Viewing data for Crocodylus porosus
| Scientific name | Crocodylus porosus |
| Common name | Salt-water crocodile |
| Maximum lifespan | 41.70 years (Crocodylus porosus@AnAge) |
| Total mtDNA (size: 16916 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 7290 | 9626 | 4791 | 2499 | 4194 | 5432 |
| Base content per 1 kb (bases) | 431 | 569 | 283 | 148 | 248 | 321 |
| Base content (%) | 43.1% | 56.9% | ||||
| Total protein-coding genes (size: 11382 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 5027 | 6355 | 3475 | 1552 | 2867 | 3488 |
| Base content per 1 kb (bases) | 442 | 558 | 305 | 136 | 252 | 306 |
| Base content (%) | 44.2% | 55.8% | ||||
| D-loop (size: 1181 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 345 | 836 | 204 | 141 | 359 | 477 |
| Base content per 1 kb (bases) | 292 | 708 | 173 | 119 | 304 | 404 |
| Base content (%) | 29.2% | 70.8% | ||||
| Total tRNA-coding genes (size: 11024 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 4819 | 6205 | 3134 | 1685 | 2782 | 3423 |
| Base content per 1 kb (bases) | 437 | 563 | 284 | 153 | 252 | 311 |
| Base content (%) | 43.7% | 56.3% | ||||
| Total rRNA-coding genes (size: 2577 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 1152 | 1425 | 653 | 499 | 534 | 891 |
| Base content per 1 kb (bases) | 447 | 553 | 253 | 194 | 207 | 346 |
| Base content (%) | 44.7% | 55.3% | ||||
| 12S rRNA gene (size: 984 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 469 | 515 | 264 | 205 | 196 | 319 |
| Base content per 1 kb (bases) | 477 | 523 | 268 | 208 | 199 | 324 |
| Base content (%) | 47.7% | 52.3% | ||||
| 16S rRNA gene (size: 1593 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 683 | 910 | 389 | 294 | 338 | 572 |
| Base content per 1 kb (bases) | 429 | 571 | 244 | 185 | 212 | 359 |
| Base content (%) | 42.9% | 57.1% | ||||
| ATP6 (size: 684 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 293 | 391 | 216 | 77 | 168 | 223 |
| Base content per 1 kb (bases) | 428 | 572 | 316 | 113 | 246 | 326 |
| Base content (%) | 42.8% | 57.2% | ||||
| ATP8 (size: 162 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 64 | 98 | 48 | 16 | 38 | 60 |
| Base content per 1 kb (bases) | 395 | 605 | 296 | 99 | 235 | 370 |
| Base content (%) | 39.5% | 60.5% | ||||
| COX1 (size: 1557 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 685 | 872 | 433 | 252 | 417 | 455 |
| Base content per 1 kb (bases) | 440 | 560 | 278 | 162 | 268 | 292 |
| Base content (%) | 44.0% | 56.0% | ||||
| COX2 (size: 684 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 282 | 402 | 188 | 94 | 171 | 231 |
| Base content per 1 kb (bases) | 412 | 588 | 275 | 137 | 250 | 338 |
| Base content (%) | 41.2% | 58.8% | ||||
| COX3 (size: 784 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 363 | 421 | 235 | 128 | 202 | 219 |
| Base content per 1 kb (bases) | 463 | 537 | 300 | 163 | 258 | 279 |
| Base content (%) | 46.3% | 53.7% | ||||
| CYTB (size: 1156 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 525 | 631 | 368 | 157 | 295 | 336 |
| Base content per 1 kb (bases) | 454 | 546 | 318 | 136 | 255 | 291 |
| Base content (%) | 45.4% | 54.6% | ||||
| ND1 (size: 963 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 432 | 531 | 285 | 147 | 260 | 271 |
| Base content per 1 kb (bases) | 449 | 551 | 296 | 153 | 270 | 281 |
| Base content (%) | 44.9% | 55.1% | ||||
| ND2 (size: 1056 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 465 | 591 | 340 | 125 | 270 | 321 |
| Base content per 1 kb (bases) | 440 | 560 | 322 | 118 | 256 | 304 |
| Base content (%) | 44.0% | 56.0% | ||||
| ND3 (size: 348 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 156 | 192 | 93 | 63 | 94 | 98 |
| Base content per 1 kb (bases) | 448 | 552 | 267 | 181 | 270 | 282 |
| Base content (%) | 44.8% | 55.2% | ||||
| ND4 (size: 1374 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 591 | 783 | 419 | 172 | 350 | 433 |
| Base content per 1 kb (bases) | 430 | 570 | 305 | 125 | 255 | 315 |
| Base content (%) | 43.0% | 57.0% | ||||
| ND4L (size: 294 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 132 | 162 | 95 | 37 | 89 | 73 |
| Base content per 1 kb (bases) | 449 | 551 | 323 | 126 | 303 | 248 |
| Base content (%) | 44.9% | 55.1% | ||||
| ND5 (size: 1854 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 837 | 1017 | 593 | 244 | 439 | 578 |
| Base content per 1 kb (bases) | 451 | 549 | 320 | 132 | 237 | 312 |
| Base content (%) | 45.1% | 54.9% | ||||
| ND6 (size: 528 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 231 | 297 | 181 | 50 | 85 | 212 |
| Base content per 1 kb (bases) | 438 | 563 | 343 | 95 | 161 | 402 |
| Base content (%) | 43.8% | 56.3% | ||||
| ATP6 (size: 684 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
Amino acid frequencies:
Glycine (Gly, G)
n = 7 (3.08%) 
Alanine (Ala, A)
n = 17 (7.49%) 
Serine (Ser, S)
n = 12 (5.29%) 
Threonine (Thr, T)
n = 26 (11.45%) 
Cysteine (Cys, C)
n = 0 (0%) 
Valine (Val, V)
n = 8 (3.52%) 
Leucine (Leu, L)
n = 62 (27.31%) 
Isoleucine (Ile, I)
n = 19 (8.37%) 
Methionine (Met, M)
n = 10 (4.41%) 
Proline (Pro, P)
n = 16 (7.05%) 
Phenylalanine (Phe, F)
n = 4 (1.76%) 
Tyrosine (Tyr, Y)
n = 4 (1.76%) 
Tryptophan (Trp, W)
n = 4 (1.76%) 
Aspartic acid (Asp, D)
n = 2 (0.88%) 
Glutamic acid (Glu, E)
n = 4 (1.76%) 
Asparagine (Asn, N)
n = 11 (4.85%) 
Glutamine (Gln, Q)
n = 8 (3.52%) 
Histidine (His, H)
n = 4 (1.76%) 
Lysine (Lys, K)
n = 5 (2.2%) 
Arginine (Arg, R)
n = 4 (1.76%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 7 | 12 | 6 | 8 | 8 | 32 | 5 | 9 | 5 | 3 | 0 | 1 | 6 | 1 | 3 | 1 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 0 | 0 | 0 | 8 | 8 | 1 | 0 | 3 | 3 | 1 | 1 | 2 | 12 | 1 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 9 | 12 | 2 | 2 | 3 | 5 | 0 | 0 | 2 | 1 | 3 | 1 | 0 | 5 | 6 | 2 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 2 | 4 | 0 | 1 | 1 | 2 | 3 | 0 | 1 | 3 | 0 | 0 | 0 | 1 | 0 | 3 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 38 | 85 | 73 | 32 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 17 | 69 | 39 | 103 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 22 | 62 | 111 | 33 | ||||||||||||
| ATP8 (size: 162 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: MPQLNPEPWLMILSITWLVLITSLQPKIASLKFMNSPSSPAQKTTKTWPWPQI* | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 2 (3.77%)
Serine (Ser, S)
n = 6 (11.32%)
Threonine (Thr, T)
n = 5 (9.43%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 1 (1.89%)
Leucine (Leu, L)
n = 7 (13.21%)
Isoleucine (Ile, I)
n = 5 (9.43%)
Methionine (Met, M)
n = 3 (5.66%)
Proline (Pro, P)
n = 8 (15.09%)
Phenylalanine (Phe, F)
n = 1 (1.89%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 4 (7.55%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 1 (1.89%)
Asparagine (Asn, N)
n = 2 (3.77%)
Glutamine (Gln, Q)
n = 4 (7.55%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 4 (7.55%)
Arginine (Arg, R)
n = 0 (0%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 3 | 2 | 2 | 0 | 1 | 2 | 0 | 4 | 3 | 1 | 0 | 0 | 1 | 0 | 0 | 1 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 4 | 3 | 0 | 2 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 1 | 2 | 0 | 1 | 1 | 0 | 0 | 1 | 3 | 0 | 0 | 1 | 0 | 1 | 1 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 0 | 1 | 0 | 0 | 0 | 3 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 3 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 4 | 15 | 23 | 12 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 8 | 17 | 12 | 17 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 4 | 16 | 25 | 9 | ||||||||||||
| COX1 (size: 1557 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 43 (8.3%)
Alanine (Ala, A)
n = 36 (6.95%)
Serine (Ser, S)
n = 35 (6.76%)
Threonine (Thr, T)
n = 39 (7.53%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 40 (7.72%)
Leucine (Leu, L)
n = 54 (10.42%)
Isoleucine (Ile, I)
n = 40 (7.72%)
Methionine (Met, M)
n = 31 (5.98%)
Proline (Pro, P)
n = 30 (5.79%)
Phenylalanine (Phe, F)
n = 46 (8.88%)
Tyrosine (Tyr, Y)
n = 17 (3.28%)
Tryptophan (Trp, W)
n = 17 (3.28%)
Aspartic acid (Asp, D)
n = 14 (2.7%)
Glutamic acid (Glu, E)
n = 9 (1.74%)
Asparagine (Asn, N)
n = 18 (3.47%)
Glutamine (Gln, Q)
n = 11 (2.12%)
Histidine (His, H)
n = 17 (3.28%)
Lysine (Lys, K)
n = 11 (2.12%)
Arginine (Arg, R)
n = 9 (1.74%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 19 | 21 | 26 | 5 | 14 | 23 | 5 | 6 | 9 | 2 | 7 | 10 | 19 | 4 | 19 | 27 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 5 | 0 | 1 | 6 | 17 | 13 | 0 | 2 | 11 | 26 | 4 | 3 | 7 | 18 | 2 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 15 | 15 | 4 | 3 | 8 | 17 | 0 | 2 | 5 | 5 | 12 | 2 | 1 | 5 | 13 | 2 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 15 | 6 | 3 | 5 | 9 | 11 | 0 | 1 | 1 | 6 | 1 | 0 | 0 | 1 | 0 | 15 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 142 | 114 | 146 | 117 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 77 | 133 | 98 | 211 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 33 | 186 | 211 | 89 | ||||||||||||
| COX2 (size: 684 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 10 (4.41%)
Serine (Ser, S)
n = 17 (7.49%)
Threonine (Thr, T)
n = 21 (9.25%)
Cysteine (Cys, C)
n = 3 (1.32%)
Valine (Val, V)
n = 13 (5.73%)
Leucine (Leu, L)
n = 31 (13.66%)
Isoleucine (Ile, I)
n = 16 (7.05%)
Methionine (Met, M)
n = 14 (6.17%)
Proline (Pro, P)
n = 14 (6.17%)
Phenylalanine (Phe, F)
n = 9 (3.96%)
Tyrosine (Tyr, Y)
n = 9 (3.96%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 10 (4.41%)
Glutamic acid (Glu, E)
n = 11 (4.85%)
Asparagine (Asn, N)
n = 8 (3.52%)
Glutamine (Gln, Q)
n = 10 (4.41%)
Histidine (His, H)
n = 10 (4.41%)
Lysine (Lys, K)
n = 3 (1.32%)
Arginine (Arg, R)
n = 5 (2.2%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 7 | 9 | 10 | 3 | 2 | 17 | 3 | 6 | 8 | 2 | 3 | 3 | 7 | 0 | 5 | 4 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 1 | 2 | 2 | 2 | 6 | 0 | 1 | 1 | 3 | 3 | 5 | 2 | 6 | 1 | 0 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 6 | 14 | 1 | 3 | 4 | 5 | 0 | 1 | 4 | 5 | 4 | 1 | 0 | 2 | 6 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 7 | 10 | 1 | 2 | 8 | 3 | 0 | 0 | 3 | 2 | 0 | 0 | 0 | 1 | 0 | 4 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 52 | 64 | 67 | 45 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 26 | 57 | 62 | 83 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 16 | 67 | 102 | 43 | ||||||||||||
| COX3 (size: 784 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 18 (6.92%)
Alanine (Ala, A)
n = 20 (7.69%)
Serine (Ser, S)
n = 16 (6.15%)
Threonine (Thr, T)
n = 24 (9.23%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 15 (5.77%)
Leucine (Leu, L)
n = 34 (13.08%)
Isoleucine (Ile, I)
n = 16 (6.15%)
Methionine (Met, M)
n = 12 (4.62%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 22 (8.46%)
Tyrosine (Tyr, Y)
n = 11 (4.23%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 4 (1.54%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 6 (2.31%)
Glutamine (Gln, Q)
n = 6 (2.31%)
Histidine (His, H)
n = 17 (6.54%)
Lysine (Lys, K)
n = 1 (0.38%)
Arginine (Arg, R)
n = 5 (1.92%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 8 | 8 | 9 | 4 | 3 | 19 | 2 | 6 | 4 | 2 | 2 | 9 | 4 | 0 | 4 | 18 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 1 | 1 | 4 | 10 | 5 | 1 | 1 | 5 | 7 | 5 | 1 | 1 | 10 | 0 | 1 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 12 | 9 | 2 | 1 | 2 | 6 | 1 | 0 | 6 | 6 | 5 | 2 | 0 | 1 | 5 | 4 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 13 | 6 | 2 | 1 | 3 | 1 | 0 | 0 | 0 | 5 | 0 | 0 | 0 | 0 | 0 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 65 | 68 | 65 | 63 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 43 | 66 | 53 | 99 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 20 | 101 | 101 | 39 | ||||||||||||
| CYTB (size: 1156 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 24 (6.25%)
Alanine (Ala, A)
n = 26 (6.77%)
Serine (Ser, S)
n = 27 (7.03%)
Threonine (Thr, T)
n = 27 (7.03%)
Cysteine (Cys, C)
n = 1 (0.26%)
Valine (Val, V)
n = 14 (3.65%)
Leucine (Leu, L)
n = 68 (17.71%)
Isoleucine (Ile, I)
n = 30 (7.81%)
Methionine (Met, M)
n = 17 (4.43%)
Proline (Pro, P)
n = 24 (6.25%)
Phenylalanine (Phe, F)
n = 28 (7.29%)
Tyrosine (Tyr, Y)
n = 15 (3.91%)
Tryptophan (Trp, W)
n = 12 (3.13%)
Aspartic acid (Asp, D)
n = 10 (2.6%)
Glutamic acid (Glu, E)
n = 6 (1.56%)
Asparagine (Asn, N)
n = 16 (4.17%)
Glutamine (Gln, Q)
n = 8 (2.08%)
Histidine (His, H)
n = 12 (3.13%)
Lysine (Lys, K)
n = 9 (2.34%)
Arginine (Arg, R)
n = 11 (2.86%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 8 | 22 | 11 | 5 | 12 | 28 | 7 | 15 | 6 | 2 | 0 | 7 | 6 | 1 | 6 | 22 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 6 | 0 | 1 | 2 | 14 | 10 | 0 | 1 | 4 | 15 | 4 | 2 | 6 | 16 | 0 | 4 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 12 | 11 | 0 | 5 | 9 | 7 | 3 | 0 | 3 | 2 | 13 | 0 | 1 | 3 | 13 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 11 | 6 | 0 | 0 | 10 | 9 | 0 | 2 | 1 | 6 | 2 | 0 | 0 | 0 | 0 | 12 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 80 | 107 | 102 | 96 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 51 | 101 | 76 | 157 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 26 | 160 | 158 | 41 | ||||||||||||
| ND1 (size: 963 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 16 (5.0%)
Alanine (Ala, A)
n = 29 (9.06%)
Serine (Ser, S)
n = 26 (8.13%)
Threonine (Thr, T)
n = 30 (9.38%)
Cysteine (Cys, C)
n = 1 (0.31%)
Valine (Val, V)
n = 15 (4.69%)
Leucine (Leu, L)
n = 65 (20.31%)
Isoleucine (Ile, I)
n = 24 (7.5%)
Methionine (Met, M)
n = 12 (3.75%)
Proline (Pro, P)
n = 18 (5.63%)
Phenylalanine (Phe, F)
n = 18 (5.63%)
Tyrosine (Tyr, Y)
n = 11 (3.44%)
Tryptophan (Trp, W)
n = 8 (2.5%)
Aspartic acid (Asp, D)
n = 3 (0.94%)
Glutamic acid (Glu, E)
n = 10 (3.13%)
Asparagine (Asn, N)
n = 11 (3.44%)
Glutamine (Gln, Q)
n = 6 (1.88%)
Histidine (His, H)
n = 3 (0.94%)
Lysine (Lys, K)
n = 7 (2.19%)
Arginine (Arg, R)
n = 7 (2.19%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 13 | 11 | 10 | 7 | 3 | 30 | 11 | 11 | 6 | 0 | 4 | 6 | 4 | 1 | 7 | 11 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 1 | 3 | 14 | 12 | 0 | 1 | 8 | 3 | 4 | 2 | 7 | 6 | 3 | 1 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 12 | 16 | 1 | 4 | 5 | 9 | 3 | 0 | 5 | 3 | 8 | 1 | 3 | 3 | 8 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 2 | 6 | 4 | 3 | 0 | 6 | 1 | 1 | 1 | 4 | 1 | 0 | 1 | 0 | 0 | 7 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 73 | 85 | 90 | 73 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 38 | 98 | 51 | 134 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 36 | 102 | 130 | 53 | ||||||||||||
| ND2 (size: 1056 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 11 (3.13%)
Alanine (Ala, A)
n = 32 (9.12%)
Serine (Ser, S)
n = 30 (8.55%)
Threonine (Thr, T)
n = 42 (11.97%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 16 (4.56%)
Leucine (Leu, L)
n = 65 (18.52%)
Isoleucine (Ile, I)
n = 34 (9.69%)
Methionine (Met, M)
n = 12 (3.42%)
Proline (Pro, P)
n = 17 (4.84%)
Phenylalanine (Phe, F)
n = 16 (4.56%)
Tyrosine (Tyr, Y)
n = 9 (2.56%)
Tryptophan (Trp, W)
n = 10 (2.85%)
Aspartic acid (Asp, D)
n = 1 (0.28%)
Glutamic acid (Glu, E)
n = 8 (2.28%)
Asparagine (Asn, N)
n = 13 (3.7%)
Glutamine (Gln, Q)
n = 15 (4.27%)
Histidine (His, H)
n = 3 (0.85%)
Lysine (Lys, K)
n = 12 (3.42%)
Arginine (Arg, R)
n = 5 (1.42%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 16 | 18 | 10 | 10 | 12 | 23 | 9 | 10 | 14 | 1 | 2 | 4 | 5 | 5 | 2 | 14 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 0 | 4 | 19 | 8 | 1 | 0 | 6 | 4 | 1 | 3 | 2 | 11 | 1 | 6 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 13 | 22 | 1 | 3 | 15 | 9 | 1 | 0 | 2 | 3 | 6 | 1 | 1 | 3 | 10 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 5 | 3 | 0 | 1 | 11 | 1 | 0 | 2 | 2 | 1 | 0 | 0 | 1 | 0 | 9 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 68 | 94 | 115 | 75 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 28 | 119 | 62 | 143 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 29 | 127 | 144 | 52 | ||||||||||||
| ND3 (size: 1056 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 11 (3.13%)
Alanine (Ala, A)
n = 32 (9.12%)
Serine (Ser, S)
n = 30 (8.55%)
Threonine (Thr, T)
n = 42 (11.97%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 16 (4.56%)
Leucine (Leu, L)
n = 65 (18.52%)
Isoleucine (Ile, I)
n = 34 (9.69%)
Methionine (Met, M)
n = 12 (3.42%)
Proline (Pro, P)
n = 17 (4.84%)
Phenylalanine (Phe, F)
n = 16 (4.56%)
Tyrosine (Tyr, Y)
n = 9 (2.56%)
Tryptophan (Trp, W)
n = 10 (2.85%)
Aspartic acid (Asp, D)
n = 1 (0.28%)
Glutamic acid (Glu, E)
n = 8 (2.28%)
Asparagine (Asn, N)
n = 13 (3.7%)
Glutamine (Gln, Q)
n = 15 (4.27%)
Histidine (His, H)
n = 3 (0.85%)
Lysine (Lys, K)
n = 12 (3.42%)
Arginine (Arg, R)
n = 5 (1.42%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 16 | 18 | 10 | 10 | 12 | 23 | 9 | 10 | 14 | 1 | 2 | 4 | 5 | 5 | 2 | 14 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 0 | 4 | 19 | 8 | 1 | 0 | 6 | 4 | 1 | 3 | 2 | 11 | 1 | 6 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 13 | 22 | 1 | 3 | 15 | 9 | 1 | 0 | 2 | 3 | 6 | 1 | 1 | 3 | 10 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 5 | 3 | 0 | 1 | 11 | 1 | 0 | 2 | 2 | 1 | 0 | 0 | 1 | 0 | 9 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 68 | 94 | 115 | 75 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 28 | 119 | 62 | 143 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 29 | 127 | 144 | 52 | ||||||||||||
| ND4 (size: 1374 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 22 (4.81%)
Alanine (Ala, A)
n = 34 (7.44%)
Serine (Ser, S)
n = 38 (8.32%)
Threonine (Thr, T)
n = 54 (11.82%)
Cysteine (Cys, C)
n = 5 (1.09%)
Valine (Val, V)
n = 15 (3.28%)
Leucine (Leu, L)
n = 91 (19.91%)
Isoleucine (Ile, I)
n = 33 (7.22%)
Methionine (Met, M)
n = 34 (7.44%)
Proline (Pro, P)
n = 23 (5.03%)
Phenylalanine (Phe, F)
n = 15 (3.28%)
Tyrosine (Tyr, Y)
n = 13 (2.84%)
Tryptophan (Trp, W)
n = 11 (2.41%)
Aspartic acid (Asp, D)
n = 6 (1.31%)
Glutamic acid (Glu, E)
n = 7 (1.53%)
Asparagine (Asn, N)
n = 12 (2.63%)
Glutamine (Gln, Q)
n = 17 (3.72%)
Histidine (His, H)
n = 11 (2.41%)
Lysine (Lys, K)
n = 8 (1.75%)
Arginine (Arg, R)
n = 8 (1.75%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 18 | 15 | 26 | 12 | 13 | 41 | 7 | 17 | 15 | 2 | 1 | 4 | 7 | 3 | 6 | 9 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 8 | 0 | 5 | 2 | 18 | 13 | 1 | 3 | 5 | 11 | 3 | 2 | 8 | 13 | 0 | 9 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 21 | 22 | 2 | 3 | 11 | 13 | 3 | 2 | 6 | 4 | 9 | 4 | 1 | 4 | 8 | 2 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 9 | 7 | 0 | 1 | 5 | 8 | 0 | 0 | 0 | 8 | 0 | 0 | 0 | 1 | 0 | 7 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 84 | 132 | 149 | 93 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 54 | 141 | 75 | 188 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 34 | 146 | 209 | 69 | ||||||||||||
| ND4L (size: 294 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.12%)
Alanine (Ala, A)
n = 8 (8.25%)
Serine (Ser, S)
n = 11 (11.34%)
Threonine (Thr, T)
n = 11 (11.34%)
Cysteine (Cys, C)
n = 3 (3.09%)
Valine (Val, V)
n = 2 (2.06%)
Leucine (Leu, L)
n = 22 (22.68%)
Isoleucine (Ile, I)
n = 7 (7.22%)
Methionine (Met, M)
n = 3 (3.09%)
Proline (Pro, P)
n = 2 (2.06%)
Phenylalanine (Phe, F)
n = 8 (8.25%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 1 (1.03%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 2 (2.06%)
Asparagine (Asn, N)
n = 6 (6.19%)
Glutamine (Gln, Q)
n = 1 (1.03%)
Histidine (His, H)
n = 3 (3.09%)
Lysine (Lys, K)
n = 1 (1.03%)
Arginine (Arg, R)
n = 2 (2.06%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 2 | 5 | 2 | 1 | 5 | 8 | 4 | 4 | 1 | 0 | 1 | 0 | 0 | 1 | 3 | 5 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 2 | 1 | 1 | 6 | 1 | 0 | 1 | 2 | 1 | 0 | 2 | 0 | 0 | 0 | 2 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 4 | 5 | 0 | 3 | 1 | 4 | 2 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 5 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 2 | 1 | 1 | 0 | 0 | 1 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 16 | 26 | 29 | 27 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 11 | 31 | 14 | 42 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 10 | 38 | 30 | 20 | ||||||||||||
| ND5 (size: 1854 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 26 (4.21%)
Alanine (Ala, A)
n = 59 (9.56%)
Serine (Ser, S)
n = 51 (8.27%)
Threonine (Thr, T)
n = 62 (10.05%)
Cysteine (Cys, C)
n = 4 (0.65%)
Valine (Val, V)
n = 25 (4.05%)
Leucine (Leu, L)
n = 98 (15.88%)
Isoleucine (Ile, I)
n = 58 (9.4%)
Methionine (Met, M)
n = 34 (5.51%)
Proline (Pro, P)
n = 31 (5.02%)
Phenylalanine (Phe, F)
n = 29 (4.7%)
Tyrosine (Tyr, Y)
n = 15 (2.43%)
Tryptophan (Trp, W)
n = 7 (1.13%)
Aspartic acid (Asp, D)
n = 13 (2.11%)
Glutamic acid (Glu, E)
n = 13 (2.11%)
Asparagine (Asn, N)
n = 24 (3.89%)
Glutamine (Gln, Q)
n = 21 (3.4%)
Histidine (His, H)
n = 15 (2.43%)
Lysine (Lys, K)
n = 24 (3.89%)
Arginine (Arg, R)
n = 8 (1.3%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 20 | 38 | 25 | 9 | 14 | 48 | 13 | 10 | 16 | 5 | 4 | 5 | 13 | 3 | 8 | 21 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 9 | 0 | 4 | 12 | 25 | 20 | 2 | 2 | 10 | 10 | 4 | 5 | 10 | 15 | 1 | 8 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 33 | 19 | 2 | 2 | 17 | 19 | 1 | 2 | 10 | 2 | 13 | 0 | 4 | 5 | 19 | 5 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 10 | 9 | 4 | 2 | 11 | 22 | 2 | 0 | 3 | 4 | 1 | 0 | 0 | 1 | 0 | 7 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 136 | 159 | 214 | 109 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 57 | 191 | 126 | 244 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 51 | 243 | 238 | 86 | ||||||||||||
| ND6 (size: 528 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 30 (17.14%)
Alanine (Ala, A)
n = 13 (7.43%)
Serine (Ser, S)
n = 11 (6.29%)
Threonine (Thr, T)
n = 4 (2.29%)
Cysteine (Cys, C)
n = 6 (3.43%)
Valine (Val, V)
n = 23 (13.14%)
Leucine (Leu, L)
n = 28 (16.0%)
Isoleucine (Ile, I)
n = 8 (4.57%)
Methionine (Met, M)
n = 7 (4.0%)
Proline (Pro, P)
n = 1 (0.57%)
Phenylalanine (Phe, F)
n = 14 (8.0%)
Tyrosine (Tyr, Y)
n = 7 (4.0%)
Tryptophan (Trp, W)
n = 5 (2.86%)
Aspartic acid (Asp, D)
n = 5 (2.86%)
Glutamic acid (Glu, E)
n = 4 (2.29%)
Asparagine (Asn, N)
n = 1 (0.57%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 2 (1.14%)
Lysine (Lys, K)
n = 2 (1.14%)
Arginine (Arg, R)
n = 4 (2.29%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 7 | 1 | 4 | 5 | 1 | 1 | 3 | 11 | 0 | 0 | 9 | 0 | 3 | 11 | 13 | 1 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 6 | 0 | 5 | 2 | 4 | 2 | 8 | 3 | 6 | 13 | 0 | 0 | 0 | 1 | 2 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 0 | 1 | 1 | 2 | 0 | 1 | 1 | 6 | 1 | 6 | 1 | 3 | 7 | 1 | 0 | 2 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 0 | 0 | 4 | 4 | 1 | 1 | 1 | 2 | 0 | 0 | 2 | 0 | 1 | 0 | 0 | 2 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 75 | 17 | 30 | 54 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 53 | 22 | 21 | 80 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 53 | 11 | 34 | 78 | ||||||||||||
| Total protein-coding genes (size: 11444 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 214 (5.61%)
Alanine (Ala, A)
n = 299 (7.84%)
Serine (Ser, S)
n = 286 (7.5%)
Threonine (Thr, T)
n = 353 (9.26%)
Cysteine (Cys, C)
n = 27 (0.71%)
Valine (Val, V)
n = 190 (4.98%)
Leucine (Leu, L)
n = 650 (17.05%)
Isoleucine (Ile, I)
n = 299 (7.84%)
Methionine (Met, M)
n = 197 (5.17%)
Proline (Pro, P)
n = 202 (5.3%)
Phenylalanine (Phe, F)
n = 217 (5.69%)
Tyrosine (Tyr, Y)
n = 113 (2.96%)
Tryptophan (Trp, W)
n = 100 (2.62%)
Aspartic acid (Asp, D)
n = 71 (1.86%)
Glutamic acid (Glu, E)
n = 90 (2.36%)
Asparagine (Asn, N)
n = 130 (3.41%)
Glutamine (Gln, Q)
n = 109 (2.86%)
Histidine (His, H)
n = 97 (2.54%)
Lysine (Lys, K)
n = 89 (2.33%)
Arginine (Arg, R)
n = 70 (1.84%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 131 | 168 | 147 | 72 | 90 | 283 | 73 | 114 | 89 | 20 | 33 | 50 | 77 | 30 | 81 | 136 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 50 | 10 | 17 | 43 | 143 | 104 | 9 | 20 | 60 | 91 | 43 | 27 | 49 | 113 | 13 | 44 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 141 | 152 | 16 | 33 | 77 | 97 | 15 | 15 | 49 | 38 | 75 | 19 | 18 | 35 | 95 | 23 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 74 | 65 | 25 | 19 | 52 | 79 | 10 | 6 | 15 | 41 | 8 | 0 | 2 | 8 | 1 | 81 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 864 | 996 | 1134 | 820 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 477 | 1076 | 708 | 1553 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 352 | 1291 | 1541 | 630 | ||||||||||||
Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​C​r​o​c​o​d​y​l​u​s​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ p​o​r​o​s​u​s​"​[​O​r​g​a​n​i​s​m​]​)​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
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If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.
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