Viewing data for Nemipterus japonicus


Scientific name Nemipterus japonicus
Common name Japanese threadfin-bream
Maximum lifespan 8.00 years (Nemipterus japonicus@AnAge)

Total mtDNA (size: 16995 bases) GC AT G C A T
Base content (bases) 7315 9680 4519 2796 4741 4939
Base content per 1 kb (bases) 430 570 266 165 279 291
Base content (%) 43.0% 57.0%
Total protein-coding genes (size: 11407 bases) GC AT G C A T
Base content (bases) 4995 6412 3248 1747 3295 3117
Base content per 1 kb (bases) 438 562 285 153 289 273
Base content (%) 43.8% 56.2%
D-loop (size: 1260 bases) GC AT G C A T
Base content (bases) 403 857 218 185 413 444
Base content per 1 kb (bases) 320 680 173 147 328 352
Base content (%) 32.0% 68.0%
Total tRNA-coding genes (size: 1549 bases) GC AT G C A T
Base content (bases) 672 877 373 299 394 483
Base content per 1 kb (bases) 434 566 241 193 254 312
Base content (%) 43.4% 56.6%
Total rRNA-coding genes (size: 2652 bases) GC AT G C A T
Base content (bases) 1191 1461 654 537 604 857
Base content per 1 kb (bases) 449 551 247 202 228 323
Base content (%) 44.9% 55.1%
12S rRNA gene (size: 939 bases) GC AT G C A T
Base content (bases) 461 478 251 210 202 276
Base content per 1 kb (bases) 491 509 267 224 215 294
Base content (%) 49.1% 50.9%
16S rRNA gene (size: 1713 bases) GC AT G C A T
Base content (bases) 730 983 403 327 402 581
Base content per 1 kb (bases) 426 574 235 191 235 339
Base content (%) 42.6% 57.4%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 299 385 205 94 199 186
Base content per 1 kb (bases) 437 563 300 137 291 272
Base content (%) 43.7% 56.3%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 75 93 53 22 44 49
Base content per 1 kb (bases) 446 554 315 131 262 292
Base content (%) 44.6% 55.4%
COX1 (size: 1551 bases) GC AT G C A T
Base content (bases) 677 874 395 282 479 395
Base content per 1 kb (bases) 436 564 255 182 309 255
Base content (%) 43.6% 56.4%
COX2 (size: 691 bases) GC AT G C A T
Base content (bases) 293 398 183 110 201 197
Base content per 1 kb (bases) 424 576 265 159 291 285
Base content (%) 42.4% 57.6%
COX3 (size: 785 bases) GC AT G C A T
Base content (bases) 360 425 220 140 220 205
Base content per 1 kb (bases) 459 541 280 178 280 261
Base content (%) 45.9% 54.1%
CYTB (size: 1141 bases) GC AT G C A T
Base content (bases) 515 626 336 179 336 290
Base content per 1 kb (bases) 451 549 294 157 294 254
Base content (%) 45.1% 54.9%
ND1 (size: 975 bases) GC AT G C A T
Base content (bases) 436 539 285 151 295 244
Base content per 1 kb (bases) 447 553 292 155 303 250
Base content (%) 44.7% 55.3%
ND2 (size: 1049 bases) GC AT G C A T
Base content (bases) 456 593 323 133 288 305
Base content per 1 kb (bases) 435 565 308 127 275 291
Base content (%) 43.5% 56.5%
ND3 (size: 349 bases) GC AT G C A T
Base content (bases) 153 196 97 56 111 85
Base content per 1 kb (bases) 438 562 278 160 318 244
Base content (%) 43.8% 56.2%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 601 777 387 214 418 359
Base content per 1 kb (bases) 436 564 281 155 303 261
Base content (%) 43.6% 56.4%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 145 152 95 50 82 70
Base content per 1 kb (bases) 488 512 320 168 276 236
Base content (%) 48.8% 51.2%
ND5 (size: 1839 bases) GC AT G C A T
Base content (bases) 762 1077 514 248 536 541
Base content per 1 kb (bases) 414 586 279 135 291 294
Base content (%) 41.4% 58.6%
ND6 (size: 522 bases) GC AT G C A T
Base content (bases) 228 294 158 70 92 202
Base content per 1 kb (bases) 437 563 303 134 176 387
Base content (%) 43.7% 56.3%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.85%)
Alanine (Ala, A)
n = 17 (7.49%)
Serine (Ser, S)
n = 13 (5.73%)
Threonine (Thr, T)
n = 21 (9.25%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 12 (5.29%)
Leucine (Leu, L)
n = 52 (22.91%)
Isoleucine (Ile, I)
n = 18 (7.93%)
Methionine (Met, M)
n = 12 (5.29%)
Proline (Pro, P)
n = 16 (7.05%)
Phenylalanine (Phe, F)
n = 11 (4.85%)
Tyrosine (Tyr, Y)
n = 6 (2.64%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 8 (3.52%)
Glutamine (Gln, Q)
n = 10 (4.41%)
Histidine (His, H)
n = 3 (1.32%)
Lysine (Lys, K)
n = 1 (0.44%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 6 10 9 11 17 7 8 10 0 4 4 1 3 7 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 3 7 6 1 0 2 7 2 4 5 6 1 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 6 1 2 1 4 0 0 6 3 3 3 0 2 6 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 4 0 0 1 0 1 1 1 4 0 0 0 1 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
45 79 66 38
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
28 61 34 105
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
21 65 86 56
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPAPWFAILVFSWTVFLAILPPKVMAHSYPNEPAPQNTQKPEMNSWSWPWY*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 5 (9.09%)
Serine (Ser, S)
n = 4 (7.27%)
Threonine (Thr, T)
n = 2 (3.64%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 3 (5.45%)
Leucine (Leu, L)
n = 4 (7.27%)
Isoleucine (Ile, I)
n = 2 (3.64%)
Methionine (Met, M)
n = 3 (5.45%)
Proline (Pro, P)
n = 10 (18.18%)
Phenylalanine (Phe, F)
n = 3 (5.45%)
Tyrosine (Tyr, Y)
n = 2 (3.64%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 2 (3.64%)
Asparagine (Asn, N)
n = 4 (7.27%)
Glutamine (Gln, Q)
n = 3 (5.45%)
Histidine (His, H)
n = 1 (1.82%)
Lysine (Lys, K)
n = 2 (3.64%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 1 1 2 0 1 1 0 1 2 0 1 2 0 0 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 0 2 3 0 0 0 0 0 5 2 3 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 2 0 2 2 0 0 0 0 1 1 1 0 2 2 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 1 1 0 0 2 0 0 0 0 0 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
10 18 13 15
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
5 21 15 15
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
7 14 21 14
COX1 (size: 1551 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 46 (8.91%)
Alanine (Ala, A)
n = 49 (9.5%)
Serine (Ser, S)
n = 27 (5.23%)
Threonine (Thr, T)
n = 37 (7.17%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 40 (7.75%)
Leucine (Leu, L)
n = 63 (12.21%)
Isoleucine (Ile, I)
n = 40 (7.75%)
Methionine (Met, M)
n = 23 (4.46%)
Proline (Pro, P)
n = 28 (5.43%)
Phenylalanine (Phe, F)
n = 42 (8.14%)
Tyrosine (Tyr, Y)
n = 18 (3.49%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 15 (2.91%)
Glutamic acid (Glu, E)
n = 10 (1.94%)
Asparagine (Asn, N)
n = 14 (2.71%)
Glutamine (Gln, Q)
n = 9 (1.74%)
Histidine (His, H)
n = 20 (3.88%)
Lysine (Lys, K)
n = 9 (1.74%)
Arginine (Arg, R)
n = 8 (1.55%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
31 9 10 18 10 14 3 16 7 2 16 6 15 3 20 22
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
13 0 1 13 11 24 1 6 13 16 11 10 9 8 1 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 18 2 10 5 6 2 2 2 6 12 1 2 5 9 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
18 6 4 4 11 8 1 1 0 7 0 0 0 1 0 16
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
160 110 127 120
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
76 137 96 208
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
46 148 172 151
COX2 (size: 691 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.93%)
Alanine (Ala, A)
n = 15 (6.55%)
Serine (Ser, S)
n = 17 (7.42%)
Threonine (Thr, T)
n = 12 (5.24%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 21 (9.17%)
Leucine (Leu, L)
n = 30 (13.1%)
Isoleucine (Ile, I)
n = 17 (7.42%)
Methionine (Met, M)
n = 12 (5.24%)
Proline (Pro, P)
n = 13 (5.68%)
Phenylalanine (Phe, F)
n = 7 (3.06%)
Tyrosine (Tyr, Y)
n = 10 (4.37%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 15 (6.55%)
Glutamic acid (Glu, E)
n = 12 (5.24%)
Asparagine (Asn, N)
n = 4 (1.75%)
Glutamine (Gln, Q)
n = 9 (3.93%)
Histidine (His, H)
n = 10 (4.37%)
Lysine (Lys, K)
n = 4 (1.75%)
Arginine (Arg, R)
n = 6 (2.62%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 6 9 5 7 5 3 10 9 0 12 3 5 1 2 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 2 0 5 3 7 0 2 5 2 0 2 6 3 2 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 5 0 4 5 3 2 1 2 5 5 0 0 2 2 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 10 2 5 10 4 0 1 1 4 0 0 0 0 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
72 58 52 48
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 54 64 87
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
13 71 81 65
COX3 (size: 785 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 23 (8.85%)
Alanine (Ala, A)
n = 21 (8.08%)
Serine (Ser, S)
n = 13 (5.0%)
Threonine (Thr, T)
n = 24 (9.23%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 20 (7.69%)
Leucine (Leu, L)
n = 30 (11.54%)
Isoleucine (Ile, I)
n = 12 (4.62%)
Methionine (Met, M)
n = 9 (3.46%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 23 (8.85%)
Tyrosine (Tyr, Y)
n = 12 (4.62%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 9 (3.46%)
Asparagine (Asn, N)
n = 2 (0.77%)
Glutamine (Gln, Q)
n = 8 (3.08%)
Histidine (His, H)
n = 16 (6.15%)
Lysine (Lys, K)
n = 3 (1.15%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 2 7 7 6 9 2 5 6 2 5 5 8 2 8 15
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 1 5 5 10 1 1 7 11 4 3 6 3 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 9 1 4 3 3 0 1 2 2 10 0 1 1 1 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 8 1 2 3 2 1 1 1 3 0 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
78 65 53 65
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
45 67 55 94
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
17 88 96 60
CYTB (size: 1141 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (6.86%)
Alanine (Ala, A)
n = 33 (8.71%)
Serine (Ser, S)
n = 24 (6.33%)
Threonine (Thr, T)
n = 21 (5.54%)
Cysteine (Cys, C)
n = 4 (1.06%)
Valine (Val, V)
n = 29 (7.65%)
Leucine (Leu, L)
n = 58 (15.3%)
Isoleucine (Ile, I)
n = 27 (7.12%)
Methionine (Met, M)
n = 13 (3.43%)
Proline (Pro, P)
n = 21 (5.54%)
Phenylalanine (Phe, F)
n = 30 (7.92%)
Tyrosine (Tyr, Y)
n = 15 (3.96%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 12 (3.17%)
Glutamic acid (Glu, E)
n = 5 (1.32%)
Asparagine (Asn, N)
n = 17 (4.49%)
Glutamine (Gln, Q)
n = 6 (1.58%)
Histidine (His, H)
n = 11 (2.9%)
Lysine (Lys, K)
n = 8 (2.11%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 10 7 11 16 21 1 8 6 0 5 8 14 2 8 22
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 2 2 7 13 11 2 1 11 9 5 6 9 6 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 11 1 11 4 7 0 0 2 4 11 1 1 6 11 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 5 0 4 8 6 2 0 1 6 1 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
105 95 88 92
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
52 97 74 157
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
22 144 128 86
ND1 (size: 975 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.56%)
Alanine (Ala, A)
n = 33 (10.19%)
Serine (Ser, S)
n = 20 (6.17%)
Threonine (Thr, T)
n = 17 (5.25%)
Cysteine (Cys, C)
n = 2 (0.62%)
Valine (Val, V)
n = 21 (6.48%)
Leucine (Leu, L)
n = 63 (19.44%)
Isoleucine (Ile, I)
n = 25 (7.72%)
Methionine (Met, M)
n = 10 (3.09%)
Proline (Pro, P)
n = 24 (7.41%)
Phenylalanine (Phe, F)
n = 18 (5.56%)
Tyrosine (Tyr, Y)
n = 12 (3.7%)
Tryptophan (Trp, W)
n = 9 (2.78%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.4%)
Asparagine (Asn, N)
n = 11 (3.4%)
Glutamine (Gln, Q)
n = 7 (2.16%)
Histidine (His, H)
n = 4 (1.23%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 8 9 13 14 17 7 10 7 0 8 3 9 1 8 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 2 6 13 13 1 2 10 5 1 5 9 8 2 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 3 2 6 5 4 2 1 2 8 4 0 2 7 4 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 11 0 0 4 5 2 1 1 3 3 0 0 1 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
87 94 73 71
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
40 91 57 137
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
24 100 114 87
ND2 (size: 1049 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (5.46%)
Alanine (Ala, A)
n = 35 (10.06%)
Serine (Ser, S)
n = 20 (5.75%)
Threonine (Thr, T)
n = 42 (12.07%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 8 (2.3%)
Leucine (Leu, L)
n = 73 (20.98%)
Isoleucine (Ile, I)
n = 31 (8.91%)
Methionine (Met, M)
n = 16 (4.6%)
Proline (Pro, P)
n = 22 (6.32%)
Phenylalanine (Phe, F)
n = 9 (2.59%)
Tyrosine (Tyr, Y)
n = 11 (3.16%)
Tryptophan (Trp, W)
n = 12 (3.45%)
Aspartic acid (Asp, D)
n = 3 (0.86%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 10 (2.87%)
Glutamine (Gln, Q)
n = 14 (4.02%)
Histidine (His, H)
n = 7 (2.01%)
Lysine (Lys, K)
n = 8 (2.3%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
18 13 14 16 17 20 3 16 12 2 2 2 3 1 4 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 9 13 12 1 1 8 8 2 7 6 7 2 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
16 15 1 3 6 5 0 1 5 8 3 1 1 4 6 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 3 2 2 1 5 3 0 1 2 1 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
70 103 113 63
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
41 113 58 137
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
22 107 133 87
ND3 (size: 1049 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (5.46%)
Alanine (Ala, A)
n = 35 (10.06%)
Serine (Ser, S)
n = 20 (5.75%)
Threonine (Thr, T)
n = 42 (12.07%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 8 (2.3%)
Leucine (Leu, L)
n = 73 (20.98%)
Isoleucine (Ile, I)
n = 31 (8.91%)
Methionine (Met, M)
n = 16 (4.6%)
Proline (Pro, P)
n = 22 (6.32%)
Phenylalanine (Phe, F)
n = 9 (2.59%)
Tyrosine (Tyr, Y)
n = 11 (3.16%)
Tryptophan (Trp, W)
n = 12 (3.45%)
Aspartic acid (Asp, D)
n = 3 (0.86%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 10 (2.87%)
Glutamine (Gln, Q)
n = 14 (4.02%)
Histidine (His, H)
n = 7 (2.01%)
Lysine (Lys, K)
n = 8 (2.3%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
18 13 14 16 17 20 3 16 12 2 2 2 3 1 4 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 9 13 12 1 1 8 8 2 7 6 7 2 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
16 15 1 3 6 5 0 1 5 8 3 1 1 4 6 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 3 2 2 1 5 3 0 1 2 1 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
70 103 113 63
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
41 113 58 137
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
22 107 133 87
ND4 (size: 1378 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (5.68%)
Alanine (Ala, A)
n = 43 (9.39%)
Serine (Ser, S)
n = 26 (5.68%)
Threonine (Thr, T)
n = 34 (7.42%)
Cysteine (Cys, C)
n = 8 (1.75%)
Valine (Val, V)
n = 27 (5.9%)
Leucine (Leu, L)
n = 82 (17.9%)
Isoleucine (Ile, I)
n = 36 (7.86%)
Methionine (Met, M)
n = 31 (6.77%)
Proline (Pro, P)
n = 26 (5.68%)
Phenylalanine (Phe, F)
n = 19 (4.15%)
Tyrosine (Tyr, Y)
n = 14 (3.06%)
Tryptophan (Trp, W)
n = 19 (4.15%)
Aspartic acid (Asp, D)
n = 5 (1.09%)
Glutamic acid (Glu, E)
n = 9 (1.97%)
Asparagine (Asn, N)
n = 9 (1.97%)
Glutamine (Gln, Q)
n = 11 (2.4%)
Histidine (His, H)
n = 14 (3.06%)
Lysine (Lys, K)
n = 9 (1.97%)
Arginine (Arg, R)
n = 11 (2.4%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
24 12 25 20 18 25 5 11 11 0 11 5 7 4 13 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 3 5 11 16 16 0 4 9 8 5 7 12 6 1 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 13 2 10 6 3 0 2 5 5 9 2 3 1 8 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 8 1 3 2 8 1 1 3 4 3 0 0 0 0 17
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
110 130 126 93
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
71 122 71 195
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
33 135 162 129
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 7 (7.14%)
Alanine (Ala, A)
n = 13 (13.27%)
Serine (Ser, S)
n = 11 (11.22%)
Threonine (Thr, T)
n = 8 (8.16%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 2 (2.04%)
Leucine (Leu, L)
n = 24 (24.49%)
Isoleucine (Ile, I)
n = 3 (3.06%)
Methionine (Met, M)
n = 3 (3.06%)
Proline (Pro, P)
n = 1 (1.02%)
Phenylalanine (Phe, F)
n = 7 (7.14%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 2 (2.04%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 1 (1.02%)
Arginine (Arg, R)
n = 3 (3.06%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 2 0 5 6 7 0 6 2 0 0 1 1 0 1 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 2 1 4 3 4 2 1 3 2 1 0 1 0 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 5 0 0 4 3 1 1 2 0 0 0 0 0 2 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 2 0 0 1 1 0 0 0 2 1 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
25 28 20 26
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
17 30 13 39
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
8 37 37 17
ND5 (size: 1839 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 32 (5.23%)
Alanine (Ala, A)
n = 56 (9.15%)
Serine (Ser, S)
n = 42 (6.86%)
Threonine (Thr, T)
n = 54 (8.82%)
Cysteine (Cys, C)
n = 6 (0.98%)
Valine (Val, V)
n = 32 (5.23%)
Leucine (Leu, L)
n = 93 (15.2%)
Isoleucine (Ile, I)
n = 49 (8.01%)
Methionine (Met, M)
n = 34 (5.56%)
Proline (Pro, P)
n = 32 (5.23%)
Phenylalanine (Phe, F)
n = 41 (6.7%)
Tyrosine (Tyr, Y)
n = 14 (2.29%)
Tryptophan (Trp, W)
n = 14 (2.29%)
Aspartic acid (Asp, D)
n = 12 (1.96%)
Glutamic acid (Glu, E)
n = 13 (2.12%)
Asparagine (Asn, N)
n = 27 (4.41%)
Glutamine (Gln, Q)
n = 15 (2.45%)
Histidine (His, H)
n = 13 (2.12%)
Lysine (Lys, K)
n = 21 (3.43%)
Arginine (Arg, R)
n = 12 (1.96%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
30 19 27 21 19 20 5 25 15 0 6 9 16 1 19 22
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 4 2 14 22 19 1 1 16 12 3 7 16 8 1 11
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
20 21 2 6 12 13 0 4 7 5 9 2 3 15 12 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 11 2 5 7 20 1 1 2 9 0 0 0 1 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
145 137 196 135
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
75 173 116 249
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
28 204 229 152
ND6 (size: 522 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (13.87%)
Alanine (Ala, A)
n = 19 (10.98%)
Serine (Ser, S)
n = 12 (6.94%)
Threonine (Thr, T)
n = 4 (2.31%)
Cysteine (Cys, C)
n = 3 (1.73%)
Valine (Val, V)
n = 17 (9.83%)
Leucine (Leu, L)
n = 32 (18.5%)
Isoleucine (Ile, I)
n = 9 (5.2%)
Methionine (Met, M)
n = 7 (4.05%)
Proline (Pro, P)
n = 5 (2.89%)
Phenylalanine (Phe, F)
n = 10 (5.78%)
Tyrosine (Tyr, Y)
n = 9 (5.2%)
Tryptophan (Trp, W)
n = 3 (1.73%)
Aspartic acid (Asp, D)
n = 2 (1.16%)
Glutamic acid (Glu, E)
n = 7 (4.05%)
Asparagine (Asn, N)
n = 2 (1.16%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 2 (1.16%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 6 (3.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 0 2 4 1 0 2 19 0 0 9 1 6 1 8 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 3 0 10 1 3 5 5 0 5 14 3 0 1 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 1 0 2 2 1 1 4 2 4 5 1 6 1 1 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 1 6 2 0 0 0 2 0 0 4 0 0 0 1 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
69 20 28 57
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
42 34 23 75
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
47 16 41 70
Total protein-coding genes (size: 11429 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 247 (6.49%)
Alanine (Ala, A)
n = 346 (9.09%)
Serine (Ser, S)
n = 235 (6.17%)
Threonine (Thr, T)
n = 286 (7.51%)
Cysteine (Cys, C)
n = 32 (0.84%)
Valine (Val, V)
n = 237 (6.23%)
Leucine (Leu, L)
n = 627 (16.47%)
Isoleucine (Ile, I)
n = 280 (7.36%)
Methionine (Met, M)
n = 177 (4.65%)
Proline (Pro, P)
n = 218 (5.73%)
Phenylalanine (Phe, F)
n = 229 (6.02%)
Tyrosine (Tyr, Y)
n = 125 (3.28%)
Tryptophan (Trp, W)
n = 119 (3.13%)
Aspartic acid (Asp, D)
n = 78 (2.05%)
Glutamic acid (Glu, E)
n = 96 (2.52%)
Asparagine (Asn, N)
n = 112 (2.94%)
Glutamine (Gln, Q)
n = 97 (2.55%)
Histidine (His, H)
n = 106 (2.79%)
Lysine (Lys, K)
n = 74 (1.94%)
Arginine (Arg, R)
n = 79 (2.08%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
187 93 122 134 131 162 42 138 89 8 79 50 89 19 102 127
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
55 18 14 88 112 128 18 25 85 87 50 65 82 60 11 61
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
100 112 13 61 58 54 8 17 37 52 73 13 20 46 66 31
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
75 77 19 29 49 62 12 9 11 46 13 0 0 6 1 106
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
1004 969 983 851
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
531 1031 695 1550
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
302 1163 1338 1004 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​N​e​m​i​p​t​e​r​u​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ j​a​p​o​n​i​c​u​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.