Viewing data for Grus japonensis


Scientific name Grus japonensis
Common name Manchurian crane
Maximum lifespan 25.20 years (Grus japonensis@AnAge)

Total mtDNA (size: 16715 bases) GC AT G C A T
Base content (bases) 7472 9243 5205 2267 3996 5247
Base content per 1 kb (bases) 447 553 311 136 239 314
Base content (%) 44.7% 55.3%
Total protein-coding genes (size: 11361 bases) GC AT G C A T
Base content (bases) 5127 6234 3773 1354 2733 3501
Base content per 1 kb (bases) 451 549 332 119 241 308
Base content (%) 45.1% 54.9%
D-loop: No data available for this section.
Total tRNA-coding genes (size: 1550 bases) GC AT G C A T
Base content (bases) 650 900 389 261 388 512
Base content per 1 kb (bases) 419 581 251 168 250 330
Base content (%) 41.9% 58.1%
Total rRNA-coding genes (size: 2566 bases) GC AT G C A T
Base content (bases) 1179 1387 693 486 535 852
Base content per 1 kb (bases) 459 541 270 189 208 332
Base content (%) 45.9% 54.1%
12S rRNA gene (size: 971 bases) GC AT G C A T
Base content (bases) 466 505 276 190 193 312
Base content per 1 kb (bases) 480 520 284 196 199 321
Base content (%) 48.0% 52.0%
16S rRNA gene (size: 1595 bases) GC AT G C A T
Base content (bases) 713 882 417 296 342 540
Base content per 1 kb (bases) 447 553 261 186 214 339
Base content (%) 44.7% 55.3%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 297 387 235 62 175 212
Base content per 1 kb (bases) 434 566 344 91 256 310
Base content (%) 43.4% 56.6%
ATP8 (size: 174 bases) GC AT G C A T
Base content (bases) 79 95 67 12 40 55
Base content per 1 kb (bases) 454 546 385 69 230 316
Base content (%) 45.4% 54.6%
COX1 (size: 1551 bases) GC AT G C A T
Base content (bases) 729 822 480 249 387 435
Base content per 1 kb (bases) 470 530 309 161 250 280
Base content (%) 47.0% 53.0%
COX2 (size: 684 bases) GC AT G C A T
Base content (bases) 312 372 213 99 165 207
Base content per 1 kb (bases) 456 544 311 145 241 303
Base content (%) 45.6% 54.4%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 365 419 244 121 200 219
Base content per 1 kb (bases) 466 534 311 154 255 279
Base content (%) 46.6% 53.4%
CYTB (size: 1143 bases) GC AT G C A T
Base content (bases) 537 606 393 144 290 316
Base content per 1 kb (bases) 470 530 344 126 254 276
Base content (%) 47.0% 53.0%
ND1 (size: 966 bases) GC AT G C A T
Base content (bases) 436 530 316 120 254 276
Base content per 1 kb (bases) 451 549 327 124 263 286
Base content (%) 45.1% 54.9%
ND2 (size: 1039 bases) GC AT G C A T
Base content (bases) 429 610 327 102 269 341
Base content per 1 kb (bases) 413 587 315 98 259 328
Base content (%) 41.3% 58.7%
ND3 (size: 352 bases) GC AT G C A T
Base content (bases) 154 198 118 36 92 106
Base content per 1 kb (bases) 438 563 335 102 261 301
Base content (%) 43.8% 56.3%
ND4 (size: 1368 bases) GC AT G C A T
Base content (bases) 605 763 475 130 319 444
Base content per 1 kb (bases) 442 558 347 95 233 325
Base content (%) 44.2% 55.8%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 128 169 92 36 75 94
Base content per 1 kb (bases) 431 569 310 121 253 316
Base content (%) 43.1% 56.9%
ND5 (size: 1815 bases) GC AT G C A T
Base content (bases) 813 1002 616 197 408 594
Base content per 1 kb (bases) 448 552 339 109 225 327
Base content (%) 44.8% 55.2%
ND6 (size: 522 bases) GC AT G C A T
Base content (bases) 247 275 199 48 64 211
Base content per 1 kb (bases) 473 527 381 92 123 404
Base content (%) 47.3% 52.7%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 14 (6.17%)
Serine (Ser, S)
n = 15 (6.61%)
Threonine (Thr, T)
n = 25 (11.01%)
Cysteine (Cys, C)
n = 1 (0.44%)
Valine (Val, V)
n = 6 (2.64%)
Leucine (Leu, L)
n = 60 (26.43%)
Isoleucine (Ile, I)
n = 20 (8.81%)
Methionine (Met, M)
n = 9 (3.96%)
Proline (Pro, P)
n = 17 (7.49%)
Phenylalanine (Phe, F)
n = 9 (3.96%)
Tyrosine (Tyr, Y)
n = 3 (1.32%)
Tryptophan (Trp, W)
n = 4 (1.76%)
Aspartic acid (Asp, D)
n = 2 (0.88%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 9 (3.96%)
Glutamine (Gln, Q)
n = 8 (3.52%)
Histidine (His, H)
n = 4 (1.76%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 5 (2.2%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 13 6 7 13 27 3 10 8 0 1 2 3 0 2 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 1 5 5 4 0 0 3 5 0 0 6 11 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 11 0 0 4 7 0 0 4 0 3 0 0 2 7 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 4 0 0 2 4 0 1 3 1 0 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
34 84 71 39
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
22 67 35 104
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
6 84 106 32
ATP8 (size: 174 bases)
Amino acid sequence: MPQLNPSPWFFIMLTSWLTFSLILQPKLLSFTPTNSLPNLPTPATTTKTTPWTWPWT*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 1 (1.75%)
Serine (Ser, S)
n = 5 (8.77%)
Threonine (Thr, T)
n = 12 (21.05%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 0 (0%)
Leucine (Leu, L)
n = 9 (15.79%)
Isoleucine (Ile, I)
n = 2 (3.51%)
Methionine (Met, M)
n = 2 (3.51%)
Proline (Pro, P)
n = 10 (17.54%)
Phenylalanine (Phe, F)
n = 4 (7.02%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (8.77%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 0 (0%)
Asparagine (Asn, N)
n = 3 (5.26%)
Glutamine (Gln, Q)
n = 2 (3.51%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 2 (3.51%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 1 1 3 0 4 2 0 2 0 0 0 0 0 1 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 0 1 0 0 0 0 0 0 1 4 5 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 2 2 0 1 3 0 0 1 0 0 0 0 1 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 0 0 0 0 2 0 0 0 0 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
1 21 22 14
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
6 27 8 17
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
5 19 25 9
COX1 (size: 1551 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.11%)
Alanine (Ala, A)
n = 45 (8.72%)
Serine (Ser, S)
n = 26 (5.04%)
Threonine (Thr, T)
n = 42 (8.14%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 34 (6.59%)
Leucine (Leu, L)
n = 62 (12.02%)
Isoleucine (Ile, I)
n = 41 (7.95%)
Methionine (Met, M)
n = 25 (4.84%)
Proline (Pro, P)
n = 31 (6.01%)
Phenylalanine (Phe, F)
n = 43 (8.33%)
Tyrosine (Tyr, Y)
n = 17 (3.29%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 15 (2.91%)
Glutamic acid (Glu, E)
n = 10 (1.94%)
Asparagine (Asn, N)
n = 15 (2.91%)
Glutamine (Gln, Q)
n = 9 (1.74%)
Histidine (His, H)
n = 19 (3.68%)
Lysine (Lys, K)
n = 9 (1.74%)
Arginine (Arg, R)
n = 8 (1.55%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 27 20 5 12 33 5 7 8 1 1 14 16 3 7 36
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 1 11 22 12 0 5 17 21 4 3 6 21 1 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
20 16 0 4 9 10 0 0 3 7 10 0 0 5 10 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
16 9 1 2 13 9 0 1 1 6 0 0 1 0 0 17
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
151 122 136 108
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
77 141 94 205
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
21 217 205 74
COX2 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 14 (6.17%)
Serine (Ser, S)
n = 19 (8.37%)
Threonine (Thr, T)
n = 17 (7.49%)
Cysteine (Cys, C)
n = 3 (1.32%)
Valine (Val, V)
n = 14 (6.17%)
Leucine (Leu, L)
n = 31 (13.66%)
Isoleucine (Ile, I)
n = 19 (8.37%)
Methionine (Met, M)
n = 10 (4.41%)
Proline (Pro, P)
n = 13 (5.73%)
Phenylalanine (Phe, F)
n = 9 (3.96%)
Tyrosine (Tyr, Y)
n = 8 (3.52%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 13 (5.73%)
Glutamic acid (Glu, E)
n = 15 (6.61%)
Asparagine (Asn, N)
n = 4 (1.76%)
Glutamine (Gln, Q)
n = 7 (3.08%)
Histidine (His, H)
n = 9 (3.96%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 5 (2.2%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
6 13 8 2 10 15 1 3 6 1 4 6 4 0 3 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 2 6 2 5 1 0 2 3 3 3 4 6 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 7 0 0 9 7 0 1 2 2 6 0 0 2 2 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 14 1 4 9 4 0 0 2 1 2 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
64 62 57 45
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
24 60 61 83
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
11 91 89 37
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 20 (7.69%)
Alanine (Ala, A)
n = 22 (8.46%)
Serine (Ser, S)
n = 20 (7.69%)
Threonine (Thr, T)
n = 17 (6.54%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 13 (5.0%)
Leucine (Leu, L)
n = 31 (11.92%)
Isoleucine (Ile, I)
n = 20 (7.69%)
Methionine (Met, M)
n = 8 (3.08%)
Proline (Pro, P)
n = 13 (5.0%)
Phenylalanine (Phe, F)
n = 24 (9.23%)
Tyrosine (Tyr, Y)
n = 8 (3.08%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 4 (1.54%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 5 (1.92%)
Glutamine (Gln, Q)
n = 8 (3.08%)
Histidine (His, H)
n = 19 (7.31%)
Lysine (Lys, K)
n = 3 (1.15%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 15 6 3 5 16 1 5 6 2 0 6 7 0 4 20
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 1 5 8 9 0 1 7 12 0 5 3 5 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 9 0 1 6 7 1 1 4 3 5 1 1 1 4 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
15 5 3 2 2 3 0 0 0 5 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
67 70 58 66
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 67 55 96
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
11 107 106 37
CYTB (size: 1143 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (6.58%)
Alanine (Ala, A)
n = 26 (6.84%)
Serine (Ser, S)
n = 23 (6.05%)
Threonine (Thr, T)
n = 29 (7.63%)
Cysteine (Cys, C)
n = 4 (1.05%)
Valine (Val, V)
n = 16 (4.21%)
Leucine (Leu, L)
n = 69 (18.16%)
Isoleucine (Ile, I)
n = 28 (7.37%)
Methionine (Met, M)
n = 11 (2.89%)
Proline (Pro, P)
n = 25 (6.58%)
Phenylalanine (Phe, F)
n = 27 (7.11%)
Tyrosine (Tyr, Y)
n = 15 (3.95%)
Tryptophan (Trp, W)
n = 11 (2.89%)
Aspartic acid (Asp, D)
n = 6 (1.58%)
Glutamic acid (Glu, E)
n = 7 (1.84%)
Asparagine (Asn, N)
n = 20 (5.26%)
Glutamine (Gln, Q)
n = 8 (2.11%)
Histidine (His, H)
n = 12 (3.16%)
Lysine (Lys, K)
n = 10 (2.63%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 24 9 3 24 30 2 8 7 1 4 4 8 0 7 20
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 3 7 13 6 0 2 12 9 2 1 10 12 2 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
15 10 0 2 10 9 1 0 1 2 13 1 2 1 19 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 6 1 3 3 9 1 2 2 4 0 0 0 1 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
80 112 99 90
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
49 102 79 151
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 179 138 49
ND1 (size: 966 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.36%)
Alanine (Ala, A)
n = 27 (8.41%)
Serine (Ser, S)
n = 28 (8.72%)
Threonine (Thr, T)
n = 23 (7.17%)
Cysteine (Cys, C)
n = 1 (0.31%)
Valine (Val, V)
n = 11 (3.43%)
Leucine (Leu, L)
n = 61 (19.0%)
Isoleucine (Ile, I)
n = 27 (8.41%)
Methionine (Met, M)
n = 15 (4.67%)
Proline (Pro, P)
n = 25 (7.79%)
Phenylalanine (Phe, F)
n = 17 (5.3%)
Tyrosine (Tyr, Y)
n = 15 (4.67%)
Tryptophan (Trp, W)
n = 8 (2.49%)
Aspartic acid (Asp, D)
n = 4 (1.25%)
Glutamic acid (Glu, E)
n = 11 (3.43%)
Asparagine (Asn, N)
n = 11 (3.43%)
Glutamine (Gln, Q)
n = 5 (1.56%)
Histidine (His, H)
n = 3 (0.93%)
Lysine (Lys, K)
n = 7 (2.18%)
Arginine (Arg, R)
n = 8 (2.49%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 20 13 8 15 28 3 6 5 0 3 1 7 0 2 15
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 0 7 7 13 0 2 9 1 2 6 6 12 1 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 11 0 4 10 8 0 1 5 6 9 2 1 2 9 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 10 1 1 3 7 0 1 2 3 2 0 1 0 0 6
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
67 95 90 70
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
38 97 56 131
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 124 130 53
ND2 (size: 1039 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.06%)
Alanine (Ala, A)
n = 24 (6.96%)
Serine (Ser, S)
n = 31 (8.99%)
Threonine (Thr, T)
n = 44 (12.75%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 9 (2.61%)
Leucine (Leu, L)
n = 65 (18.84%)
Isoleucine (Ile, I)
n = 35 (10.14%)
Methionine (Met, M)
n = 17 (4.93%)
Proline (Pro, P)
n = 19 (5.51%)
Phenylalanine (Phe, F)
n = 15 (4.35%)
Tyrosine (Tyr, Y)
n = 7 (2.03%)
Tryptophan (Trp, W)
n = 10 (2.9%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 6 (1.74%)
Asparagine (Asn, N)
n = 12 (3.48%)
Glutamine (Gln, Q)
n = 10 (2.9%)
Histidine (His, H)
n = 9 (2.61%)
Lysine (Lys, K)
n = 13 (3.77%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 24 16 7 16 26 3 13 7 3 1 2 6 0 4 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 1 4 7 13 0 1 8 3 2 2 9 7 1 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
16 22 1 4 6 16 1 2 2 2 5 2 0 6 6 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 6 0 1 1 13 0 0 1 1 1 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
55 93 125 73
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
32 114 59 141
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 120 157 54
ND3 (size: 1039 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.06%)
Alanine (Ala, A)
n = 24 (6.96%)
Serine (Ser, S)
n = 31 (8.99%)
Threonine (Thr, T)
n = 44 (12.75%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 9 (2.61%)
Leucine (Leu, L)
n = 65 (18.84%)
Isoleucine (Ile, I)
n = 35 (10.14%)
Methionine (Met, M)
n = 17 (4.93%)
Proline (Pro, P)
n = 19 (5.51%)
Phenylalanine (Phe, F)
n = 15 (4.35%)
Tyrosine (Tyr, Y)
n = 7 (2.03%)
Tryptophan (Trp, W)
n = 10 (2.9%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 6 (1.74%)
Asparagine (Asn, N)
n = 12 (3.48%)
Glutamine (Gln, Q)
n = 10 (2.9%)
Histidine (His, H)
n = 9 (2.61%)
Lysine (Lys, K)
n = 13 (3.77%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 24 16 7 16 26 3 13 7 3 1 2 6 0 4 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 1 4 7 13 0 1 8 3 2 2 9 7 1 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
16 22 1 4 6 16 1 2 2 2 5 2 0 6 6 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 6 0 1 1 13 0 0 1 1 1 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
55 93 125 73
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
32 114 59 141
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 120 157 54
ND4 (size: 1368 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (3.96%)
Alanine (Ala, A)
n = 30 (6.59%)
Serine (Ser, S)
n = 33 (7.25%)
Threonine (Thr, T)
n = 55 (12.09%)
Cysteine (Cys, C)
n = 3 (0.66%)
Valine (Val, V)
n = 5 (1.1%)
Leucine (Leu, L)
n = 99 (21.76%)
Isoleucine (Ile, I)
n = 42 (9.23%)
Methionine (Met, M)
n = 24 (5.27%)
Proline (Pro, P)
n = 27 (5.93%)
Phenylalanine (Phe, F)
n = 16 (3.52%)
Tyrosine (Tyr, Y)
n = 10 (2.2%)
Tryptophan (Trp, W)
n = 12 (2.64%)
Aspartic acid (Asp, D)
n = 2 (0.44%)
Glutamic acid (Glu, E)
n = 11 (2.42%)
Asparagine (Asn, N)
n = 14 (3.08%)
Glutamine (Gln, Q)
n = 15 (3.3%)
Histidine (His, H)
n = 19 (4.18%)
Lysine (Lys, K)
n = 9 (1.98%)
Arginine (Arg, R)
n = 11 (2.42%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 34 22 4 27 55 1 11 15 0 1 1 3 0 5 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 2 4 11 15 0 4 8 4 2 1 9 17 0 11
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
23 21 0 5 8 11 0 1 8 3 7 1 1 1 13 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
15 8 3 1 1 9 0 2 2 7 0 1 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
66 159 154 77
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
54 136 80 186
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
10 180 210 56
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 10 (10.2%)
Serine (Ser, S)
n = 14 (14.29%)
Threonine (Thr, T)
n = 6 (6.12%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 3 (3.06%)
Leucine (Leu, L)
n = 19 (19.39%)
Isoleucine (Ile, I)
n = 3 (3.06%)
Methionine (Met, M)
n = 8 (8.16%)
Proline (Pro, P)
n = 3 (3.06%)
Phenylalanine (Phe, F)
n = 5 (5.1%)
Tyrosine (Tyr, Y)
n = 2 (2.04%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 3 (3.06%)
Asparagine (Asn, N)
n = 3 (3.06%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 6 (6.12%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 2 (2.04%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
0 3 7 1 0 14 0 4 2 0 0 1 2 0 1 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 2 1 2 3 5 0 1 2 1 0 1 1 1 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 3 0 1 3 6 0 1 3 0 2 0 0 1 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 3 0 0 1 0 0 0 0 2 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
21 28 24 26
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
14 29 18 38
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
1 35 52 11
ND5 (size: 1815 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 32 (5.3%)
Alanine (Ala, A)
n = 48 (7.95%)
Serine (Ser, S)
n = 45 (7.45%)
Threonine (Thr, T)
n = 76 (12.58%)
Cysteine (Cys, C)
n = 5 (0.83%)
Valine (Val, V)
n = 11 (1.82%)
Leucine (Leu, L)
n = 102 (16.89%)
Isoleucine (Ile, I)
n = 54 (8.94%)
Methionine (Met, M)
n = 35 (5.79%)
Proline (Pro, P)
n = 28 (4.64%)
Phenylalanine (Phe, F)
n = 30 (4.97%)
Tyrosine (Tyr, Y)
n = 13 (2.15%)
Tryptophan (Trp, W)
n = 12 (1.99%)
Aspartic acid (Asp, D)
n = 7 (1.16%)
Glutamic acid (Glu, E)
n = 13 (2.15%)
Asparagine (Asn, N)
n = 27 (4.47%)
Glutamine (Gln, Q)
n = 20 (3.31%)
Histidine (His, H)
n = 15 (2.48%)
Lysine (Lys, K)
n = 23 (3.81%)
Arginine (Arg, R)
n = 8 (1.32%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 39 32 9 29 48 3 11 16 4 2 5 4 0 6 24
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 2 3 7 29 10 2 3 12 13 4 1 9 18 0 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
33 36 0 3 20 13 0 1 8 2 11 2 2 6 21 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 13 0 0 7 23 0 0 5 3 0 0 0 1 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
111 160 224 110
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
66 188 119 232
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
20 268 251 66
ND6 (size: 522 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 27 (15.61%)
Alanine (Ala, A)
n = 11 (6.36%)
Serine (Ser, S)
n = 13 (7.51%)
Threonine (Thr, T)
n = 3 (1.73%)
Cysteine (Cys, C)
n = 3 (1.73%)
Valine (Val, V)
n = 32 (18.5%)
Leucine (Leu, L)
n = 27 (15.61%)
Isoleucine (Ile, I)
n = 4 (2.31%)
Methionine (Met, M)
n = 8 (4.62%)
Proline (Pro, P)
n = 4 (2.31%)
Phenylalanine (Phe, F)
n = 11 (6.36%)
Tyrosine (Tyr, Y)
n = 8 (4.62%)
Tryptophan (Trp, W)
n = 6 (3.47%)
Aspartic acid (Asp, D)
n = 5 (2.89%)
Glutamic acid (Glu, E)
n = 3 (1.73%)
Asparagine (Asn, N)
n = 2 (1.16%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 6 (3.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 0 1 5 0 0 2 1 0 0 12 0 9 11 11 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 3 0 2 0 5 4 4 0 3 20 2 0 0 2 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 0 0 6 1 1 2 3 0 6 2 3 19 2 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 1 2 5 0 0 0 2 0 1 3 0 0 0 1 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
78 17 20 59
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
45 28 19 82
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
76 3 25 70
Total protein-coding genes (size: 11378 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 222 (5.86%)
Alanine (Ala, A)
n = 277 (7.31%)
Serine (Ser, S)
n = 280 (7.39%)
Threonine (Thr, T)
n = 362 (9.55%)
Cysteine (Cys, C)
n = 27 (0.71%)
Valine (Val, V)
n = 155 (4.09%)
Leucine (Leu, L)
n = 662 (17.46%)
Isoleucine (Ile, I)
n = 308 (8.12%)
Methionine (Met, M)
n = 174 (4.59%)
Proline (Pro, P)
n = 222 (5.86%)
Phenylalanine (Phe, F)
n = 218 (5.75%)
Tyrosine (Tyr, Y)
n = 108 (2.85%)
Tryptophan (Trp, W)
n = 108 (2.85%)
Aspartic acid (Asp, D)
n = 64 (1.69%)
Glutamic acid (Glu, E)
n = 97 (2.56%)
Asparagine (Asn, N)
n = 128 (3.38%)
Glutamine (Gln, Q)
n = 98 (2.59%)
Histidine (His, H)
n = 115 (3.03%)
Lysine (Lys, K)
n = 85 (2.24%)
Arginine (Arg, R)
n = 71 (1.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
84 224 143 60 159 310 27 80 86 12 29 42 70 14 54 164
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
31 12 15 61 109 100 7 24 82 77 39 28 68 119 7 50
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
156 153 3 31 90 101 5 11 42 34 74 12 26 31 97 27
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
88 85 12 19 45 84 1 9 19 35 8 1 2 6 2 96
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
815 1062 1113 802
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
484 1088 703 1517
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
208 1474 1546 564 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​G​r​u​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ j​a​p​o​n​e​n​s​i​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.