Viewing data for Neophocaena phocaenoides


Scientific name Neophocaena phocaenoides
Common name Finless porpoise
Maximum lifespan 33.00 years (Neophocaena phocaenoides@AnAge)

Total mtDNA (size: 16385 bases) GC AT G C A T
Base content (bases) 6686 9699 4428 2258 4472 5227
Base content per 1 kb (bases) 408 592 270 138 273 319
Base content (%) 40.8% 59.2%
Total protein-coding genes (size: 11351 bases) GC AT G C A T
Base content (bases) 4711 6640 3296 1415 3148 3492
Base content per 1 kb (bases) 415 585 290 125 277 308
Base content (%) 41.5% 58.5%
D-loop (size: 912 bases) GC AT G C A T
Base content (bases) 352 560 223 129 283 277
Base content per 1 kb (bases) 386 614 245 141 310 304
Base content (%) 38.6% 61.4%
Total tRNA-coding genes (size: 1516 bases) GC AT G C A T
Base content (bases) 571 945 330 241 423 522
Base content per 1 kb (bases) 377 623 218 159 279 344
Base content (%) 37.7% 62.3%
Total rRNA-coding genes (size: 2452 bases) GC AT G C A T
Base content (bases) 989 1463 541 448 579 884
Base content per 1 kb (bases) 403 597 221 183 236 361
Base content (%) 40.3% 59.7%
12S rRNA gene (size: 972 bases) GC AT G C A T
Base content (bases) 429 543 239 190 204 339
Base content per 1 kb (bases) 441 559 246 195 210 349
Base content (%) 44.1% 55.9%
16S rRNA gene (size: 1480 bases) GC AT G C A T
Base content (bases) 560 920 302 258 375 545
Base content per 1 kb (bases) 378 622 204 174 253 368
Base content (%) 37.8% 62.2%

ATP6 (size: 681 bases) GC AT G C A T
Base content (bases) 280 401 203 77 193 208
Base content per 1 kb (bases) 411 589 298 113 283 305
Base content (%) 41.1% 58.9%
ATP8 (size: 192 bases) GC AT G C A T
Base content (bases) 82 110 68 14 43 67
Base content per 1 kb (bases) 427 573 354 73 224 349
Base content (%) 42.7% 57.3%
COX1 (size: 1554 bases) GC AT G C A T
Base content (bases) 678 876 393 285 464 412
Base content per 1 kb (bases) 436 564 253 183 299 265
Base content (%) 43.6% 56.4%
COX2 (size: 684 bases) GC AT G C A T
Base content (bases) 273 411 175 98 185 226
Base content per 1 kb (bases) 399 601 256 143 270 330
Base content (%) 39.9% 60.1%
COX3 (size: 785 bases) GC AT G C A T
Base content (bases) 338 447 222 116 239 208
Base content per 1 kb (bases) 431 569 283 148 304 265
Base content (%) 43.1% 56.9%
CYTB (size: 1140 bases) GC AT G C A T
Base content (bases) 488 652 332 156 313 339
Base content per 1 kb (bases) 428 572 291 137 275 297
Base content (%) 42.8% 57.2%
ND1 (size: 957 bases) GC AT G C A T
Base content (bases) 405 552 284 121 262 290
Base content per 1 kb (bases) 423 577 297 126 274 303
Base content (%) 42.3% 57.7%
ND2 (size: 1043 bases) GC AT G C A T
Base content (bases) 398 645 308 90 287 358
Base content per 1 kb (bases) 382 618 295 86 275 343
Base content (%) 38.2% 61.8%
ND3 (size: 347 bases) GC AT G C A T
Base content (bases) 141 206 100 41 100 106
Base content per 1 kb (bases) 406 594 288 118 288 305
Base content (%) 40.6% 59.4%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 560 818 411 149 393 425
Base content per 1 kb (bases) 406 594 298 108 285 308
Base content (%) 40.6% 59.4%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 122 175 84 38 91 84
Base content per 1 kb (bases) 411 589 283 128 306 283
Base content (%) 41.1% 58.9%
ND5 (size: 1821 bases) GC AT G C A T
Base content (bases) 762 1059 566 196 493 566
Base content per 1 kb (bases) 418 582 311 108 271 311
Base content (%) 41.8% 58.2%
ND6 (size: 528 bases) GC AT G C A T
Base content (bases) 204 324 162 42 102 222
Base content per 1 kb (bases) 386 614 307 80 193 420
Base content (%) 38.6% 61.4%

ATP6 (size: 681 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.98%)
Alanine (Ala, A)
n = 17 (7.52%)
Serine (Ser, S)
n = 12 (5.31%)
Threonine (Thr, T)
n = 26 (11.5%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 13 (5.75%)
Leucine (Leu, L)
n = 46 (20.35%)
Isoleucine (Ile, I)
n = 21 (9.29%)
Methionine (Met, M)
n = 14 (6.19%)
Proline (Pro, P)
n = 14 (6.19%)
Phenylalanine (Phe, F)
n = 13 (5.75%)
Tyrosine (Tyr, Y)
n = 2 (0.88%)
Tryptophan (Trp, W)
n = 3 (1.33%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.77%)
Asparagine (Asn, N)
n = 10 (4.42%)
Glutamine (Gln, Q)
n = 8 (3.54%)
Histidine (His, H)
n = 5 (2.21%)
Lysine (Lys, K)
n = 4 (1.77%)
Arginine (Arg, R)
n = 4 (1.77%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 13 10 7 5 16 2 13 6 2 0 6 7 0 6 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 0 3 10 4 0 1 5 3 0 5 5 4 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 12 0 2 1 4 0 3 2 0 2 0 3 4 6 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 3 1 0 1 4 0 0 1 3 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
44 61 80 42
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
21 64 35 107
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
12 78 93 44
ATP8 (size: 192 bases)
Amino acid sequence: MPQLDTSTWLLTILSMIFTLFALLQLKISKHLYSPTPKPTPTKMQEQQAPWNHTWTKIYLPLS*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 2 (3.17%)
Serine (Ser, S)
n = 5 (7.94%)
Threonine (Thr, T)
n = 9 (14.29%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 0 (0%)
Leucine (Leu, L)
n = 11 (17.46%)
Isoleucine (Ile, I)
n = 4 (6.35%)
Methionine (Met, M)
n = 3 (4.76%)
Proline (Pro, P)
n = 7 (11.11%)
Phenylalanine (Phe, F)
n = 2 (3.17%)
Tyrosine (Tyr, Y)
n = 2 (3.17%)
Tryptophan (Trp, W)
n = 3 (4.76%)
Aspartic acid (Asp, D)
n = 1 (1.59%)
Glutamic acid (Glu, E)
n = 1 (1.59%)
Asparagine (Asn, N)
n = 1 (1.59%)
Glutamine (Gln, Q)
n = 5 (7.94%)
Histidine (His, H)
n = 2 (3.17%)
Lysine (Lys, K)
n = 5 (7.94%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
0 4 1 2 4 4 0 0 5 0 0 0 0 0 1 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 0 1 0 1 0 0 0 0 2 3 2 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 5 1 1 2 1 1 0 0 1 1 0 1 1 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 1 0 0 1 5 0 0 0 0 0 0 0 0 1 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
4 24 22 14
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
3 23 18 20
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
7 21 27 9
COX1 (size: 1554 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 48 (9.28%)
Alanine (Ala, A)
n = 38 (7.35%)
Serine (Ser, S)
n = 32 (6.19%)
Threonine (Thr, T)
n = 39 (7.54%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 40 (7.74%)
Leucine (Leu, L)
n = 59 (11.41%)
Isoleucine (Ile, I)
n = 37 (7.16%)
Methionine (Met, M)
n = 30 (5.8%)
Proline (Pro, P)
n = 30 (5.8%)
Phenylalanine (Phe, F)
n = 42 (8.12%)
Tyrosine (Tyr, Y)
n = 19 (3.68%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 15 (2.9%)
Glutamic acid (Glu, E)
n = 10 (1.93%)
Asparagine (Asn, N)
n = 20 (3.87%)
Glutamine (Gln, Q)
n = 8 (1.55%)
Histidine (His, H)
n = 16 (3.09%)
Lysine (Lys, K)
n = 8 (1.55%)
Arginine (Arg, R)
n = 8 (1.55%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
20 17 21 9 4 25 6 12 8 0 7 9 14 10 15 27
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
9 0 1 12 10 14 2 14 11 12 11 14 7 7 2 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 21 2 9 6 12 2 0 3 9 10 3 3 5 15 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 6 4 6 9 7 1 2 1 5 0 0 1 0 0 14
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
151 106 138 123
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
78 136 96 208
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
56 151 178 133
COX2 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 9 (3.96%)
Serine (Ser, S)
n = 18 (7.93%)
Threonine (Thr, T)
n = 19 (8.37%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 12 (5.29%)
Leucine (Leu, L)
n = 34 (14.98%)
Isoleucine (Ile, I)
n = 17 (7.49%)
Methionine (Met, M)
n = 16 (7.05%)
Proline (Pro, P)
n = 13 (5.73%)
Phenylalanine (Phe, F)
n = 7 (3.08%)
Tyrosine (Tyr, Y)
n = 9 (3.96%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 11 (4.85%)
Glutamic acid (Glu, E)
n = 14 (6.17%)
Asparagine (Asn, N)
n = 8 (3.52%)
Glutamine (Gln, Q)
n = 8 (3.52%)
Histidine (His, H)
n = 6 (2.64%)
Lysine (Lys, K)
n = 5 (2.2%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 8 10 2 3 15 3 9 8 0 4 3 5 0 5 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 2 0 2 3 4 0 2 2 1 3 3 7 2 1 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 10 1 3 5 7 0 0 3 6 3 1 2 1 7 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 12 2 4 7 4 1 0 2 4 0 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
54 56 68 50
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
24 56 62 86
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
20 63 96 49
COX3 (size: 785 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 20 (7.69%)
Alanine (Ala, A)
n = 15 (5.77%)
Serine (Ser, S)
n = 21 (8.08%)
Threonine (Thr, T)
n = 24 (9.23%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 15 (5.77%)
Leucine (Leu, L)
n = 35 (13.46%)
Isoleucine (Ile, I)
n = 14 (5.38%)
Methionine (Met, M)
n = 9 (3.46%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 23 (8.85%)
Tyrosine (Tyr, Y)
n = 11 (4.23%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 3 (1.15%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 7 (2.69%)
Glutamine (Gln, Q)
n = 7 (2.69%)
Histidine (His, H)
n = 17 (6.54%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 4 6 14 5 8 1 6 7 0 0 8 6 1 9 14
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 1 5 6 4 0 3 10 5 2 3 3 6 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 12 1 5 1 10 1 2 2 7 4 1 1 0 7 8
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 8 0 1 2 1 1 1 1 2 1 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
61 69 60 71
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
42 68 55 96
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
13 85 92 71
CYTB (size: 1140 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (6.33%)
Alanine (Ala, A)
n = 21 (5.54%)
Serine (Ser, S)
n = 24 (6.33%)
Threonine (Thr, T)
n = 27 (7.12%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 17 (4.49%)
Leucine (Leu, L)
n = 64 (16.89%)
Isoleucine (Ile, I)
n = 41 (10.82%)
Methionine (Met, M)
n = 16 (4.22%)
Proline (Pro, P)
n = 23 (6.07%)
Phenylalanine (Phe, F)
n = 23 (6.07%)
Tyrosine (Tyr, Y)
n = 16 (4.22%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 10 (2.64%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 16 (4.22%)
Glutamine (Gln, Q)
n = 8 (2.11%)
Histidine (His, H)
n = 11 (2.9%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 26 13 4 14 28 5 12 7 1 1 6 8 2 12 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 2 1 6 14 0 5 11 5 3 4 7 10 2 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 16 0 4 6 8 1 0 5 10 6 1 1 3 13 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 3 3 2 8 8 1 2 0 4 2 1 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
78 101 115 86
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
53 90 76 161
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
25 141 148 66
ND1 (size: 957 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (4.09%)
Alanine (Ala, A)
n = 29 (9.12%)
Serine (Ser, S)
n = 23 (7.23%)
Threonine (Thr, T)
n = 24 (7.55%)
Cysteine (Cys, C)
n = 2 (0.63%)
Valine (Val, V)
n = 13 (4.09%)
Leucine (Leu, L)
n = 58 (18.24%)
Isoleucine (Ile, I)
n = 22 (6.92%)
Methionine (Met, M)
n = 22 (6.92%)
Proline (Pro, P)
n = 21 (6.6%)
Phenylalanine (Phe, F)
n = 19 (5.97%)
Tyrosine (Tyr, Y)
n = 9 (2.83%)
Tryptophan (Trp, W)
n = 9 (2.83%)
Aspartic acid (Asp, D)
n = 3 (0.94%)
Glutamic acid (Glu, E)
n = 11 (3.46%)
Asparagine (Asn, N)
n = 13 (4.09%)
Glutamine (Gln, Q)
n = 6 (1.89%)
Histidine (His, H)
n = 5 (1.57%)
Lysine (Lys, K)
n = 8 (2.52%)
Arginine (Arg, R)
n = 8 (2.52%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 9 17 2 12 29 4 11 6 0 3 2 7 1 10 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 2 5 11 12 1 2 6 4 1 7 6 8 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 12 0 4 10 7 0 1 1 2 7 1 0 2 11 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 9 2 0 3 6 2 0 1 7 0 0 0 0 1 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
69 87 91 72
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
34 95 56 134
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
18 102 143 56
ND2 (size: 1043 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (3.76%)
Alanine (Ala, A)
n = 19 (5.49%)
Serine (Ser, S)
n = 24 (6.94%)
Threonine (Thr, T)
n = 48 (13.87%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 7 (2.02%)
Leucine (Leu, L)
n = 64 (18.5%)
Isoleucine (Ile, I)
n = 35 (10.12%)
Methionine (Met, M)
n = 32 (9.25%)
Proline (Pro, P)
n = 20 (5.78%)
Phenylalanine (Phe, F)
n = 13 (3.76%)
Tyrosine (Tyr, Y)
n = 10 (2.89%)
Tryptophan (Trp, W)
n = 10 (2.89%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 4 (1.16%)
Asparagine (Asn, N)
n = 13 (3.76%)
Glutamine (Gln, Q)
n = 12 (3.47%)
Histidine (His, H)
n = 6 (1.73%)
Lysine (Lys, K)
n = 12 (3.47%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
18 17 29 8 14 28 4 9 12 0 1 3 3 0 5 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 4 9 6 0 1 3 8 1 6 5 9 0 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
15 23 1 5 9 7 1 1 1 8 2 2 1 4 9 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 2 2 0 2 10 2 0 1 2 0 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
45 95 142 65
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
28 109 59 151
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
17 104 156 70
ND3 (size: 1043 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (3.76%)
Alanine (Ala, A)
n = 19 (5.49%)
Serine (Ser, S)
n = 24 (6.94%)
Threonine (Thr, T)
n = 48 (13.87%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 7 (2.02%)
Leucine (Leu, L)
n = 64 (18.5%)
Isoleucine (Ile, I)
n = 35 (10.12%)
Methionine (Met, M)
n = 32 (9.25%)
Proline (Pro, P)
n = 20 (5.78%)
Phenylalanine (Phe, F)
n = 13 (3.76%)
Tyrosine (Tyr, Y)
n = 10 (2.89%)
Tryptophan (Trp, W)
n = 10 (2.89%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 4 (1.16%)
Asparagine (Asn, N)
n = 13 (3.76%)
Glutamine (Gln, Q)
n = 12 (3.47%)
Histidine (His, H)
n = 6 (1.73%)
Lysine (Lys, K)
n = 12 (3.47%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
18 17 29 8 14 28 4 9 12 0 1 3 3 0 5 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 4 9 6 0 1 3 8 1 6 5 9 0 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
15 23 1 5 9 7 1 1 1 8 2 2 1 4 9 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 2 2 0 2 10 2 0 1 2 0 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
45 95 142 65
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
28 109 59 151
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
17 104 156 70
ND4 (size: 1378 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (3.93%)
Alanine (Ala, A)
n = 30 (6.55%)
Serine (Ser, S)
n = 39 (8.52%)
Threonine (Thr, T)
n = 41 (8.95%)
Cysteine (Cys, C)
n = 3 (0.66%)
Valine (Val, V)
n = 11 (2.4%)
Leucine (Leu, L)
n = 96 (20.96%)
Isoleucine (Ile, I)
n = 41 (8.95%)
Methionine (Met, M)
n = 33 (7.21%)
Proline (Pro, P)
n = 23 (5.02%)
Phenylalanine (Phe, F)
n = 20 (4.37%)
Tyrosine (Tyr, Y)
n = 16 (3.49%)
Tryptophan (Trp, W)
n = 13 (2.84%)
Aspartic acid (Asp, D)
n = 3 (0.66%)
Glutamic acid (Glu, E)
n = 8 (1.75%)
Asparagine (Asn, N)
n = 19 (4.15%)
Glutamine (Gln, Q)
n = 11 (2.4%)
Histidine (His, H)
n = 13 (2.84%)
Lysine (Lys, K)
n = 11 (2.4%)
Arginine (Arg, R)
n = 10 (2.18%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
19 22 30 13 24 39 4 14 8 3 0 2 7 2 6 14
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 2 8 9 13 0 3 6 8 1 6 11 5 1 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
13 18 1 7 8 10 2 4 8 8 8 1 2 7 12 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 7 1 0 3 9 2 1 2 7 0 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
70 137 157 95
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
56 121 81 201
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
23 153 187 96
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 9 (9.18%)
Serine (Ser, S)
n = 7 (7.14%)
Threonine (Thr, T)
n = 7 (7.14%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 5 (5.1%)
Leucine (Leu, L)
n = 23 (23.47%)
Isoleucine (Ile, I)
n = 8 (8.16%)
Methionine (Met, M)
n = 9 (9.18%)
Proline (Pro, P)
n = 1 (1.02%)
Phenylalanine (Phe, F)
n = 4 (4.08%)
Tyrosine (Tyr, Y)
n = 2 (2.04%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 6 (6.12%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 1 (1.02%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 4 6 3 3 10 1 4 2 0 1 1 2 1 2 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 3 1 4 4 0 1 2 1 0 0 0 1 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 1 1 3 2 2 0 0 0 1 1 0 2 2 4 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 1 1 0 1 0 0 0 0 1 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
21 25 30 23
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
8 24 18 49
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
9 35 36 19
ND5 (size: 1821 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 27 (4.46%)
Alanine (Ala, A)
n = 37 (6.11%)
Serine (Ser, S)
n = 47 (7.76%)
Threonine (Thr, T)
n = 61 (10.07%)
Cysteine (Cys, C)
n = 4 (0.66%)
Valine (Val, V)
n = 17 (2.81%)
Leucine (Leu, L)
n = 102 (16.83%)
Isoleucine (Ile, I)
n = 53 (8.75%)
Methionine (Met, M)
n = 37 (6.11%)
Proline (Pro, P)
n = 30 (4.95%)
Phenylalanine (Phe, F)
n = 41 (6.77%)
Tyrosine (Tyr, Y)
n = 17 (2.81%)
Tryptophan (Trp, W)
n = 12 (1.98%)
Aspartic acid (Asp, D)
n = 10 (1.65%)
Glutamic acid (Glu, E)
n = 12 (1.98%)
Asparagine (Asn, N)
n = 36 (5.94%)
Glutamine (Gln, Q)
n = 18 (2.97%)
Histidine (His, H)
n = 15 (2.48%)
Lysine (Lys, K)
n = 22 (3.63%)
Arginine (Arg, R)
n = 8 (1.32%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
20 33 34 11 22 47 6 15 17 1 4 6 3 4 16 25
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 4 4 22 11 0 2 9 13 3 10 15 3 2 13
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
26 19 3 9 13 14 2 2 7 9 8 3 1 9 27 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 10 2 3 7 19 3 0 6 2 0 0 0 1 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
103 157 218 129
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
60 166 131 250
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
33 243 217 114
ND6 (size: 528 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 28 (16.0%)
Alanine (Ala, A)
n = 7 (4.0%)
Serine (Ser, S)
n = 14 (8.0%)
Threonine (Thr, T)
n = 7 (4.0%)
Cysteine (Cys, C)
n = 2 (1.14%)
Valine (Val, V)
n = 28 (16.0%)
Leucine (Leu, L)
n = 18 (10.29%)
Isoleucine (Ile, I)
n = 13 (7.43%)
Methionine (Met, M)
n = 9 (5.14%)
Proline (Pro, P)
n = 3 (1.71%)
Phenylalanine (Phe, F)
n = 15 (8.57%)
Tyrosine (Tyr, Y)
n = 8 (4.57%)
Tryptophan (Trp, W)
n = 4 (2.29%)
Aspartic acid (Asp, D)
n = 3 (1.71%)
Glutamic acid (Glu, E)
n = 8 (4.57%)
Asparagine (Asn, N)
n = 3 (1.71%)
Glutamine (Gln, Q)
n = 1 (0.57%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 3 (1.71%)
Arginine (Arg, R)
n = 1 (0.57%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 1 6 2 0 2 0 6 0 1 15 0 3 10 15 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 2 0 6 1 0 0 10 1 5 12 3 0 0 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 1 2 3 0 2 3 6 0 5 3 2 8 3 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 4 4 3 0 2 1 0 0 0 1 0 0 1 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
74 9 41 52
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
41 25 27 83
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
47 8 34 87
Total protein-coding genes (size: 11407 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 215 (5.66%)
Alanine (Ala, A)
n = 243 (6.4%)
Serine (Ser, S)
n = 271 (7.13%)
Threonine (Thr, T)
n = 343 (9.03%)
Cysteine (Cys, C)
n = 22 (0.58%)
Valine (Val, V)
n = 179 (4.71%)
Leucine (Leu, L)
n = 639 (16.82%)
Isoleucine (Ile, I)
n = 311 (8.19%)
Methionine (Met, M)
n = 236 (6.21%)
Proline (Pro, P)
n = 203 (5.34%)
Phenylalanine (Phe, F)
n = 231 (6.08%)
Tyrosine (Tyr, Y)
n = 124 (3.26%)
Tryptophan (Trp, W)
n = 104 (2.74%)
Aspartic acid (Asp, D)
n = 66 (1.74%)
Glutamic acid (Glu, E)
n = 93 (2.45%)
Asparagine (Asn, N)
n = 157 (4.13%)
Glutamine (Gln, Q)
n = 97 (2.55%)
Histidine (His, H)
n = 100 (2.63%)
Lysine (Lys, K)
n = 94 (2.47%)
Arginine (Arg, R)
n = 63 (1.66%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
151 160 189 80 117 265 38 114 89 8 36 46 65 32 105 126
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
47 6 16 55 94 88 6 46 66 65 38 64 72 58 9 60
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
115 155 13 56 65 84 13 21 32 68 56 15 25 42 115 24
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
76 70 23 19 47 80 14 7 15 37 4 1 1 5 2 89
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
796 963 1196 845
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
459 1007 738 1596
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
288 1218 1454 840 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​N​e​o​p​h​o​c​a​e​n​a​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ p​h​o​c​a​e​n​o​i​d​e​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.