Viewing data for Fulica atra


Scientific name Fulica atra
Common name Coot
Maximum lifespan 20.60 years (Fulica atra@AnAge)

Total mtDNA (size: 17029 bases) GC AT G C A T
Base content (bases) 7631 9398 5361 2270 3948 5450
Base content per 1 kb (bases) 448 552 315 133 232 320
Base content (%) 44.8% 55.2%
Total protein-coding genes (size: 10204 bases) GC AT G C A T
Base content (bases) 4634 5570 3455 1179 2325 3245
Base content per 1 kb (bases) 454 546 339 116 228 318
Base content (%) 45.4% 54.6%
D-loop (size: 1510 bases) GC AT G C A T
Base content (bases) 628 882 409 219 420 462
Base content per 1 kb (bases) 416 584 271 145 278 306
Base content (%) 41.6% 58.4%
Total tRNA-coding genes (size: 1545 bases) GC AT G C A T
Base content (bases) 648 897 389 259 385 512
Base content per 1 kb (bases) 419 581 252 168 249 331
Base content (%) 41.9% 58.1%
Total rRNA-coding genes (size: 2550 bases) GC AT G C A T
Base content (bases) 1162 1388 687 475 525 863
Base content per 1 kb (bases) 456 544 269 186 206 338
Base content (%) 45.6% 54.4%
12S rRNA gene (size: 972 bases) GC AT G C A T
Base content (bases) 472 500 281 191 189 311
Base content per 1 kb (bases) 486 514 289 197 194 320
Base content (%) 48.6% 51.4%
16S rRNA gene (size: 1578 bases) GC AT G C A T
Base content (bases) 690 888 406 284 336 552
Base content per 1 kb (bases) 437 563 257 180 213 350
Base content (%) 43.7% 56.3%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 319 365 258 61 158 207
Base content per 1 kb (bases) 466 534 377 89 231 303
Base content (%) 46.6% 53.4%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 72 96 64 8 32 64
Base content per 1 kb (bases) 429 571 381 48 190 381
Base content (%) 42.9% 57.1%
COX1 (size: 1551 bases) GC AT G C A T
Base content (bases) 732 819 490 242 381 438
Base content per 1 kb (bases) 472 528 316 156 246 282
Base content (%) 47.2% 52.8%
COX2 (size: 684 bases) GC AT G C A T
Base content (bases) 302 382 210 92 169 213
Base content per 1 kb (bases) 442 558 307 135 247 311
Base content (%) 44.2% 55.8%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 368 416 255 113 196 220
Base content per 1 kb (bases) 469 531 325 144 250 281
Base content (%) 46.9% 53.1%
CYTB: No data available for this section.
ND1 (size: 960 bases) GC AT G C A T
Base content (bases) 419 541 307 112 243 298
Base content per 1 kb (bases) 436 564 320 117 253 310
Base content (%) 43.6% 56.4%
ND2 (size: 1040 bases) GC AT G C A T
Base content (bases) 452 588 361 91 241 347
Base content per 1 kb (bases) 435 565 347 88 232 334
Base content (%) 43.5% 56.5%
ND3 (size: 352 bases) GC AT G C A T
Base content (bases) 157 195 116 41 96 99
Base content per 1 kb (bases) 446 554 330 116 273 281
Base content (%) 44.6% 55.4%
ND4 (size: 1368 bases) GC AT G C A T
Base content (bases) 608 760 472 136 297 463
Base content per 1 kb (bases) 444 556 345 99 217 338
Base content (%) 44.4% 55.6%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 138 159 99 39 68 91
Base content per 1 kb (bases) 465 535 333 131 229 306
Base content (%) 46.5% 53.5%
ND5 (size: 1812 bases) GC AT G C A T
Base content (bases) 821 991 622 199 398 593
Base content per 1 kb (bases) 453 547 343 110 220 327
Base content (%) 45.3% 54.7%
ND6 (size: 522 bases) GC AT G C A T
Base content (bases) 250 272 203 47 51 221
Base content per 1 kb (bases) 479 521 389 90 98 423
Base content (%) 47.9% 52.1%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 6 (2.64%)
Alanine (Ala, A)
n = 15 (6.61%)
Serine (Ser, S)
n = 16 (7.05%)
Threonine (Thr, T)
n = 24 (10.57%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 5 (2.2%)
Leucine (Leu, L)
n = 60 (26.43%)
Isoleucine (Ile, I)
n = 24 (10.57%)
Methionine (Met, M)
n = 9 (3.96%)
Proline (Pro, P)
n = 18 (7.93%)
Phenylalanine (Phe, F)
n = 7 (3.08%)
Tyrosine (Tyr, Y)
n = 3 (1.32%)
Tryptophan (Trp, W)
n = 4 (1.76%)
Aspartic acid (Asp, D)
n = 2 (0.88%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 9 (3.96%)
Glutamine (Gln, Q)
n = 8 (3.52%)
Histidine (His, H)
n = 4 (1.76%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 5 (2.2%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 19 8 5 17 28 2 7 6 2 0 3 2 0 1 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 0 9 6 0 0 2 4 0 0 9 8 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 10 1 2 6 3 0 1 4 0 3 0 1 1 8 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 4 0 1 1 3 1 0 2 3 0 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
32 87 75 34
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
20 68 35 105
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
9 103 97 19
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPHPWFYIMLMTWLTLSLIIQPKLSSFPTTNPILNKPVTNTKTNPWTWPWT*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 0 (0%)
Serine (Ser, S)
n = 3 (5.45%)
Threonine (Thr, T)
n = 9 (16.36%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 1 (1.82%)
Leucine (Leu, L)
n = 7 (12.73%)
Isoleucine (Ile, I)
n = 4 (7.27%)
Methionine (Met, M)
n = 3 (5.45%)
Proline (Pro, P)
n = 9 (16.36%)
Phenylalanine (Phe, F)
n = 2 (3.64%)
Tyrosine (Tyr, Y)
n = 1 (1.82%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 0 (0%)
Asparagine (Asn, N)
n = 5 (9.09%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 1 (1.82%)
Lysine (Lys, K)
n = 3 (5.45%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 3 2 0 3 4 0 0 1 1 0 1 0 0 0 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 0 0 0 0 0 0 0 0 0 3 6 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 2 0 0 0 3 0 0 0 0 1 0 0 0 5 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 0 0 0 0 3 0 0 0 0 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
1 19 24 12
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
5 21 13 17
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
2 24 27 3
COX1 (size: 1551 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.11%)
Alanine (Ala, A)
n = 46 (8.91%)
Serine (Ser, S)
n = 27 (5.23%)
Threonine (Thr, T)
n = 40 (7.75%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 35 (6.78%)
Leucine (Leu, L)
n = 59 (11.43%)
Isoleucine (Ile, I)
n = 41 (7.95%)
Methionine (Met, M)
n = 27 (5.23%)
Proline (Pro, P)
n = 31 (6.01%)
Phenylalanine (Phe, F)
n = 42 (8.14%)
Tyrosine (Tyr, Y)
n = 16 (3.1%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 15 (2.91%)
Glutamic acid (Glu, E)
n = 10 (1.94%)
Asparagine (Asn, N)
n = 15 (2.91%)
Glutamine (Gln, Q)
n = 9 (1.74%)
Histidine (His, H)
n = 21 (4.07%)
Lysine (Lys, K)
n = 9 (1.74%)
Arginine (Arg, R)
n = 8 (1.55%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 32 24 4 15 28 3 9 9 0 7 10 16 2 11 31
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 1 4 27 15 0 3 19 24 1 5 12 14 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
17 17 0 5 9 10 0 0 3 5 11 2 0 3 12 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
17 10 0 2 13 9 0 0 1 7 0 0 1 0 0 15
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
153 119 136 109
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
77 141 95 204
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
12 230 207 68
COX2 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 15 (6.61%)
Serine (Ser, S)
n = 18 (7.93%)
Threonine (Thr, T)
n = 14 (6.17%)
Cysteine (Cys, C)
n = 3 (1.32%)
Valine (Val, V)
n = 13 (5.73%)
Leucine (Leu, L)
n = 34 (14.98%)
Isoleucine (Ile, I)
n = 20 (8.81%)
Methionine (Met, M)
n = 10 (4.41%)
Proline (Pro, P)
n = 14 (6.17%)
Phenylalanine (Phe, F)
n = 8 (3.52%)
Tyrosine (Tyr, Y)
n = 8 (3.52%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 13 (5.73%)
Glutamic acid (Glu, E)
n = 15 (6.61%)
Asparagine (Asn, N)
n = 5 (2.2%)
Glutamine (Gln, Q)
n = 7 (3.08%)
Histidine (His, H)
n = 8 (3.52%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 5 (2.2%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 10 8 4 11 15 0 4 7 0 1 5 7 0 3 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 2 2 7 6 0 1 2 5 0 2 5 7 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 8 0 5 6 5 0 1 1 1 7 0 0 2 3 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 12 3 1 12 4 0 0 2 3 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
64 64 55 45
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
23 59 61 85
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
5 87 97 39
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (7.31%)
Alanine (Ala, A)
n = 22 (8.46%)
Serine (Ser, S)
n = 22 (8.46%)
Threonine (Thr, T)
n = 19 (7.31%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 12 (4.62%)
Leucine (Leu, L)
n = 34 (13.08%)
Isoleucine (Ile, I)
n = 18 (6.92%)
Methionine (Met, M)
n = 7 (2.69%)
Proline (Pro, P)
n = 13 (5.0%)
Phenylalanine (Phe, F)
n = 25 (9.62%)
Tyrosine (Tyr, Y)
n = 8 (3.08%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 4 (1.54%)
Glutamic acid (Glu, E)
n = 7 (2.69%)
Asparagine (Asn, N)
n = 5 (1.92%)
Glutamine (Gln, Q)
n = 8 (3.08%)
Histidine (His, H)
n = 17 (6.54%)
Lysine (Lys, K)
n = 3 (1.15%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 11 6 2 5 21 0 5 7 1 2 6 3 1 4 21
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 1 1 11 10 0 0 8 11 0 3 3 7 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 7 0 2 5 9 0 2 4 2 6 0 1 0 5 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 5 2 0 4 3 0 0 1 4 0 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
64 71 58 68
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 70 52 96
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
6 114 110 31
CYTB: No data available for this section.
ND1 (size: 960 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (4.08%)
Alanine (Ala, A)
n = 28 (8.78%)
Serine (Ser, S)
n = 26 (8.15%)
Threonine (Thr, T)
n = 25 (7.84%)
Cysteine (Cys, C)
n = 1 (0.31%)
Valine (Val, V)
n = 8 (2.51%)
Leucine (Leu, L)
n = 65 (20.38%)
Isoleucine (Ile, I)
n = 25 (7.84%)
Methionine (Met, M)
n = 14 (4.39%)
Proline (Pro, P)
n = 24 (7.52%)
Phenylalanine (Phe, F)
n = 18 (5.64%)
Tyrosine (Tyr, Y)
n = 15 (4.7%)
Tryptophan (Trp, W)
n = 8 (2.51%)
Aspartic acid (Asp, D)
n = 4 (1.25%)
Glutamic acid (Glu, E)
n = 11 (3.45%)
Asparagine (Asn, N)
n = 11 (3.45%)
Glutamine (Gln, Q)
n = 5 (1.57%)
Histidine (His, H)
n = 3 (0.94%)
Lysine (Lys, K)
n = 7 (2.19%)
Arginine (Arg, R)
n = 8 (2.51%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
6 19 13 7 14 32 2 10 4 1 0 2 4 2 5 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 1 4 8 16 0 0 6 7 0 4 4 16 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 13 0 3 6 11 1 0 5 3 12 1 0 1 10 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 10 1 1 3 5 2 0 2 6 0 0 1 0 0 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
64 95 88 73
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
36 98 56 130
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
12 114 154 40
ND2 (size: 1040 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.48%)
Alanine (Ala, A)
n = 28 (8.12%)
Serine (Ser, S)
n = 29 (8.41%)
Threonine (Thr, T)
n = 45 (13.04%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 5 (1.45%)
Leucine (Leu, L)
n = 68 (19.71%)
Isoleucine (Ile, I)
n = 33 (9.57%)
Methionine (Met, M)
n = 16 (4.64%)
Proline (Pro, P)
n = 23 (6.67%)
Phenylalanine (Phe, F)
n = 13 (3.77%)
Tyrosine (Tyr, Y)
n = 7 (2.03%)
Tryptophan (Trp, W)
n = 10 (2.9%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 13 (3.77%)
Glutamine (Gln, Q)
n = 11 (3.19%)
Histidine (His, H)
n = 9 (2.61%)
Lysine (Lys, K)
n = 13 (3.77%)
Arginine (Arg, R)
n = 4 (1.16%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
6 27 15 8 16 31 3 10 10 1 2 0 3 0 1 12
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 1 5 9 13 1 2 3 6 1 5 8 10 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
16 24 1 1 13 11 0 0 4 2 5 0 0 3 10 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 5 0 0 1 13 0 0 1 2 1 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
51 105 124 66
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
31 121 59 135
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
9 135 163 39
ND3 (size: 1040 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.48%)
Alanine (Ala, A)
n = 28 (8.12%)
Serine (Ser, S)
n = 29 (8.41%)
Threonine (Thr, T)
n = 45 (13.04%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 5 (1.45%)
Leucine (Leu, L)
n = 68 (19.71%)
Isoleucine (Ile, I)
n = 33 (9.57%)
Methionine (Met, M)
n = 16 (4.64%)
Proline (Pro, P)
n = 23 (6.67%)
Phenylalanine (Phe, F)
n = 13 (3.77%)
Tyrosine (Tyr, Y)
n = 7 (2.03%)
Tryptophan (Trp, W)
n = 10 (2.9%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 13 (3.77%)
Glutamine (Gln, Q)
n = 11 (3.19%)
Histidine (His, H)
n = 9 (2.61%)
Lysine (Lys, K)
n = 13 (3.77%)
Arginine (Arg, R)
n = 4 (1.16%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
6 27 15 8 16 31 3 10 10 1 2 0 3 0 1 12
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 1 5 9 13 1 2 3 6 1 5 8 10 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
16 24 1 1 13 11 0 0 4 2 5 0 0 3 10 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 5 0 0 1 13 0 0 1 2 1 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
51 105 124 66
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
31 121 59 135
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
9 135 163 39
ND4 (size: 1368 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (3.96%)
Alanine (Ala, A)
n = 33 (7.25%)
Serine (Ser, S)
n = 33 (7.25%)
Threonine (Thr, T)
n = 53 (11.65%)
Cysteine (Cys, C)
n = 3 (0.66%)
Valine (Val, V)
n = 7 (1.54%)
Leucine (Leu, L)
n = 97 (21.32%)
Isoleucine (Ile, I)
n = 40 (8.79%)
Methionine (Met, M)
n = 30 (6.59%)
Proline (Pro, P)
n = 29 (6.37%)
Phenylalanine (Phe, F)
n = 10 (2.2%)
Tyrosine (Tyr, Y)
n = 12 (2.64%)
Tryptophan (Trp, W)
n = 12 (2.64%)
Aspartic acid (Asp, D)
n = 3 (0.66%)
Glutamic acid (Glu, E)
n = 9 (1.98%)
Asparagine (Asn, N)
n = 13 (2.86%)
Glutamine (Gln, Q)
n = 15 (3.3%)
Histidine (His, H)
n = 18 (3.96%)
Lysine (Lys, K)
n = 9 (1.98%)
Arginine (Arg, R)
n = 11 (2.42%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 33 29 3 24 58 2 10 13 2 0 3 4 0 4 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 3 5 11 16 1 3 8 6 1 1 11 17 0 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
19 24 2 2 5 15 1 2 8 4 8 0 0 1 12 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
17 8 1 0 3 9 0 2 3 6 0 1 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
70 160 156 70
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
55 138 79 184
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
11 174 228 43
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 9 (9.18%)
Serine (Ser, S)
n = 13 (13.27%)
Threonine (Thr, T)
n = 9 (9.18%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 4 (4.08%)
Leucine (Leu, L)
n = 20 (20.41%)
Isoleucine (Ile, I)
n = 2 (2.04%)
Methionine (Met, M)
n = 7 (7.14%)
Proline (Pro, P)
n = 3 (3.06%)
Phenylalanine (Phe, F)
n = 4 (4.08%)
Tyrosine (Tyr, Y)
n = 2 (2.04%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 3 (3.06%)
Asparagine (Asn, N)
n = 3 (3.06%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 5 (5.1%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 2 (2.04%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 1 4 0 4 14 0 1 3 0 0 2 2 0 0 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 3 0 0 4 5 0 0 3 1 0 2 1 0 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 3 0 0 1 8 0 0 4 0 2 0 1 0 3 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 3 0 0 1 0 0 0 0 2 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
21 31 25 22
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
14 30 18 37
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
4 38 48 9
ND5 (size: 1812 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 31 (5.14%)
Alanine (Ala, A)
n = 45 (7.46%)
Serine (Ser, S)
n = 38 (6.3%)
Threonine (Thr, T)
n = 78 (12.94%)
Cysteine (Cys, C)
n = 6 (1.0%)
Valine (Val, V)
n = 18 (2.99%)
Leucine (Leu, L)
n = 105 (17.41%)
Isoleucine (Ile, I)
n = 48 (7.96%)
Methionine (Met, M)
n = 34 (5.64%)
Proline (Pro, P)
n = 28 (4.64%)
Phenylalanine (Phe, F)
n = 28 (4.64%)
Tyrosine (Tyr, Y)
n = 14 (2.32%)
Tryptophan (Trp, W)
n = 12 (1.99%)
Aspartic acid (Asp, D)
n = 8 (1.33%)
Glutamic acid (Glu, E)
n = 14 (2.32%)
Asparagine (Asn, N)
n = 30 (4.98%)
Glutamine (Gln, Q)
n = 18 (2.99%)
Histidine (His, H)
n = 15 (2.49%)
Lysine (Lys, K)
n = 25 (4.15%)
Arginine (Arg, R)
n = 8 (1.33%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 34 32 13 28 48 3 13 15 3 2 7 7 2 6 22
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 6 4 31 10 0 0 15 16 0 3 10 14 1 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
42 26 1 3 14 13 1 0 7 2 12 1 0 3 27 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
15 12 2 0 8 24 1 1 1 5 1 0 0 0 1 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
116 161 222 105
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
64 182 125 233
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
19 279 246 60
ND6 (size: 522 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 27 (15.61%)
Alanine (Ala, A)
n = 10 (5.78%)
Serine (Ser, S)
n = 13 (7.51%)
Threonine (Thr, T)
n = 2 (1.16%)
Cysteine (Cys, C)
n = 3 (1.73%)
Valine (Val, V)
n = 34 (19.65%)
Leucine (Leu, L)
n = 31 (17.92%)
Isoleucine (Ile, I)
n = 4 (2.31%)
Methionine (Met, M)
n = 5 (2.89%)
Proline (Pro, P)
n = 4 (2.31%)
Phenylalanine (Phe, F)
n = 12 (6.94%)
Tyrosine (Tyr, Y)
n = 8 (4.62%)
Tryptophan (Trp, W)
n = 6 (3.47%)
Aspartic acid (Asp, D)
n = 4 (2.31%)
Glutamic acid (Glu, E)
n = 3 (1.73%)
Asparagine (Asn, N)
n = 1 (0.58%)
Glutamine (Gln, Q)
n = 1 (0.58%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 5 (2.89%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 0 1 2 1 0 3 7 0 1 17 2 0 15 12 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 3 0 3 0 2 5 4 1 5 17 2 0 0 2 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 0 0 6 0 1 3 3 0 8 0 5 18 1 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 1 2 3 1 0 0 0 0 0 5 0 0 0 1 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
78 16 15 65
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 26 18 86
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
81 5 18 70
Total protein-coding genes (size: 10221 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 190 (5.58%)
Alanine (Ala, A)
n = 258 (7.58%)
Serine (Ser, S)
n = 245 (7.2%)
Threonine (Thr, T)
n = 330 (9.69%)
Cysteine (Cys, C)
n = 23 (0.68%)
Valine (Val, V)
n = 144 (4.23%)
Leucine (Leu, L)
n = 606 (17.8%)
Isoleucine (Ile, I)
n = 269 (7.9%)
Methionine (Met, M)
n = 165 (4.85%)
Proline (Pro, P)
n = 203 (5.96%)
Phenylalanine (Phe, F)
n = 178 (5.23%)
Tyrosine (Tyr, Y)
n = 97 (2.85%)
Tryptophan (Trp, W)
n = 97 (2.85%)
Aspartic acid (Asp, D)
n = 58 (1.7%)
Glutamic acid (Glu, E)
n = 87 (2.56%)
Asparagine (Asn, N)
n = 113 (3.32%)
Glutamine (Gln, Q)
n = 91 (2.67%)
Histidine (His, H)
n = 101 (2.97%)
Lysine (Lys, K)
n = 78 (2.29%)
Arginine (Arg, R)
n = 63 (1.85%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
72 197 145 50 144 292 19 79 78 13 32 41 49 22 51 127
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
20 8 15 30 120 101 7 14 69 87 20 27 70 102 4 47
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
141 137 5 29 69 91 6 9 41 28 69 9 22 15 98 14
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
87 76 11 9 49 74 4 3 14 39 7 1 2 4 3 88
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
737 963 1008 698
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
426 986 632 1362
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
174 1351 1443 438 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​F​u​l​i​c​a​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ a​t​r​a​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.