20 ± 1 36 ± 1 53 ± 2 13.0 ± 4.3
Coefficient of variation 0.03 0.03 0.03 0.06 0.04 0.05 0.33
Pearson correlation
coefficient with log10MLS		 -0.21 0.21 -0.48 0.24 -0.05 0.22 -
Pearson p-value
(two tailed)		 5.62E-01 5.62E-01 1.61E-01 5.01E-01 8.94E-01 5.39E-01 -
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Stats for COX1 (group size: 10 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 45.5 - 48.7% 51.3 - 54.2% 421 - 452 285 - 308 430 - 447 370 - 397 5.0 - 20.0
Median 46.2% 53.8% 430 289 443 393 13.0
Average ± stdev 46.5 ± 1.0% 53.4 ± 0.9% 430 ± 9 291 ± 7 440 ± 4 388 ± 9 13.0 ± 4.3
Coefficient of variation 0.02 0.02 0.02 0.03 0.01 0.02 0.33
Pearson correlation
coefficient with log10MLS		 0.06 -0.19 0.12 0.08 -0.06 -0.16 -
Pearson p-value
(two tailed)		 8.75E-01 5.97E-01 7.49E-01 8.34E-01 8.62E-01 6.63E-01 -
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Stats for COX2 (group size: 10 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 44.1 - 47.5% 52.5 - 55.9% 192 - 207 111 - 121 176 - 189 187 - 199 5.0 - 20.0
Median 44.6% 55.4% 195 114 186 196 13.0
Average ± stdev 45.1 ± 1.0% 54.9 ± 1.0% 197 ± 5 114 ± 2 184 ± 4 195 ± 4 13.0 ± 4.3
Coefficient of variation 0.02 0.02 0.03 0.02 0.02 0.02 0.33
Pearson correlation
coefficient with log10MLS		 0.44 -0.48 0.41 0.35 -0.22 -0.58 -
Pearson p-value
(two tailed)		 2.08E-01 1.61E-01 2.45E-01 3.19E-01 5.39E-01 7.87E-02 -
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Stats for COX3 (group size: 10 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 46.2 - 48.5% 51.5 - 53.8% 235 - 246 126 - 138 201 - 210 199 - 213 5.0 - 20.0
Median 47.6% 53.1% 239 131 207 209 13.0
Average ± stdev 47.3 ± 0.9% 52.7 ± 0.9% 239 ± 3 131 ± 4 206 ± 3 207 ± 4 13.0 ± 4.3
Coefficient of variation 0.02 0.02 0.02 0.03 0.01 0.02 0.33
Pearson correlation
coefficient with log10MLS		 -0.34 0.29 -0.37 -0.19 0.13 0.33 -
Pearson p-value
(two tailed)		 3.42E-01 4.13E-01 2.86E-01 5.99E-01 7.28E-01 3.51E-01 -
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Stats for CYTB (group size: 10 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 45.8 - 48.6% 51.4 - 53.7% 352 - 375 170 - 196 306 - 331 267 - 288 5.0 - 20.0
Median 47.5% 53.0% 361 173 325 282 13.0
Average ± stdev 47.2 ± 1.0% 52.6 ± 0.8% 362 ± 8 175 ± 7 319 ± 8 280 ± 5 13.0 ± 4.3
Coefficient of variation 0.02 0.02 0.02 0.04 0.03 0.02 0.33
Pearson correlation
coefficient with log10MLS		 -0.22 0.14 -0.52 0.24 0.52 -0.55 -
Pearson p-value
(two tailed)		 5.34E-01 6.97E-01 1.25E-01 5.05E-01 1.23E-01 9.94E-02 -
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Stats for ND1 (group size: 10 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 47.0 - 50.1% 49.9 - 53.0% 312 - 329 146 - 160 245 - 268 236 - 254 5.0 - 20.0
Median 48.0% 52.0% 321 148 256 250 13.0
Average ± stdev 48.4 ± 1.0% 51.6 ± 0.9% 320 ± 5 150 ± 4 255 ± 6 247 ± 5 13.0 ± 4.3
Coefficient of variation 0.02 0.02 0.02 0.03 0.03 0.02 0.33
Pearson correlation
coefficient with log10MLS		 -0.26 0.22 -0.42 0.02 0.36 -0.10 -
Pearson p-value
(two tailed)		 4.61E-01 5.38E-01 2.21E-01 9.56E-01 3.01E-01 7.88E-01 -
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Stats for ND2 (group size: 10 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 49.3 - 50.6% 49.4 - 50.7% 361 - 378 142 - 162 233 - 256 265 - 294 5.0 - 20.0
Median 50.0% 50.1% 375 148 246 278 13.0
Average ± stdev 49.9 ± 0.3% 50.1 ± 0.3% 373 ± 5 149 ± 5 245 ± 5 278 ± 8 13.0 ± 4.3
Coefficient of variation 0.01 0.01 0.01 0.04 0.02 0.03 0.33
Pearson correlation
coefficient with log10MLS		 0.47 -0.46 0.64 -0.30 0.22 -0.36 -
Pearson p-value
(two tailed)		 1.67E-01 1.84E-01 4.45E-02 3.95E-01 5.37E-01 3.02E-01 -
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Stats for ND3 (group size: 10 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 49.9 - 52.1% 47.9 - 50.1% 120 - 128 53 - 59 86 - 110 65 - 85 5.0 - 20.0
Median 51.3% 48.7% 123 56 94 82 13.0
Average ± stdev 51.3 ± 0.6% 48.7 ± 0.6% 123 ± 2 55 ± 1 93 ± 7 77 ± 6 13.0 ± 4.3
Coefficient of variation 0.01 0.01 0.02 0.03 0.08 0.09 0.33
Pearson correlation
coefficient with log10MLS		 -0.11 0.11 0.46 -0.64 0.20 -0.18 -
Pearson p-value
(two tailed)		 7.55E-01 7.55E-01 1.83E-01 4.70E-02 5.73E-01 6.19E-01 -
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Stats for ND4 (group size: 10 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 46.1 - 49.2% 50.8 - 53.9% 431 - 461 203 - 219 330 - 368 358 - 383 5.0 - 20.0
Median 47.1% 53.0% 442 211 361 375 13.0
Average ± stdev 47.4 ± 1.1% 52.6 ± 1.1% 444 ± 11 210 ± 4 352 ± 12 373 ± 7 13.0 ± 4.3
Coefficient of variation 0.02 0.02 0.03 0.02 0.04 0.02 0.33
Pearson correlation
coefficient with log10MLS		 -0.61 0.64 -0.48 -0.62 0.49 0.38 -
Pearson p-value
(two tailed)		 6.03E-02 4.85E-02 1.57E-01 5.50E-02 1.52E-01 2.82E-01 -
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Stats for ND4L (group size: 10 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 46.8 - 53.9% 46.1 - 53.2% 94 - 110 44 - 50 77 - 89 60 - 69 5.0 - 20.0
Median 50.8% 49.8% 105 45 84 66 13.0
Average ± stdev 50.2 ± 2.3% 49.7 ± 2.2% 103 ± 4 46 ± 2 82 ± 3 64 ± 2 13.0 ± 4.3
Coefficient of variation 0.05 0.04 0.05 0.05 0.05 0.04 0.33
Pearson correlation
coefficient with log10MLS		 -0.37 0.35 -0.34 -0.36 0.20 0.49 -
Pearson p-value
(two tailed)		 2.86E-01 3.27E-01 3.33E-01 3.02E-01 5.85E-01 1.50E-01 -
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Stats for ND5 (group size: 10 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 45.7 - 47.9% 52.1 - 54.3% 583 - 631 249 - 270 432 - 496 487 - 527 5.0 - 20.0
Median 46.5% 53.6% 592 261 474 517 13.0
Average ± stdev 46.5 ± 0.6% 53.4 ± 0.6% 594 ± 13 260 ± 5 471 ± 15 511 ± 12 13.0 ± 4.3
Coefficient of variation 0.01 0.01 0.02 0.02 0.03 0.02 0.33
Pearson correlation
coefficient with log10MLS		 -0.28 0.24 -0.30 0.13 0.35 -0.24 -
Pearson p-value
(two tailed)		 4.32E-01 5.06E-01 4.04E-01 7.16E-01 3.21E-01 5.11E-01 -
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Stats for ND6 (group size: 10 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 44.1 - 48.5% 51.5 - 55.9% 158 - 171 68 - 87 81 - 94 187 - 201 5.0 - 20.0
Median 45.4% 55.2% 163 79 92 195 13.0
Average ± stdev 45.8 ± 1.6% 54.2 ± 1.6% 163 ± 3 75 ± 6 88 ± 5 194 ± 4 13.0 ± 4.3
Coefficient of variation 0.03 0.03 0.02 0.08 0.06 0.02 0.33
Pearson correlation
coefficient with log10MLS		 -0.54 0.54 -0.77 -0.18 0.22 0.74 -
Pearson p-value
(two tailed)		 1.06E-01 1.06E-01 9.45E-03 6.16E-01 5.41E-01 1.45E-02 -
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Stats for 12S rRNA gene (group size: 10 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 47.8 - 49.4% 50.6 - 52.2% 250 - 258 205 - 213 198 - 208 279 - 294 5.0 - 20.0
Median 49.0% 50.9% 254 212 201 283 13.0
Average ± stdev 48.9 ± 0.4% 51.0 ± 0.4% 253 ± 2 211 ± 2 200 ± 2 283 ± 3 13.0 ± 4.3
Coefficient of variation 0.01 0.01 0.01 0.01 0.01 0.01 0.33
Pearson correlation
coefficient with log10MLS		 -0.58 0.48 0.07 -0.52 0.48 0.47 -
Pearson p-value
(two tailed)		 8.05E-02 1.65E-01 8.45E-01 1.22E-01 1.65E-01 1.69E-01 -
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Stats for 16S rRNA gene (group size: 10 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 45.5 - 46.7% 53.2 - 54.5% 425 - 754 343 - 504 351 - 614 559 - 826 5.0 - 20.0
Median 45.9% 54.2% 434 351 359 567 13.0
Average ± stdev 46.0 ± 0.4% 53.9 ± 0.5% 526 ± 147 393 ± 71 433 ± 117 642 ± 118 13.0 ± 4.3
Coefficient of variation 0.01 0.01 0.28 0.18 0.27 0.18 0.33
Pearson correlation
coefficient with log10MLS		 0.17 -0.21 0.07 0.06 0.05 0.07 -
Pearson p-value
(two tailed)		 6.47E-01 5.61E-01 8.54E-01 8.62E-01 8.91E-01 8.57E-01 -
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.