Viewing data for Crocodylus rhombifer


Scientific name Crocodylus rhombifer
Common name Cuban crocodile
Maximum lifespan 38.20 years (Crocodylus rhombifer@AnAge)

Total mtDNA (size: 16795 bases) GC AT G C A T
Base content (bases) 7198 9597 4708 2490 4239 5358
Base content per 1 kb (bases) 429 571 280 148 252 319
Base content (%) 42.9% 57.1%
Total protein-coding genes (size: 11388 bases) GC AT G C A T
Base content (bases) 4963 6425 3397 1566 2942 3483
Base content per 1 kb (bases) 436 564 298 138 258 306
Base content (%) 43.6% 56.4%
D-loop (size: 1073 bases) GC AT G C A T
Base content (bases) 333 740 212 121 336 404
Base content per 1 kb (bases) 310 690 198 113 313 377
Base content (%) 31.0% 69.0%
Total tRNA-coding genes (size: 1543 bases) GC AT G C A T
Base content (bases) 661 882 382 279 395 487
Base content per 1 kb (bases) 428 572 248 181 256 316
Base content (%) 42.8% 57.2%
Total rRNA-coding genes (size: 2577 bases) GC AT G C A T
Base content (bases) 1156 1421 649 507 526 895
Base content per 1 kb (bases) 449 551 252 197 204 347
Base content (%) 44.9% 55.1%
12S rRNA gene (size: 984 bases) GC AT G C A T
Base content (bases) 466 518 260 206 195 323
Base content per 1 kb (bases) 474 526 264 209 198 328
Base content (%) 47.4% 52.6%
16S rRNA gene (size: 1593 bases) GC AT G C A T
Base content (bases) 690 903 389 301 331 572
Base content per 1 kb (bases) 433 567 244 189 208 359
Base content (%) 43.3% 56.7%

ATP6 (size: 696 bases) GC AT G C A T
Base content (bases) 309 387 213 96 177 210
Base content per 1 kb (bases) 444 556 306 138 254 302
Base content (%) 44.4% 55.6%
ATP8 (size: 162 bases) GC AT G C A T
Base content (bases) 52 110 39 13 43 67
Base content per 1 kb (bases) 321 679 241 80 265 414
Base content (%) 32.1% 67.9%
COX1 (size: 1557 bases) GC AT G C A T
Base content (bases) 662 895 412 250 436 459
Base content per 1 kb (bases) 425 575 265 161 280 295
Base content (%) 42.5% 57.5%
COX2 (size: 684 bases) GC AT G C A T
Base content (bases) 279 405 185 94 173 232
Base content per 1 kb (bases) 408 592 270 137 253 339
Base content (%) 40.8% 59.2%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 358 426 231 127 211 215
Base content per 1 kb (bases) 457 543 295 162 269 274
Base content (%) 45.7% 54.3%
CYTB (size: 1165 bases) GC AT G C A T
Base content (bases) 515 650 355 160 306 344
Base content per 1 kb (bases) 442 558 305 137 263 295
Base content (%) 44.2% 55.8%
ND1 (size: 963 bases) GC AT G C A T
Base content (bases) 434 529 285 149 263 266
Base content per 1 kb (bases) 451 549 296 155 273 276
Base content (%) 45.1% 54.9%
ND2 (size: 1053 bases) GC AT G C A T
Base content (bases) 465 588 335 130 270 318
Base content per 1 kb (bases) 442 558 318 123 256 302
Base content (%) 44.2% 55.8%
ND3 (size: 348 bases) GC AT G C A T
Base content (bases) 155 193 102 53 89 104
Base content per 1 kb (bases) 445 555 293 152 256 299
Base content (%) 44.5% 55.5%
ND4 (size: 1374 bases) GC AT G C A T
Base content (bases) 592 782 413 179 356 426
Base content per 1 kb (bases) 431 569 301 130 259 310
Base content (%) 43.1% 56.9%
ND4L (size: 294 bases) GC AT G C A T
Base content (bases) 130 164 96 34 87 77
Base content per 1 kb (bases) 442 558 327 116 296 262
Base content (%) 44.2% 55.8%
ND5 (size: 1860 bases) GC AT G C A T
Base content (bases) 818 1042 581 237 458 584
Base content per 1 kb (bases) 440 560 312 127 246 314
Base content (%) 44.0% 56.0%
ND6 (size: 528 bases) GC AT G C A T
Base content (bases) 232 296 174 58 88 208
Base content per 1 kb (bases) 439 561 330 110 167 394
Base content (%) 43.9% 56.1%

ATP6 (size: 696 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 7 (3.03%)
Alanine (Ala, A)
n = 20 (8.66%)
Serine (Ser, S)
n = 12 (5.19%)
Threonine (Thr, T)
n = 25 (10.82%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 9 (3.9%)
Leucine (Leu, L)
n = 62 (26.84%)
Isoleucine (Ile, I)
n = 18 (7.79%)
Methionine (Met, M)
n = 11 (4.76%)
Proline (Pro, P)
n = 15 (6.49%)
Phenylalanine (Phe, F)
n = 5 (2.16%)
Tyrosine (Tyr, Y)
n = 4 (1.73%)
Tryptophan (Trp, W)
n = 4 (1.73%)
Aspartic acid (Asp, D)
n = 2 (0.87%)
Glutamic acid (Glu, E)
n = 4 (1.73%)
Asparagine (Asn, N)
n = 12 (5.19%)
Glutamine (Gln, Q)
n = 7 (3.03%)
Histidine (His, H)
n = 4 (1.73%)
Lysine (Lys, K)
n = 6 (2.6%)
Arginine (Arg, R)
n = 4 (1.73%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 13 7 7 8 21 14 10 6 1 0 1 4 4 4 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 0 3 9 7 1 0 3 3 1 2 1 9 3 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 12 2 3 2 5 1 0 1 3 1 2 2 2 10 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 3 1 0 2 4 2 0 1 3 0 0 0 1 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
42 80 73 37
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
16 71 40 105
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
38 62 97 35
ATP8 (size: 162 bases)
Amino acid sequence: MPQLNPEPWLMISSITWLVFIITLQPKIASMKFMNNPSNPNQKTTKTWSWPQI*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 1 (1.89%)
Serine (Ser, S)
n = 5 (9.43%)
Threonine (Thr, T)
n = 5 (9.43%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 1 (1.89%)
Leucine (Leu, L)
n = 4 (7.55%)
Isoleucine (Ile, I)
n = 6 (11.32%)
Methionine (Met, M)
n = 4 (7.55%)
Proline (Pro, P)
n = 7 (13.21%)
Phenylalanine (Phe, F)
n = 2 (3.77%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 4 (7.55%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 1 (1.89%)
Asparagine (Asn, N)
n = 5 (9.43%)
Glutamine (Gln, Q)
n = 4 (7.55%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 4 (7.55%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 2 2 0 0 1 0 3 4 0 0 0 1 0 1 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 1 0 0 0 0 0 0 0 1 0 6 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 2 0 1 2 1 0 0 1 0 0 2 0 1 4 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 1 0 0 0 3 1 0 0 0 0 0 0 1 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
3 12 25 14
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
5 17 15 17
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
5 10 27 12
COX1 (size: 1557 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 43 (8.3%)
Alanine (Ala, A)
n = 36 (6.95%)
Serine (Ser, S)
n = 35 (6.76%)
Threonine (Thr, T)
n = 38 (7.34%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 39 (7.53%)
Leucine (Leu, L)
n = 54 (10.42%)
Isoleucine (Ile, I)
n = 41 (7.92%)
Methionine (Met, M)
n = 31 (5.98%)
Proline (Pro, P)
n = 31 (5.98%)
Phenylalanine (Phe, F)
n = 47 (9.07%)
Tyrosine (Tyr, Y)
n = 17 (3.28%)
Tryptophan (Trp, W)
n = 17 (3.28%)
Aspartic acid (Asp, D)
n = 14 (2.7%)
Glutamic acid (Glu, E)
n = 9 (1.74%)
Asparagine (Asn, N)
n = 18 (3.47%)
Glutamine (Gln, Q)
n = 12 (2.32%)
Histidine (His, H)
n = 16 (3.09%)
Lysine (Lys, K)
n = 11 (2.12%)
Arginine (Arg, R)
n = 8 (1.54%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
24 17 23 8 10 22 3 7 11 1 9 5 22 3 18 29
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
8 1 0 7 16 13 0 4 9 24 6 3 8 18 2 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 17 1 2 8 15 2 0 8 6 11 0 4 7 11 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
15 8 1 3 11 11 0 1 1 5 1 0 0 1 0 17
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
141 110 147 121
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
77 132 98 212
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
32 170 214 103
COX2 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 10 (4.41%)
Serine (Ser, S)
n = 17 (7.49%)
Threonine (Thr, T)
n = 21 (9.25%)
Cysteine (Cys, C)
n = 3 (1.32%)
Valine (Val, V)
n = 14 (6.17%)
Leucine (Leu, L)
n = 31 (13.66%)
Isoleucine (Ile, I)
n = 15 (6.61%)
Methionine (Met, M)
n = 14 (6.17%)
Proline (Pro, P)
n = 14 (6.17%)
Phenylalanine (Phe, F)
n = 9 (3.96%)
Tyrosine (Tyr, Y)
n = 9 (3.96%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 10 (4.41%)
Glutamic acid (Glu, E)
n = 11 (4.85%)
Asparagine (Asn, N)
n = 8 (3.52%)
Glutamine (Gln, Q)
n = 10 (4.41%)
Histidine (His, H)
n = 10 (4.41%)
Lysine (Lys, K)
n = 3 (1.32%)
Arginine (Arg, R)
n = 5 (2.2%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 7 10 1 6 16 2 5 8 2 4 2 7 1 5 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 3 2 2 6 0 1 1 3 3 3 2 9 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 14 0 4 2 6 0 1 4 6 3 1 1 2 6 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 10 1 1 9 3 0 0 3 2 0 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
53 64 66 45
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
26 57 62 83
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 64 104 45
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (6.92%)
Alanine (Ala, A)
n = 20 (7.69%)
Serine (Ser, S)
n = 16 (6.15%)
Threonine (Thr, T)
n = 23 (8.85%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 15 (5.77%)
Leucine (Leu, L)
n = 34 (13.08%)
Isoleucine (Ile, I)
n = 16 (6.15%)
Methionine (Met, M)
n = 13 (5.0%)
Proline (Pro, P)
n = 13 (5.0%)
Phenylalanine (Phe, F)
n = 22 (8.46%)
Tyrosine (Tyr, Y)
n = 11 (4.23%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 4 (1.54%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 5 (1.92%)
Glutamine (Gln, Q)
n = 6 (2.31%)
Histidine (His, H)
n = 17 (6.54%)
Lysine (Lys, K)
n = 1 (0.38%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 9 9 4 4 15 4 6 6 0 8 4 1 2 6 16
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 1 5 11 4 0 1 7 6 4 1 0 11 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 8 0 0 1 8 0 0 7 5 6 1 1 3 2 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
15 7 1 1 3 1 0 0 0 5 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
65 68 65 63
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 65 52 100
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
18 98 98 47
CYTB (size: 1165 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (6.46%)
Alanine (Ala, A)
n = 26 (6.72%)
Serine (Ser, S)
n = 27 (6.98%)
Threonine (Thr, T)
n = 26 (6.72%)
Cysteine (Cys, C)
n = 1 (0.26%)
Valine (Val, V)
n = 17 (4.39%)
Leucine (Leu, L)
n = 67 (17.31%)
Isoleucine (Ile, I)
n = 29 (7.49%)
Methionine (Met, M)
n = 18 (4.65%)
Proline (Pro, P)
n = 25 (6.46%)
Phenylalanine (Phe, F)
n = 27 (6.98%)
Tyrosine (Tyr, Y)
n = 16 (4.13%)
Tryptophan (Trp, W)
n = 12 (3.1%)
Aspartic acid (Asp, D)
n = 11 (2.84%)
Glutamic acid (Glu, E)
n = 6 (1.55%)
Asparagine (Asn, N)
n = 15 (3.88%)
Glutamine (Gln, Q)
n = 8 (2.07%)
Histidine (His, H)
n = 12 (3.1%)
Lysine (Lys, K)
n = 9 (2.33%)
Arginine (Arg, R)
n = 11 (2.84%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 18 15 8 10 28 6 15 7 1 1 7 8 1 6 21
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 0 4 13 9 0 0 3 18 4 3 4 17 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 9 2 4 9 10 1 1 2 4 12 0 0 2 13 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 6 0 1 10 7 2 0 3 6 2 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
85 108 100 95
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
52 101 77 158
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
23 146 167 52
ND1 (size: 963 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 16 (5.0%)
Alanine (Ala, A)
n = 29 (9.06%)
Serine (Ser, S)
n = 25 (7.81%)
Threonine (Thr, T)
n = 30 (9.38%)
Cysteine (Cys, C)
n = 1 (0.31%)
Valine (Val, V)
n = 16 (5.0%)
Leucine (Leu, L)
n = 65 (20.31%)
Isoleucine (Ile, I)
n = 24 (7.5%)
Methionine (Met, M)
n = 11 (3.44%)
Proline (Pro, P)
n = 17 (5.31%)
Phenylalanine (Phe, F)
n = 19 (5.94%)
Tyrosine (Tyr, Y)
n = 11 (3.44%)
Tryptophan (Trp, W)
n = 8 (2.5%)
Aspartic acid (Asp, D)
n = 3 (0.94%)
Glutamic acid (Glu, E)
n = 10 (3.13%)
Asparagine (Asn, N)
n = 10 (3.13%)
Glutamine (Gln, Q)
n = 7 (2.19%)
Histidine (His, H)
n = 4 (1.25%)
Lysine (Lys, K)
n = 7 (2.19%)
Arginine (Arg, R)
n = 7 (2.19%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 15 10 5 5 28 9 14 5 2 3 7 3 3 10 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 1 5 12 12 0 3 7 4 2 1 8 6 2 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
14 13 3 4 5 7 4 3 2 4 7 0 4 0 10 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 6 4 2 1 6 1 1 1 4 1 0 1 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
74 82 88 77
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
38 96 52 135
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
37 107 126 51
ND2 (size: 1053 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.43%)
Alanine (Ala, A)
n = 28 (8.0%)
Serine (Ser, S)
n = 30 (8.57%)
Threonine (Thr, T)
n = 44 (12.57%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 16 (4.57%)
Leucine (Leu, L)
n = 65 (18.57%)
Isoleucine (Ile, I)
n = 33 (9.43%)
Methionine (Met, M)
n = 11 (3.14%)
Proline (Pro, P)
n = 18 (5.14%)
Phenylalanine (Phe, F)
n = 15 (4.29%)
Tyrosine (Tyr, Y)
n = 8 (2.29%)
Tryptophan (Trp, W)
n = 10 (2.86%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 8 (2.29%)
Asparagine (Asn, N)
n = 12 (3.43%)
Glutamine (Gln, Q)
n = 14 (4.0%)
Histidine (His, H)
n = 6 (1.71%)
Lysine (Lys, K)
n = 12 (3.43%)
Arginine (Arg, R)
n = 6 (1.71%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
18 15 8 12 9 27 6 8 12 2 2 4 6 4 1 14
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 1 4 15 8 1 2 4 5 1 1 6 11 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
14 20 4 5 13 6 2 0 4 3 5 3 3 4 8 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 5 3 0 1 12 0 0 2 4 0 0 0 1 0 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
65 98 116 72
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
33 116 62 140
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
32 121 140 58
ND3 (size: 1053 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.43%)
Alanine (Ala, A)
n = 28 (8.0%)
Serine (Ser, S)
n = 30 (8.57%)
Threonine (Thr, T)
n = 44 (12.57%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 16 (4.57%)
Leucine (Leu, L)
n = 65 (18.57%)
Isoleucine (Ile, I)
n = 33 (9.43%)
Methionine (Met, M)
n = 11 (3.14%)
Proline (Pro, P)
n = 18 (5.14%)
Phenylalanine (Phe, F)
n = 15 (4.29%)
Tyrosine (Tyr, Y)
n = 8 (2.29%)
Tryptophan (Trp, W)
n = 10 (2.86%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 8 (2.29%)
Asparagine (Asn, N)
n = 12 (3.43%)
Glutamine (Gln, Q)
n = 14 (4.0%)
Histidine (His, H)
n = 6 (1.71%)
Lysine (Lys, K)
n = 12 (3.43%)
Arginine (Arg, R)
n = 6 (1.71%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
18 15 8 12 9 27 6 8 12 2 2 4 6 4 1 14
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 1 4 15 8 1 2 4 5 1 1 6 11 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
14 20 4 5 13 6 2 0 4 3 5 3 3 4 8 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 5 3 0 1 12 0 0 2 4 0 0 0 1 0 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
65 98 116 72
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
33 116 62 140
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
32 121 140 58
ND4 (size: 1374 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 22 (4.81%)
Alanine (Ala, A)
n = 30 (6.56%)
Serine (Ser, S)
n = 41 (8.97%)
Threonine (Thr, T)
n = 53 (11.6%)
Cysteine (Cys, C)
n = 5 (1.09%)
Valine (Val, V)
n = 16 (3.5%)
Leucine (Leu, L)
n = 92 (20.13%)
Isoleucine (Ile, I)
n = 36 (7.88%)
Methionine (Met, M)
n = 34 (7.44%)
Proline (Pro, P)
n = 22 (4.81%)
Phenylalanine (Phe, F)
n = 14 (3.06%)
Tyrosine (Tyr, Y)
n = 13 (2.84%)
Tryptophan (Trp, W)
n = 11 (2.41%)
Aspartic acid (Asp, D)
n = 7 (1.53%)
Glutamic acid (Glu, E)
n = 7 (1.53%)
Asparagine (Asn, N)
n = 9 (1.97%)
Glutamine (Gln, Q)
n = 18 (3.94%)
Histidine (His, H)
n = 10 (2.19%)
Lysine (Lys, K)
n = 8 (1.75%)
Arginine (Arg, R)
n = 9 (1.97%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
23 13 28 14 11 42 6 16 17 1 2 3 8 3 7 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 5 1 18 7 4 2 8 11 1 1 8 11 2 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
20 23 3 3 13 12 2 1 10 5 8 6 3 3 6 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 6 1 0 7 8 0 1 0 7 1 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
82 132 151 93
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
58 135 73 192
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
39 146 202 71
ND4L (size: 294 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.12%)
Alanine (Ala, A)
n = 8 (8.25%)
Serine (Ser, S)
n = 10 (10.31%)
Threonine (Thr, T)
n = 11 (11.34%)
Cysteine (Cys, C)
n = 3 (3.09%)
Valine (Val, V)
n = 2 (2.06%)
Leucine (Leu, L)
n = 24 (24.74%)
Isoleucine (Ile, I)
n = 7 (7.22%)
Methionine (Met, M)
n = 3 (3.09%)
Proline (Pro, P)
n = 2 (2.06%)
Phenylalanine (Phe, F)
n = 6 (6.19%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 1 (1.03%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 2 (2.06%)
Asparagine (Asn, N)
n = 7 (7.22%)
Glutamine (Gln, Q)
n = 1 (1.03%)
Histidine (His, H)
n = 3 (3.09%)
Lysine (Lys, K)
n = 1 (1.03%)
Arginine (Arg, R)
n = 2 (2.06%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 4 2 1 6 9 4 3 1 0 0 1 1 0 3 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 2 1 1 6 1 0 0 3 0 1 1 1 0 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 5 0 3 1 6 0 0 0 0 0 1 1 3 4 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 2 0 0 0 1 0 0 1 1 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
16 28 29 25
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
10 31 15 42
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
8 37 33 20
ND5 (size: 1860 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (4.2%)
Alanine (Ala, A)
n = 50 (8.08%)
Serine (Ser, S)
n = 63 (10.18%)
Threonine (Thr, T)
n = 62 (10.02%)
Cysteine (Cys, C)
n = 4 (0.65%)
Valine (Val, V)
n = 19 (3.07%)
Leucine (Leu, L)
n = 100 (16.16%)
Isoleucine (Ile, I)
n = 63 (10.18%)
Methionine (Met, M)
n = 37 (5.98%)
Proline (Pro, P)
n = 29 (4.68%)
Phenylalanine (Phe, F)
n = 28 (4.52%)
Tyrosine (Tyr, Y)
n = 17 (2.75%)
Tryptophan (Trp, W)
n = 7 (1.13%)
Aspartic acid (Asp, D)
n = 13 (2.1%)
Glutamic acid (Glu, E)
n = 15 (2.42%)
Asparagine (Asn, N)
n = 22 (3.55%)
Glutamine (Gln, Q)
n = 19 (3.07%)
Histidine (His, H)
n = 12 (1.94%)
Lysine (Lys, K)
n = 23 (3.72%)
Arginine (Arg, R)
n = 10 (1.62%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
27 36 28 9 18 40 17 14 15 4 2 4 11 2 9 19
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
9 1 3 8 23 17 2 2 10 10 4 3 10 16 0 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
30 20 2 4 18 24 1 2 14 5 12 1 2 4 18 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 13 2 2 11 20 3 0 4 4 2 0 0 1 0 6
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
123 154 223 120
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
63 188 122 247
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
51 239 239 91
ND6 (size: 528 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 27 (15.43%)
Alanine (Ala, A)
n = 13 (7.43%)
Serine (Ser, S)
n = 12 (6.86%)
Threonine (Thr, T)
n = 5 (2.86%)
Cysteine (Cys, C)
n = 7 (4.0%)
Valine (Val, V)
n = 25 (14.29%)
Leucine (Leu, L)
n = 27 (15.43%)
Isoleucine (Ile, I)
n = 6 (3.43%)
Methionine (Met, M)
n = 8 (4.57%)
Proline (Pro, P)
n = 1 (0.57%)
Phenylalanine (Phe, F)
n = 14 (8.0%)
Tyrosine (Tyr, Y)
n = 7 (4.0%)
Tryptophan (Trp, W)
n = 5 (2.86%)
Aspartic acid (Asp, D)
n = 5 (2.86%)
Glutamic acid (Glu, E)
n = 4 (2.29%)
Asparagine (Asn, N)
n = 1 (0.57%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 2 (1.14%)
Lysine (Lys, K)
n = 2 (1.14%)
Arginine (Arg, R)
n = 4 (2.29%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 1 4 4 1 3 2 10 0 0 9 1 3 12 12 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 6 1 6 2 3 2 6 5 6 10 0 0 0 1 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 1 1 3 0 1 0 7 1 7 0 3 7 1 0 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 1 3 4 1 1 1 1 1 1 1 0 1 0 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
74 17 31 54
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
52 23 21 80
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
48 18 36 74
Total protein-coding genes (size: 11468 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 213 (5.57%)
Alanine (Ala, A)
n = 284 (7.43%)
Serine (Ser, S)
n = 298 (7.8%)
Threonine (Thr, T)
n = 351 (9.19%)
Cysteine (Cys, C)
n = 29 (0.76%)
Valine (Val, V)
n = 191 (5.0%)
Leucine (Leu, L)
n = 650 (17.01%)
Isoleucine (Ile, I)
n = 305 (7.98%)
Methionine (Met, M)
n = 201 (5.26%)
Proline (Pro, P)
n = 200 (5.23%)
Phenylalanine (Phe, F)
n = 216 (5.65%)
Tyrosine (Tyr, Y)
n = 115 (3.01%)
Tryptophan (Trp, W)
n = 100 (2.62%)
Aspartic acid (Asp, D)
n = 73 (1.91%)
Glutamic acid (Glu, E)
n = 92 (2.41%)
Asparagine (Asn, N)
n = 127 (3.32%)
Glutamine (Gln, Q)
n = 108 (2.83%)
Histidine (His, H)
n = 96 (2.51%)
Lysine (Lys, K)
n = 89 (2.33%)
Arginine (Arg, R)
n = 73 (1.91%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
147 158 151 75 91 264 77 115 94 14 40 39 77 35 85 131
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
50 12 17 47 135 92 10 22 61 93 37 20 49 118 13 51
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
134 147 19 37 75 103 13 15 55 49 66 20 28 32 95 22
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
74 73 19 14 59 79 10 4 19 42 8 0 2 8 1 80
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
853 984 1145 840
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
487 1063 709 1563
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
356 1258 1536 672 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​C​r​o​c​o​d​y​l​u​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ r​h​o​m​b​i​f​e​r​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.