Viewing data for Anser fabalis
| Scientific name | Anser fabalis |
| Common name | Bean goose |
| Maximum lifespan | 25.60 years (Anser fabalis@AnAge) |
| Total mtDNA (size: 16688 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 7877 | 8811 | 5314 | 2563 | 3793 | 5018 |
| Base content per 1 kb (bases) | 472 | 528 | 318 | 154 | 227 | 301 |
| Base content (%) | 47.2% | 52.8% | ||||
| Total protein-coding genes (size: 11345 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 5444 | 5901 | 3864 | 1580 | 2562 | 3339 |
| Base content per 1 kb (bases) | 480 | 520 | 341 | 139 | 226 | 294 |
| Base content (%) | 48.0% | 52.0% | ||||
| D-loop (size: 1182 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 547 | 635 | 368 | 179 | 314 | 321 |
| Base content per 1 kb (bases) | 463 | 537 | 311 | 151 | 266 | 272 |
| Base content (%) | 46.3% | 53.7% | ||||
| Total tRNA-coding genes (size: 1534 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 654 | 880 | 389 | 265 | 373 | 507 |
| Base content per 1 kb (bases) | 426 | 574 | 254 | 173 | 243 | 331 |
| Base content (%) | 42.6% | 57.4% | ||||
| Total rRNA-coding genes (size: 2255 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 1038 | 1217 | 574 | 464 | 468 | 749 |
| Base content per 1 kb (bases) | 460 | 540 | 255 | 206 | 208 | 332 |
| Base content (%) | 46.0% | 54.0% | ||||
| 12S rRNA gene (size: 984 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 481 | 503 | 260 | 221 | 200 | 303 |
| Base content per 1 kb (bases) | 489 | 511 | 264 | 225 | 203 | 308 |
| Base content (%) | 48.9% | 51.1% | ||||
| 16S rRNA gene (size: 1271 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 557 | 714 | 314 | 243 | 268 | 446 |
| Base content per 1 kb (bases) | 438 | 562 | 247 | 191 | 211 | 351 |
| Base content (%) | 43.8% | 56.2% | ||||
| ATP6 (size: 684 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 313 | 371 | 238 | 75 | 159 | 212 |
| Base content per 1 kb (bases) | 458 | 542 | 348 | 110 | 232 | 310 |
| Base content (%) | 45.8% | 54.2% | ||||
| ATP8 (size: 168 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 76 | 92 | 65 | 11 | 34 | 58 |
| Base content per 1 kb (bases) | 452 | 548 | 387 | 65 | 202 | 345 |
| Base content (%) | 45.2% | 54.8% | ||||
| COX1 (size: 1551 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 749 | 802 | 493 | 256 | 379 | 423 |
| Base content per 1 kb (bases) | 483 | 517 | 318 | 165 | 244 | 273 |
| Base content (%) | 48.3% | 51.7% | ||||
| COX2 (size: 687 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 338 | 349 | 229 | 109 | 157 | 192 |
| Base content per 1 kb (bases) | 492 | 508 | 333 | 159 | 229 | 279 |
| Base content (%) | 49.2% | 50.8% | ||||
| COX3 (size: 785 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 390 | 395 | 266 | 124 | 176 | 219 |
| Base content per 1 kb (bases) | 497 | 503 | 339 | 158 | 224 | 279 |
| Base content (%) | 49.7% | 50.3% | ||||
| CYTB (size: 1131 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 554 | 577 | 395 | 159 | 259 | 318 |
| Base content per 1 kb (bases) | 490 | 510 | 349 | 141 | 229 | 281 |
| Base content (%) | 49.0% | 51.0% | ||||
| ND1 (size: 963 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 458 | 505 | 308 | 150 | 245 | 260 |
| Base content per 1 kb (bases) | 476 | 524 | 320 | 156 | 254 | 270 |
| Base content (%) | 47.6% | 52.4% | ||||
| ND2 (size: 1039 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 490 | 549 | 364 | 126 | 232 | 317 |
| Base content per 1 kb (bases) | 472 | 528 | 350 | 121 | 223 | 305 |
| Base content (%) | 47.2% | 52.8% | ||||
| ND3 (size: 351 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 178 | 173 | 121 | 57 | 86 | 87 |
| Base content per 1 kb (bases) | 507 | 493 | 345 | 162 | 245 | 248 |
| Base content (%) | 50.7% | 49.3% | ||||
| ND4 (size: 1379 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 642 | 737 | 476 | 166 | 321 | 416 |
| Base content per 1 kb (bases) | 466 | 534 | 345 | 120 | 233 | 302 |
| Base content (%) | 46.6% | 53.4% | ||||
| ND4L (size: 297 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 146 | 151 | 99 | 47 | 74 | 77 |
| Base content per 1 kb (bases) | 492 | 508 | 333 | 158 | 249 | 259 |
| Base content (%) | 49.2% | 50.8% | ||||
| ND5 (size: 1818 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 853 | 965 | 615 | 238 | 390 | 575 |
| Base content per 1 kb (bases) | 469 | 531 | 338 | 131 | 215 | 316 |
| Base content (%) | 46.9% | 53.1% | ||||
| ND6 (size: 510 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 262 | 248 | 198 | 64 | 54 | 194 |
| Base content per 1 kb (bases) | 514 | 486 | 388 | 125 | 106 | 380 |
| Base content (%) | 51.4% | 48.6% | ||||
| ATP6 (size: 684 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
Amino acid frequencies:
Glycine (Gly, G)
n = 5 (2.2%) 
Alanine (Ala, A)
n = 15 (6.61%) 
Serine (Ser, S)
n = 19 (8.37%) 
Threonine (Thr, T)
n = 23 (10.13%) 
Cysteine (Cys, C)
n = 1 (0.44%) 
Valine (Val, V)
n = 9 (3.96%) 
Leucine (Leu, L)
n = 44 (19.38%) 
Isoleucine (Ile, I)
n = 19 (8.37%) 
Methionine (Met, M)
n = 12 (5.29%) 
Proline (Pro, P)
n = 14 (6.17%) 
Phenylalanine (Phe, F)
n = 10 (4.41%) 
Tyrosine (Tyr, Y)
n = 4 (1.76%) 
Tryptophan (Trp, W)
n = 5 (2.2%) 
Aspartic acid (Asp, D)
n = 2 (0.88%) 
Glutamic acid (Glu, E)
n = 6 (2.64%) 
Asparagine (Asn, N)
n = 14 (6.17%) 
Glutamine (Gln, Q)
n = 9 (3.96%) 
Histidine (His, H)
n = 4 (1.76%) 
Lysine (Lys, K)
n = 4 (1.76%) 
Arginine (Arg, R)
n = 8 (3.52%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 1 | 18 | 10 | 7 | 9 | 22 | 1 | 5 | 6 | 3 | 0 | 3 | 3 | 3 | 4 | 6 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 1 | 1 | 8 | 6 | 0 | 0 | 2 | 3 | 0 | 1 | 6 | 6 | 1 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 7 | 11 | 2 | 3 | 9 | 2 | 0 | 0 | 5 | 2 | 2 | 1 | 0 | 2 | 12 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 4 | 5 | 1 | 1 | 1 | 4 | 0 | 0 | 5 | 3 | 0 | 0 | 0 | 1 | 0 | 4 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 37 | 74 | 77 | 40 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 24 | 66 | 44 | 94 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 14 | 98 | 91 | 25 | ||||||||||||
| ATP8 (size: 168 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: MPQLNPAPWFSIMIMTWLTLALLIQPKLLAFTTTNPPSNKTSLTTKPTPWSWPWT* | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 3 (5.45%)
Serine (Ser, S)
n = 4 (7.27%)
Threonine (Thr, T)
n = 10 (18.18%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 0 (0%)
Leucine (Leu, L)
n = 8 (14.55%)
Isoleucine (Ile, I)
n = 3 (5.45%)
Methionine (Met, M)
n = 3 (5.45%)
Proline (Pro, P)
n = 9 (16.36%)
Phenylalanine (Phe, F)
n = 2 (3.64%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 0 (0%)
Asparagine (Asn, N)
n = 3 (5.45%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 3 (5.45%)
Arginine (Arg, R)
n = 0 (0%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 1 | 2 | 2 | 1 | 3 | 3 | 0 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 1 | 1 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 0 | 0 | 0 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 6 | 0 | 1 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 7 | 2 | 0 | 0 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 2 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 0 | 0 | 0 | 0 | 0 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 5 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 3 | 18 | 22 | 13 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 5 | 26 | 9 | 16 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 3 | 21 | 27 | 5 | ||||||||||||
| COX1 (size: 1551 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.11%)
Alanine (Ala, A)
n = 44 (8.53%)
Serine (Ser, S)
n = 27 (5.23%)
Threonine (Thr, T)
n = 40 (7.75%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 34 (6.59%)
Leucine (Leu, L)
n = 61 (11.82%)
Isoleucine (Ile, I)
n = 44 (8.53%)
Methionine (Met, M)
n = 24 (4.65%)
Proline (Pro, P)
n = 31 (6.01%)
Phenylalanine (Phe, F)
n = 42 (8.14%)
Tyrosine (Tyr, Y)
n = 17 (3.29%)
Tryptophan (Trp, W)
n = 18 (3.49%)
Aspartic acid (Asp, D)
n = 15 (2.91%)
Glutamic acid (Glu, E)
n = 10 (1.94%)
Asparagine (Asn, N)
n = 15 (2.91%)
Glutamine (Gln, Q)
n = 10 (1.94%)
Histidine (His, H)
n = 19 (3.68%)
Lysine (Lys, K)
n = 9 (1.74%)
Arginine (Arg, R)
n = 8 (1.55%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 10 | 34 | 21 | 2 | 13 | 35 | 6 | 5 | 8 | 2 | 5 | 13 | 15 | 1 | 16 | 26 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 0 | 1 | 8 | 25 | 11 | 0 | 4 | 14 | 25 | 4 | 3 | 16 | 10 | 2 | 10 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 15 | 12 | 3 | 1 | 11 | 10 | 2 | 0 | 3 | 2 | 15 | 0 | 0 | 1 | 14 | 2 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 17 | 8 | 2 | 3 | 12 | 7 | 2 | 0 | 1 | 7 | 0 | 0 | 1 | 0 | 0 | 18 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 150 | 124 | 136 | 107 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 78 | 139 | 95 | 205 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 28 | 230 | 192 | 67 | ||||||||||||
| COX2 (size: 687 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.82%)
Alanine (Ala, A)
n = 13 (5.7%)
Serine (Ser, S)
n = 24 (10.53%)
Threonine (Thr, T)
n = 13 (5.7%)
Cysteine (Cys, C)
n = 3 (1.32%)
Valine (Val, V)
n = 16 (7.02%)
Leucine (Leu, L)
n = 29 (12.72%)
Isoleucine (Ile, I)
n = 18 (7.89%)
Methionine (Met, M)
n = 7 (3.07%)
Proline (Pro, P)
n = 16 (7.02%)
Phenylalanine (Phe, F)
n = 9 (3.95%)
Tyrosine (Tyr, Y)
n = 8 (3.51%)
Tryptophan (Trp, W)
n = 5 (2.19%)
Aspartic acid (Asp, D)
n = 13 (5.7%)
Glutamic acid (Glu, E)
n = 11 (4.82%)
Asparagine (Asn, N)
n = 5 (2.19%)
Glutamine (Gln, Q)
n = 7 (3.07%)
Histidine (His, H)
n = 11 (4.82%)
Lysine (Lys, K)
n = 4 (1.75%)
Arginine (Arg, R)
n = 5 (2.19%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 6 | 12 | 6 | 2 | 10 | 11 | 3 | 2 | 7 | 0 | 4 | 2 | 7 | 3 | 2 | 7 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 0 | 3 | 3 | 7 | 3 | 0 | 1 | 3 | 4 | 3 | 2 | 5 | 9 | 0 | 2 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 6 | 4 | 1 | 1 | 9 | 9 | 2 | 0 | 3 | 1 | 7 | 1 | 1 | 2 | 3 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 10 | 9 | 2 | 1 | 12 | 4 | 0 | 0 | 2 | 2 | 1 | 0 | 0 | 1 | 0 | 4 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 64 | 65 | 50 | 50 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 27 | 63 | 60 | 79 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 18 | 101 | 82 | 28 | ||||||||||||
| COX3 (size: 785 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 20 (7.69%)
Alanine (Ala, A)
n = 21 (8.08%)
Serine (Ser, S)
n = 18 (6.92%)
Threonine (Thr, T)
n = 21 (8.08%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 13 (5.0%)
Leucine (Leu, L)
n = 31 (11.92%)
Isoleucine (Ile, I)
n = 18 (6.92%)
Methionine (Met, M)
n = 10 (3.85%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 25 (9.62%)
Tyrosine (Tyr, Y)
n = 9 (3.46%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 4 (1.54%)
Glutamine (Gln, Q)
n = 6 (2.31%)
Histidine (His, H)
n = 18 (6.92%)
Lysine (Lys, K)
n = 4 (1.54%)
Arginine (Arg, R)
n = 5 (1.92%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 2 | 16 | 8 | 1 | 9 | 15 | 4 | 2 | 6 | 0 | 3 | 5 | 5 | 0 | 1 | 24 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 1 | 0 | 13 | 7 | 1 | 0 | 7 | 11 | 2 | 1 | 3 | 7 | 1 | 2 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 9 | 8 | 2 | 2 | 4 | 7 | 1 | 0 | 4 | 0 | 9 | 0 | 0 | 0 | 4 | 2 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 16 | 7 | 1 | 1 | 4 | 3 | 1 | 0 | 0 | 5 | 0 | 0 | 0 | 0 | 0 | 12 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 67 | 70 | 61 | 63 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 42 | 68 | 54 | 97 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 15 | 128 | 103 | 15 | ||||||||||||
| CYTB (size: 1131 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 23 (6.12%)
Alanine (Ala, A)
n = 34 (9.04%)
Serine (Ser, S)
n = 25 (6.65%)
Threonine (Thr, T)
n = 22 (5.85%)
Cysteine (Cys, C)
n = 5 (1.33%)
Valine (Val, V)
n = 18 (4.79%)
Leucine (Leu, L)
n = 63 (16.76%)
Isoleucine (Ile, I)
n = 32 (8.51%)
Methionine (Met, M)
n = 9 (2.39%)
Proline (Pro, P)
n = 24 (6.38%)
Phenylalanine (Phe, F)
n = 26 (6.91%)
Tyrosine (Tyr, Y)
n = 13 (3.46%)
Tryptophan (Trp, W)
n = 11 (2.93%)
Aspartic acid (Asp, D)
n = 9 (2.39%)
Glutamic acid (Glu, E)
n = 7 (1.86%)
Asparagine (Asn, N)
n = 18 (4.79%)
Glutamine (Gln, Q)
n = 8 (2.13%)
Histidine (His, H)
n = 11 (2.93%)
Lysine (Lys, K)
n = 10 (2.66%)
Arginine (Arg, R)
n = 8 (2.13%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 2 | 30 | 7 | 3 | 15 | 32 | 6 | 7 | 6 | 2 | 0 | 6 | 9 | 3 | 1 | 25 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 5 | 5 | 21 | 8 | 0 | 1 | 7 | 13 | 2 | 2 | 6 | 14 | 2 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 13 | 6 | 0 | 1 | 8 | 13 | 1 | 0 | 2 | 1 | 12 | 1 | 0 | 4 | 14 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 10 | 7 | 0 | 0 | 9 | 10 | 0 | 1 | 2 | 5 | 0 | 0 | 0 | 1 | 0 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 91 | 107 | 93 | 86 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 49 | 103 | 77 | 148 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 19 | 185 | 148 | 25 | ||||||||||||
| ND1 (size: 963 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 10 (3.13%)
Alanine (Ala, A)
n = 32 (10.0%)
Serine (Ser, S)
n = 31 (9.69%)
Threonine (Thr, T)
n = 22 (6.88%)
Cysteine (Cys, C)
n = 4 (1.25%)
Valine (Val, V)
n = 16 (5.0%)
Leucine (Leu, L)
n = 60 (18.75%)
Isoleucine (Ile, I)
n = 15 (4.69%)
Methionine (Met, M)
n = 17 (5.31%)
Proline (Pro, P)
n = 23 (7.19%)
Phenylalanine (Phe, F)
n = 15 (4.69%)
Tyrosine (Tyr, Y)
n = 15 (4.69%)
Tryptophan (Trp, W)
n = 10 (3.13%)
Aspartic acid (Asp, D)
n = 6 (1.88%)
Glutamic acid (Glu, E)
n = 9 (2.81%)
Asparagine (Asn, N)
n = 8 (2.5%)
Glutamine (Gln, Q)
n = 5 (1.56%)
Histidine (His, H)
n = 7 (2.19%)
Lysine (Lys, K)
n = 7 (2.19%)
Arginine (Arg, R)
n = 8 (2.5%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 6 | 9 | 13 | 2 | 14 | 36 | 4 | 2 | 3 | 2 | 3 | 8 | 3 | 2 | 4 | 11 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 0 | 4 | 7 | 12 | 10 | 3 | 2 | 2 | 4 | 2 | 8 | 7 | 8 | 0 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 4 | 12 | 1 | 4 | 5 | 9 | 3 | 0 | 10 | 4 | 11 | 1 | 2 | 1 | 7 | 5 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 2 | 5 | 4 | 1 | 5 | 4 | 3 | 1 | 0 | 5 | 2 | 0 | 1 | 0 | 0 | 9 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 73 | 99 | 80 | 69 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 43 | 98 | 57 | 123 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 34 | 111 | 123 | 53 | ||||||||||||
| ND2 (size: 1039 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 11 (3.19%)
Alanine (Ala, A)
n = 38 (11.01%)
Serine (Ser, S)
n = 31 (8.99%)
Threonine (Thr, T)
n = 36 (10.43%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 12 (3.48%)
Leucine (Leu, L)
n = 65 (18.84%)
Isoleucine (Ile, I)
n = 24 (6.96%)
Methionine (Met, M)
n = 20 (5.8%)
Proline (Pro, P)
n = 23 (6.67%)
Phenylalanine (Phe, F)
n = 13 (3.77%)
Tyrosine (Tyr, Y)
n = 8 (2.32%)
Tryptophan (Trp, W)
n = 10 (2.9%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 12 (3.48%)
Glutamine (Gln, Q)
n = 9 (2.61%)
Histidine (His, H)
n = 9 (2.61%)
Lysine (Lys, K)
n = 14 (4.06%)
Arginine (Arg, R)
n = 3 (0.87%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 7 | 17 | 14 | 7 | 12 | 29 | 10 | 7 | 8 | 1 | 2 | 4 | 5 | 1 | 3 | 10 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 6 | 1 | 0 | 3 | 23 | 10 | 2 | 0 | 7 | 4 | 0 | 2 | 7 | 14 | 0 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 13 | 19 | 1 | 2 | 12 | 8 | 2 | 0 | 7 | 0 | 8 | 1 | 0 | 3 | 9 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 8 | 4 | 1 | 0 | 2 | 13 | 1 | 0 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 9 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 68 | 102 | 113 | 63 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 32 | 121 | 59 | 134 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 26 | 141 | 145 | 34 | ||||||||||||
| ND3 (size: 1039 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 11 (3.19%)
Alanine (Ala, A)
n = 38 (11.01%)
Serine (Ser, S)
n = 31 (8.99%)
Threonine (Thr, T)
n = 36 (10.43%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 12 (3.48%)
Leucine (Leu, L)
n = 65 (18.84%)
Isoleucine (Ile, I)
n = 24 (6.96%)
Methionine (Met, M)
n = 20 (5.8%)
Proline (Pro, P)
n = 23 (6.67%)
Phenylalanine (Phe, F)
n = 13 (3.77%)
Tyrosine (Tyr, Y)
n = 8 (2.32%)
Tryptophan (Trp, W)
n = 10 (2.9%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 12 (3.48%)
Glutamine (Gln, Q)
n = 9 (2.61%)
Histidine (His, H)
n = 9 (2.61%)
Lysine (Lys, K)
n = 14 (4.06%)
Arginine (Arg, R)
n = 3 (0.87%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 7 | 17 | 14 | 7 | 12 | 29 | 10 | 7 | 8 | 1 | 2 | 4 | 5 | 1 | 3 | 10 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 6 | 1 | 0 | 3 | 23 | 10 | 2 | 0 | 7 | 4 | 0 | 2 | 7 | 14 | 0 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 13 | 19 | 1 | 2 | 12 | 8 | 2 | 0 | 7 | 0 | 8 | 1 | 0 | 3 | 9 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 8 | 4 | 1 | 0 | 2 | 13 | 1 | 0 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 9 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 68 | 102 | 113 | 63 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 32 | 121 | 59 | 134 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 26 | 141 | 145 | 34 | ||||||||||||
| ND4 (size: 1379 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 21 (4.59%)
Alanine (Ala, A)
n = 29 (6.33%)
Serine (Ser, S)
n = 39 (8.52%)
Threonine (Thr, T)
n = 46 (10.04%)
Cysteine (Cys, C)
n = 3 (0.66%)
Valine (Val, V)
n = 11 (2.4%)
Leucine (Leu, L)
n = 99 (21.62%)
Isoleucine (Ile, I)
n = 39 (8.52%)
Methionine (Met, M)
n = 27 (5.9%)
Proline (Pro, P)
n = 27 (5.9%)
Phenylalanine (Phe, F)
n = 18 (3.93%)
Tyrosine (Tyr, Y)
n = 14 (3.06%)
Tryptophan (Trp, W)
n = 12 (2.62%)
Aspartic acid (Asp, D)
n = 4 (0.87%)
Glutamic acid (Glu, E)
n = 8 (1.75%)
Asparagine (Asn, N)
n = 12 (2.62%)
Glutamine (Gln, Q)
n = 15 (3.28%)
Histidine (His, H)
n = 14 (3.06%)
Lysine (Lys, K)
n = 10 (2.18%)
Arginine (Arg, R)
n = 11 (2.4%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 8 | 31 | 21 | 2 | 18 | 56 | 14 | 8 | 11 | 4 | 2 | 4 | 4 | 1 | 7 | 11 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 6 | 0 | 3 | 4 | 15 | 10 | 0 | 1 | 8 | 9 | 3 | 1 | 11 | 15 | 0 | 4 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 23 | 15 | 4 | 4 | 13 | 14 | 0 | 0 | 8 | 2 | 12 | 3 | 1 | 1 | 11 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 13 | 7 | 1 | 1 | 3 | 9 | 1 | 1 | 2 | 8 | 0 | 0 | 0 | 0 | 0 | 9 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 73 | 157 | 142 | 87 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 55 | 133 | 77 | 194 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 38 | 186 | 196 | 39 | ||||||||||||
| ND4L (size: 297 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 6 (6.12%)
Alanine (Ala, A)
n = 7 (7.14%)
Serine (Ser, S)
n = 14 (14.29%)
Threonine (Thr, T)
n = 6 (6.12%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 5 (5.1%)
Leucine (Leu, L)
n = 18 (18.37%)
Isoleucine (Ile, I)
n = 4 (4.08%)
Methionine (Met, M)
n = 7 (7.14%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 7 (7.14%)
Tyrosine (Tyr, Y)
n = 1 (1.02%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 3 (3.06%)
Asparagine (Asn, N)
n = 3 (3.06%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 6 (6.12%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 2 (2.04%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 2 | 2 | 4 | 1 | 2 | 11 | 2 | 2 | 2 | 0 | 0 | 1 | 4 | 0 | 0 | 7 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 1 | 2 | 0 | 5 | 0 | 2 | 0 | 4 | 2 | 0 | 0 | 1 | 1 | 0 | 0 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 4 | 2 | 0 | 0 | 5 | 4 | 2 | 0 | 3 | 0 | 1 | 0 | 0 | 0 | 3 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 2 | 1 | 0 | 1 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 1 | 0 | 1 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 22 | 28 | 23 | 26 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 15 | 26 | 17 | 41 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 10 | 45 | 37 | 7 | ||||||||||||
| ND5 (size: 1818 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 33 (5.45%)
Alanine (Ala, A)
n = 58 (9.59%)
Serine (Ser, S)
n = 39 (6.45%)
Threonine (Thr, T)
n = 63 (10.41%)
Cysteine (Cys, C)
n = 6 (0.99%)
Valine (Val, V)
n = 23 (3.8%)
Leucine (Leu, L)
n = 98 (16.2%)
Isoleucine (Ile, I)
n = 50 (8.26%)
Methionine (Met, M)
n = 33 (5.45%)
Proline (Pro, P)
n = 32 (5.29%)
Phenylalanine (Phe, F)
n = 34 (5.62%)
Tyrosine (Tyr, Y)
n = 11 (1.82%)
Tryptophan (Trp, W)
n = 12 (1.98%)
Aspartic acid (Asp, D)
n = 7 (1.16%)
Glutamic acid (Glu, E)
n = 13 (2.15%)
Asparagine (Asn, N)
n = 27 (4.46%)
Glutamine (Gln, Q)
n = 19 (3.14%)
Histidine (His, H)
n = 15 (2.48%)
Lysine (Lys, K)
n = 23 (3.8%)
Arginine (Arg, R)
n = 9 (1.49%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 7 | 43 | 30 | 5 | 23 | 53 | 12 | 4 | 18 | 1 | 1 | 6 | 14 | 2 | 10 | 24 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 0 | 6 | 9 | 33 | 15 | 1 | 1 | 6 | 23 | 3 | 1 | 15 | 16 | 0 | 7 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 34 | 21 | 1 | 4 | 11 | 13 | 2 | 1 | 8 | 0 | 11 | 1 | 1 | 5 | 22 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 14 | 9 | 4 | 2 | 5 | 20 | 3 | 0 | 3 | 6 | 0 | 1 | 0 | 0 | 0 | 11 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 134 | 168 | 206 | 98 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 70 | 183 | 115 | 238 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 34 | 264 | 254 | 54 | ||||||||||||
| ND6 (size: 510 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 28 (16.57%)
Alanine (Ala, A)
n = 15 (8.88%)
Serine (Ser, S)
n = 15 (8.88%)
Threonine (Thr, T)
n = 4 (2.37%)
Cysteine (Cys, C)
n = 6 (3.55%)
Valine (Val, V)
n = 25 (14.79%)
Leucine (Leu, L)
n = 23 (13.61%)
Isoleucine (Ile, I)
n = 3 (1.78%)
Methionine (Met, M)
n = 7 (4.14%)
Proline (Pro, P)
n = 2 (1.18%)
Phenylalanine (Phe, F)
n = 14 (8.28%)
Tyrosine (Tyr, Y)
n = 5 (2.96%)
Tryptophan (Trp, W)
n = 7 (4.14%)
Aspartic acid (Asp, D)
n = 3 (1.78%)
Glutamic acid (Glu, E)
n = 1 (0.59%)
Asparagine (Asn, N)
n = 3 (1.78%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 3 (1.78%)
Lysine (Lys, K)
n = 1 (0.59%)
Arginine (Arg, R)
n = 4 (2.37%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 3 | 0 | 0 | 2 | 0 | 0 | 7 | 6 | 0 | 0 | 11 | 2 | 2 | 10 | 10 | 4 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 7 | 4 | 2 | 4 | 1 | 4 | 6 | 9 | 0 | 1 | 18 | 1 | 0 | 0 | 1 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 0 | 0 | 1 | 3 | 2 | 1 | 4 | 1 | 4 | 5 | 0 | 7 | 8 | 3 | 0 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 0 | 0 | 1 | 3 | 0 | 0 | 1 | 0 | 0 | 0 | 4 | 0 | 0 | 0 | 1 | 0 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 72 | 18 | 23 | 57 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 50 | 31 | 17 | 72 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 76 | 15 | 14 | 65 | ||||||||||||
| Total protein-coding genes (size: 11363 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 220 (5.81%)
Alanine (Ala, A)
n = 321 (8.48%)
Serine (Ser, S)
n = 294 (7.77%)
Threonine (Thr, T)
n = 311 (8.22%)
Cysteine (Cys, C)
n = 35 (0.92%)
Valine (Val, V)
n = 188 (4.97%)
Leucine (Leu, L)
n = 626 (16.54%)
Isoleucine (Ile, I)
n = 274 (7.24%)
Methionine (Met, M)
n = 181 (4.78%)
Proline (Pro, P)
n = 222 (5.87%)
Phenylalanine (Phe, F)
n = 224 (5.92%)
Tyrosine (Tyr, Y)
n = 107 (2.83%)
Tryptophan (Trp, W)
n = 113 (2.99%)
Aspartic acid (Asp, D)
n = 70 (1.85%)
Glutamic acid (Glu, E)
n = 87 (2.3%)
Asparagine (Asn, N)
n = 127 (3.36%)
Glutamine (Gln, Q)
n = 96 (2.54%)
Histidine (His, H)
n = 117 (3.09%)
Lysine (Lys, K)
n = 90 (2.38%)
Arginine (Arg, R)
n = 73 (1.93%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 56 | 218 | 138 | 37 | 139 | 312 | 72 | 53 | 80 | 16 | 31 | 57 | 73 | 27 | 59 | 165 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 43 | 7 | 28 | 45 | 172 | 89 | 15 | 19 | 61 | 102 | 38 | 22 | 83 | 109 | 8 | 44 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 138 | 113 | 16 | 26 | 92 | 97 | 19 | 2 | 58 | 17 | 90 | 16 | 13 | 23 | 104 | 20 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 97 | 67 | 20 | 13 | 57 | 77 | 13 | 3 | 18 | 45 | 7 | 1 | 2 | 6 | 1 | 97 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 886 | 1068 | 1046 | 786 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 504 | 1088 | 701 | 1493 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 326 | 1577 | 1459 | 424 | ||||||||||||
Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​A​n​s​e​r​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ f​a​b​a​l​i​s​"​[​O​r​g​a​n​i​s​m​]​)​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
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If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.
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