Scientific name | Acridotheres cristatellus |
Common name | Crested myna |
Maximum lifespan | 13.00 years (Acridotheres cristatellus@AnAge) |
Total mtDNA (size: 16820 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 8016 | 8804 | 5467 | 2549 | 3807 | 4997 |
Base content per 1 kb (bases) | 477 | 523 | 325 | 152 | 226 | 297 |
Base content (%) | 47.7% | 52.3% |
Total protein-coding genes (size: 11378 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 5561 | 5817 | 3985 | 1576 | 2523 | 3294 |
Base content per 1 kb (bases) | 489 | 511 | 350 | 139 | 222 | 290 |
Base content (%) | 48.9% | 51.1% |
Total tRNA-coding genes (size: 1539 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 657 | 882 | 384 | 273 | 383 | 499 |
Base content per 1 kb (bases) | 427 | 573 | 250 | 177 | 249 | 324 |
Base content (%) | 42.7% | 57.3% |
Total rRNA-coding genes (size: 2577 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 1203 | 1374 | 668 | 535 | 537 | 837 |
Base content per 1 kb (bases) | 467 | 533 | 259 | 208 | 208 | 325 |
Base content (%) | 46.7% | 53.3% |
12S rRNA gene (size: 979 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 480 | 499 | 269 | 211 | 202 | 297 |
Base content per 1 kb (bases) | 490 | 510 | 275 | 216 | 206 | 303 |
Base content (%) | 49.0% | 51.0% |
16S rRNA gene (size: 1598 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 723 | 875 | 399 | 324 | 335 | 540 |
Base content per 1 kb (bases) | 452 | 548 | 250 | 203 | 210 | 338 |
Base content (%) | 45.2% | 54.8% |
ATP6 (size: 684 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 335 | 349 | 259 | 76 | 154 | 195 |
Base content per 1 kb (bases) | 490 | 510 | 379 | 111 | 225 | 285 |
Base content (%) | 49.0% | 51.0% |
ATP8 (size: 168 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 72 | 96 | 62 | 10 | 36 | 60 |
Base content per 1 kb (bases) | 429 | 571 | 369 | 60 | 214 | 357 |
Base content (%) | 42.9% | 57.1% |
COX1 (size: 1551 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 762 | 789 | 498 | 264 | 361 | 428 |
Base content per 1 kb (bases) | 491 | 509 | 321 | 170 | 233 | 276 |
Base content (%) | 49.1% | 50.9% |
COX2 (size: 684 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 338 | 346 | 226 | 112 | 148 | 198 |
Base content per 1 kb (bases) | 494 | 506 | 330 | 164 | 216 | 289 |
Base content (%) | 49.4% | 50.6% |
COX3 (size: 784 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 394 | 390 | 272 | 122 | 177 | 213 |
Base content per 1 kb (bases) | 503 | 497 | 347 | 156 | 226 | 272 |
Base content (%) | 50.3% | 49.7% |
CYTB (size: 1143 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 542 | 601 | 390 | 152 | 269 | 332 |
Base content per 1 kb (bases) | 474 | 526 | 341 | 133 | 235 | 290 |
Base content (%) | 47.4% | 52.6% |
ND1 (size: 978 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 500 | 478 | 349 | 151 | 228 | 250 |
Base content per 1 kb (bases) | 511 | 489 | 357 | 154 | 233 | 256 |
Base content (%) | 51.1% | 48.9% |
ND2 (size: 1040 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 495 | 545 | 361 | 134 | 239 | 306 |
Base content per 1 kb (bases) | 476 | 524 | 347 | 129 | 230 | 294 |
Base content (%) | 47.6% | 52.4% |
ND3 (size: 351 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 171 | 180 | 115 | 56 | 87 | 93 |
Base content per 1 kb (bases) | 487 | 513 | 328 | 160 | 248 | 265 |
Base content (%) | 48.7% | 51.3% |
ND4 (size: 1378 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 688 | 690 | 517 | 171 | 295 | 395 |
Base content per 1 kb (bases) | 499 | 501 | 375 | 124 | 214 | 287 |
Base content (%) | 49.9% | 50.1% |
ND4L (size: 297 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 149 | 148 | 105 | 44 | 71 | 77 |
Base content per 1 kb (bases) | 502 | 498 | 354 | 148 | 239 | 259 |
Base content (%) | 50.2% | 49.8% |
ND5 (size: 1818 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 862 | 956 | 633 | 229 | 395 | 561 |
Base content per 1 kb (bases) | 474 | 526 | 348 | 126 | 217 | 309 |
Base content (%) | 47.4% | 52.6% |
ND6 (size: 519 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 258 | 261 | 201 | 57 | 67 | 194 |
Base content per 1 kb (bases) | 497 | 503 | 387 | 110 | 129 | 374 |
Base content (%) | 49.7% | 50.3% |
ATP6 (size: 684 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MNLSFFDQFSSPSLLGIPLILISMTFPALLLPSPGNRWITSRLSTLQLWFINLVTKQLMMPLDKKGHKWALILTSLMIFLLLINLLGLLP View full | |||||||||||||||
Amino acid frequencies: |
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Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
0 | 17 | 6 | 5 | 13 | 32 | 7 | 5 | 7 | 1 | 3 | 2 | 1 | 2 | 1 | 9 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 0 | 0 | 0 | 12 | 4 | 0 | 0 | 7 | 1 | 1 | 3 | 5 | 7 | 1 | 0 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
9 | 13 | 0 | 0 | 8 | 5 | 0 | 0 | 5 | 0 | 3 | 0 | 0 | 0 | 8 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
3 | 4 | 0 | 1 | 1 | 4 | 0 | 0 | 1 | 4 | 0 | 0 | 0 | 1 | 0 | 4 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
39 | 89 | 64 | 36 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
23 | 67 | 33 | 105 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
14 | 103 | 98 | 13 |
ATP8 (size: 168 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MPQLNPNPWFFIMIITWLTFTLIIQPKLLSFTSTNPPHSKKPKTSKTTPWTWPWT* | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
1 | 4 | 0 | 0 | 2 | 3 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 2 | 2 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 3 | 4 | 0 | 0 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
7 | 3 | 0 | 0 | 2 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 2 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
0 | 0 | 0 | 0 | 0 | 3 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 5 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
0 | 17 | 26 | 13 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
6 | 22 | 12 | 16 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
4 | 23 | 22 | 7 |
COX1 (size: 1551 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: VTFITRWLFSTNHKDIGTLYLIFGAWAGMVGTALSLLIRAELGQPGALLGDDQVYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGA View full | |||||||||||||||
Amino acid frequencies: |
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Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
10 | 28 | 14 | 4 | 10 | 39 | 4 | 4 | 10 | 0 | 6 | 7 | 23 | 4 | 4 | 40 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
8 | 0 | 1 | 7 | 27 | 13 | 1 | 1 | 18 | 24 | 4 | 4 | 11 | 14 | 1 | 4 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
17 | 17 | 0 | 1 | 12 | 11 | 0 | 0 | 4 | 2 | 14 | 1 | 1 | 0 | 14 | 2 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
17 | 9 | 1 | 3 | 12 | 9 | 0 | 0 | 2 | 6 | 0 | 0 | 1 | 0 | 0 | 16 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
160 | 124 | 126 | 107 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
78 | 140 | 93 | 206 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
26 | 234 | 209 | 48 |
COX2 (size: 684 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MANHSQFGFQDASSPIMEELMQFHDHALMVALAICSLVLYILTLMLTEKLSSSSVDAQEIELVWTILPAAVLIMLALPSLRILYMMDEIN View full | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
2 | 12 | 4 | 5 | 7 | 17 | 2 | 0 | 6 | 1 | 2 | 7 | 9 | 0 | 2 | 6 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
6 | 1 | 2 | 2 | 12 | 2 | 1 | 1 | 2 | 4 | 1 | 2 | 4 | 6 | 0 | 1 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
6 | 6 | 0 | 1 | 9 | 8 | 0 | 0 | 4 | 2 | 6 | 0 | 0 | 1 | 5 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
7 | 8 | 6 | 0 | 12 | 5 | 0 | 1 | 1 | 4 | 0 | 0 | 0 | 1 | 0 | 5 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
69 | 64 | 52 | 43 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
26 | 60 | 61 | 81 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
17 | 102 | 85 | 24 |
COX3 (size: 784 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MAHQAHSYHMVDPSPWPILGAAAALLTTSGLTMWFHYNSPLLLIIGLTSTLLVMFQWWRDIVRESTFQGHHTPTVQKGLRYGMALFITSE View full | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
2 | 12 | 4 | 3 | 9 | 17 | 2 | 2 | 7 | 0 | 0 | 7 | 9 | 0 | 2 | 21 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
3 | 0 | 1 | 3 | 14 | 7 | 0 | 0 | 7 | 11 | 1 | 2 | 5 | 6 | 0 | 1 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
13 | 9 | 1 | 2 | 4 | 5 | 1 | 1 | 3 | 1 | 10 | 0 | 0 | 1 | 4 | 3 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
13 | 7 | 1 | 0 | 4 | 3 | 0 | 1 | 0 | 3 | 1 | 0 | 0 | 0 | 0 | 12 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
71 | 72 | 57 | 61 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
41 | 73 | 54 | 93 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
10 | 127 | 102 | 22 |
CYTB (size: 1143 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MALNLRKNHPLLKTINDALIDLPTPSNISAWWNFGSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASF View full | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
6 | 25 | 7 | 4 | 16 | 42 | 1 | 4 | 5 | 2 | 0 | 8 | 12 | 1 | 3 | 25 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
1 | 0 | 4 | 6 | 12 | 10 | 1 | 0 | 6 | 14 | 4 | 1 | 13 | 10 | 0 | 4 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
10 | 12 | 0 | 2 | 8 | 9 | 2 | 0 | 1 | 1 | 11 | 1 | 0 | 2 | 19 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
11 | 5 | 2 | 1 | 7 | 10 | 0 | 2 | 0 | 6 | 0 | 0 | 0 | 1 | 0 | 10 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
89 | 114 | 97 | 81 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
48 | 100 | 78 | 155 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
15 | 176 | 157 | 33 |
ND1 (size: 978 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MTNHPMLINLIMALSYALPILIAVAFLTLVERKILSYMQGRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPFLFMATPMLALLLAI View full | |||||||||||||||
Amino acid frequencies: |
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Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
4 | 18 | 9 | 4 | 15 | 33 | 8 | 3 | 4 | 1 | 0 | 7 | 6 | 2 | 3 | 15 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
5 | 0 | 2 | 4 | 17 | 11 | 1 | 0 | 7 | 4 | 4 | 4 | 11 | 11 | 2 | 1 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
11 | 6 | 0 | 1 | 12 | 5 | 0 | 2 | 3 | 5 | 10 | 2 | 0 | 2 | 10 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
3 | 6 | 5 | 0 | 5 | 6 | 1 | 2 | 2 | 3 | 1 | 0 | 1 | 0 | 0 | 6 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
79 | 104 | 79 | 64 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
39 | 97 | 58 | 132 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
33 | 148 | 113 | 32 |
ND2 (size: 1040 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MNPQAKLIFASSLLLGSAITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLLLFSSMINAWHTGQWDITQLT View full | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
11 | 17 | 8 | 6 | 12 | 36 | 6 | 3 | 7 | 4 | 0 | 4 | 6 | 2 | 2 | 11 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
9 | 1 | 3 | 7 | 16 | 14 | 0 | 1 | 3 | 8 | 1 | 3 | 7 | 10 | 0 | 6 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
19 | 14 | 0 | 1 | 16 | 5 | 1 | 0 | 5 | 4 | 4 | 3 | 0 | 0 | 12 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
8 | 3 | 2 | 1 | 1 | 11 | 1 | 1 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 7 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
69 | 103 | 113 | 61 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
36 | 119 | 58 | 133 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
29 | 139 | 134 | 44 |
ND3 (size: 1040 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MNPQAKLIFASSLLLGSAITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLLLFSSMINAWHTGQWDITQLT View full | |||||||||||||||
Amino acid frequencies: |
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Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
11 | 17 | 8 | 6 | 12 | 36 | 6 | 3 | 7 | 4 | 0 | 4 | 6 | 2 | 2 | 11 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
9 | 1 | 3 | 7 | 16 | 14 | 0 | 1 | 3 | 8 | 1 | 3 | 7 | 10 | 0 | 6 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
19 | 14 | 0 | 1 | 16 | 5 | 1 | 0 | 5 | 4 | 4 | 3 | 0 | 0 | 12 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
8 | 3 | 2 | 1 | 1 | 11 | 1 | 1 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 7 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
69 | 103 | 113 | 61 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
36 | 119 | 58 | 133 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
29 | 139 | 134 | 44 |
ND4 (size: 1378 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MLKIIIPTIMLLPLATLSPHKHLWTNITAHSLLIATVSLQWLAPTYYPGKTLTPWASVDQISSPLLVLSCWLLPLMIMASQNHLEQEPPI View full | |||||||||||||||
Amino acid frequencies: |
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Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
7 | 34 | 21 | 4 | 24 | 51 | 10 | 4 | 12 | 1 | 2 | 3 | 7 | 0 | 1 | 11 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
4 | 0 | 3 | 4 | 29 | 8 | 1 | 0 | 9 | 8 | 2 | 3 | 15 | 12 | 1 | 7 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
16 | 15 | 2 | 1 | 17 | 10 | 0 | 1 | 8 | 0 | 12 | 0 | 3 | 0 | 14 | 3 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
14 | 3 | 7 | 1 | 1 | 10 | 0 | 0 | 5 | 5 | 1 | 0 | 0 | 0 | 0 | 12 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
85 | 161 | 139 | 74 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
54 | 141 | 78 | 186 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
32 | 215 | 178 | 34 |
ND4L (size: 297 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MSYLHFSFYAAFTLSSLGLAFHRTHLISALLCLESMMLSLYVALTMWPIQTQTPSASILPIIMLTFSACEAGTGLALLVASTRTHGSDHL View full | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
0 | 5 | 4 | 0 | 0 | 11 | 3 | 4 | 2 | 1 | 0 | 1 | 1 | 0 | 2 | 4 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
1 | 1 | 2 | 0 | 7 | 2 | 1 | 0 | 2 | 1 | 1 | 1 | 0 | 1 | 1 | 1 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
5 | 3 | 0 | 1 | 6 | 1 | 0 | 0 | 4 | 1 | 2 | 1 | 1 | 0 | 2 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
6 | 1 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 1 | 0 | 0 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
19 | 28 | 25 | 27 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
14 | 30 | 18 | 37 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
11 | 47 | 34 | 7 |
ND5 (size: 1818 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MDLPLVLNTFMLLTLTTLLTPIIFPLLSNSLKNTPNTITSTVKTSFLVSLIPMTIFIHSGTESLTSLWEWKFITNFKIPISLKMDFYSLT View full | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
10 | 47 | 19 | 5 | 18 | 64 | 12 | 3 | 18 | 0 | 1 | 5 | 11 | 1 | 3 | 35 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
7 | 2 | 6 | 4 | 30 | 13 | 2 | 1 | 13 | 16 | 4 | 4 | 9 | 18 | 0 | 3 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
37 | 25 | 1 | 2 | 19 | 15 | 1 | 1 | 9 | 2 | 11 | 3 | 0 | 4 | 23 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
11 | 8 | 3 | 1 | 7 | 21 | 0 | 0 | 3 | 3 | 2 | 1 | 0 | 0 | 0 | 9 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
120 | 167 | 208 | 111 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
73 | 183 | 109 | 241 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
36 | 283 | 244 | 43 |
ND6 (size: 519 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MMEFVLFLGLCFILGGLAVASNPSPYYGVVGLVLASVAGCGWLVSLGVSFVGLVLVMVYLGGMLVVFVYSVSLAADPYPEAWADWGVIGY View full | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
5 | 0 | 2 | 3 | 0 | 2 | 5 | 5 | 0 | 0 | 8 | 4 | 6 | 12 | 9 | 1 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
5 | 1 | 1 | 4 | 1 | 2 | 4 | 5 | 0 | 6 | 21 | 2 | 1 | 0 | 1 | 2 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
0 | 0 | 0 | 6 | 1 | 2 | 2 | 1 | 0 | 6 | 1 | 3 | 14 | 2 | 1 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
0 | 1 | 4 | 4 | 0 | 0 | 0 | 0 | 0 | 1 | 3 | 0 | 0 | 0 | 1 | 2 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
82 | 18 | 18 | 55 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
44 | 28 | 20 | 81 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
75 | 11 | 29 | 58 |
Total protein-coding genes (size: 11395 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MTNHPMLINLIMALSYALPILIAVAFLTLVERKILSYMQGRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPFLFMATPMLALLLAI View full | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
58 | 226 | 101 | 45 | 133 | 359 | 65 | 38 | 84 | 11 | 22 | 56 | 93 | 24 | 36 | 186 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
55 | 7 | 25 | 41 | 182 | 90 | 12 | 9 | 75 | 99 | 46 | 31 | 88 | 102 | 7 | 30 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
155 | 125 | 4 | 20 | 116 | 80 | 7 | 6 | 48 | 25 | 85 | 15 | 21 | 13 | 117 | 11 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
93 | 59 | 34 | 12 | 54 | 83 | 5 | 7 | 15 | 41 | 8 | 1 | 2 | 5 | 2 | 92 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
908 | 1100 | 1029 | 760 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
496 | 1090 | 693 | 1518 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
318 | 1654 | 1452 | 373 |
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