Viewing data for Raja rhina


Scientific name Raja rhina
Common name Longnose skate
Maximum lifespan 26.00 years (Raja rhina@AnAge)

Total mtDNA (size: 16910 bases) GC AT G C A T
Base content (bases) 7008 9902 4604 2404 4812 5090
Base content per 1 kb (bases) 414 586 272 142 285 301
Base content (%) 41.4% 58.6%
Total protein-coding genes (size: 11411 bases) GC AT G C A T
Base content (bases) 4874 6537 3383 1491 3275 3262
Base content per 1 kb (bases) 427 573 296 131 287 286
Base content (%) 42.7% 57.3%
D-loop (size: 1251 bases) GC AT G C A T
Base content (bases) 433 818 272 161 410 408
Base content per 1 kb (bases) 346 654 217 129 328 326
Base content (%) 34.6% 65.4%
Total tRNA-coding genes (size: 1549 bases) GC AT G C A T
Base content (bases) 607 942 348 259 432 510
Base content per 1 kb (bases) 392 608 225 167 279 329
Base content (%) 39.2% 60.8%
Total rRNA-coding genes (size: 2642 bases) GC AT G C A T
Base content (bases) 1065 1577 587 478 683 894
Base content per 1 kb (bases) 403 597 222 181 259 338
Base content (%) 40.3% 59.7%
12S rRNA gene (size: 967 bases) GC AT G C A T
Base content (bases) 413 554 227 186 247 307
Base content per 1 kb (bases) 427 573 235 192 255 317
Base content (%) 42.7% 57.3%
16S rRNA gene (size: 1675 bases) GC AT G C A T
Base content (bases) 652 1023 360 292 436 587
Base content per 1 kb (bases) 389 611 215 174 260 350
Base content (%) 38.9% 61.1%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 288 396 212 76 203 193
Base content per 1 kb (bases) 421 579 310 111 297 282
Base content (%) 42.1% 57.9%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 65 103 50 15 52 51
Base content per 1 kb (bases) 387 613 298 89 310 304
Base content (%) 38.7% 61.3%
COX1 (size: 1557 bases) GC AT G C A T
Base content (bases) 673 884 408 265 486 398
Base content per 1 kb (bases) 432 568 262 170 312 256
Base content (%) 43.2% 56.8%
COX2 (size: 691 bases) GC AT G C A T
Base content (bases) 273 418 164 109 196 222
Base content per 1 kb (bases) 395 605 237 158 284 321
Base content (%) 39.5% 60.5%
COX3 (size: 786 bases) GC AT G C A T
Base content (bases) 361 425 232 129 221 204
Base content per 1 kb (bases) 459 541 295 164 281 260
Base content (%) 45.9% 54.1%
CYTB (size: 1143 bases) GC AT G C A T
Base content (bases) 506 637 354 152 341 296
Base content per 1 kb (bases) 443 557 310 133 298 259
Base content (%) 44.3% 55.7%
ND1 (size: 975 bases) GC AT G C A T
Base content (bases) 437 538 313 124 268 270
Base content per 1 kb (bases) 448 552 321 127 275 277
Base content (%) 44.8% 55.2%
ND2 (size: 1046 bases) GC AT G C A T
Base content (bases) 444 602 340 104 291 311
Base content per 1 kb (bases) 424 576 325 99 278 297
Base content (%) 42.4% 57.6%
ND3 (size: 349 bases) GC AT G C A T
Base content (bases) 157 192 107 50 110 82
Base content per 1 kb (bases) 450 550 307 143 315 235
Base content (%) 45.0% 55.0%
ND4 (size: 1381 bases) GC AT G C A T
Base content (bases) 581 800 417 164 402 398
Base content per 1 kb (bases) 421 579 302 119 291 288
Base content (%) 42.1% 57.9%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 133 164 98 35 91 73
Base content per 1 kb (bases) 448 552 330 118 306 246
Base content (%) 44.8% 55.2%
ND5 (size: 1836 bases) GC AT G C A T
Base content (bases) 761 1075 541 220 527 548
Base content per 1 kb (bases) 414 586 295 120 287 298
Base content (%) 41.4% 58.6%
ND6 (size: 519 bases) GC AT G C A T
Base content (bases) 199 320 149 50 95 225
Base content per 1 kb (bases) 383 617 287 96 183 434
Base content (%) 38.3% 61.7%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.96%)
Alanine (Ala, A)
n = 18 (7.93%)
Serine (Ser, S)
n = 8 (3.52%)
Threonine (Thr, T)
n = 24 (10.57%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 11 (4.85%)
Leucine (Leu, L)
n = 54 (23.79%)
Isoleucine (Ile, I)
n = 24 (10.57%)
Methionine (Met, M)
n = 10 (4.41%)
Proline (Pro, P)
n = 15 (6.61%)
Phenylalanine (Phe, F)
n = 12 (5.29%)
Tyrosine (Tyr, Y)
n = 3 (1.32%)
Tryptophan (Trp, W)
n = 4 (1.76%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 10 (4.41%)
Glutamine (Gln, Q)
n = 10 (4.41%)
Histidine (His, H)
n = 4 (1.76%)
Lysine (Lys, K)
n = 1 (0.44%)
Arginine (Arg, R)
n = 5 (2.2%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 9 8 11 13 13 3 12 9 1 2 3 5 1 7 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 3 8 7 0 1 4 3 1 2 8 5 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 11 0 0 2 2 1 1 2 2 1 1 2 3 7 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 4 0 1 0 1 0 0 2 3 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
43 74 72 39
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
21 62 34 111
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
12 76 87 53
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNLNPWFLIFLFSWLFFLIVLPHKLTSYLLNYDPAPMNTEKQKPEPWNWPWS*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 1 (1.82%)
Serine (Ser, S)
n = 3 (5.45%)
Threonine (Thr, T)
n = 2 (3.64%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 1 (1.82%)
Leucine (Leu, L)
n = 10 (18.18%)
Isoleucine (Ile, I)
n = 2 (3.64%)
Methionine (Met, M)
n = 2 (3.64%)
Proline (Pro, P)
n = 8 (14.55%)
Phenylalanine (Phe, F)
n = 5 (9.09%)
Tyrosine (Tyr, Y)
n = 2 (3.64%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 1 (1.82%)
Glutamic acid (Glu, E)
n = 2 (3.64%)
Asparagine (Asn, N)
n = 5 (9.09%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 1 (1.82%)
Lysine (Lys, K)
n = 3 (5.45%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 1 1 1 2 0 1 4 2 0 0 1 0 0 3 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 0 1 0 0 0 0 0 0 2 4 2 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 1 0 1 2 0 0 0 0 0 2 1 2 1 4 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 2 0 0 1 3 0 0 0 0 0 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
5 15 14 22
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
5 14 17 20
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
5 21 20 10
COX1 (size: 1557 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 46 (8.88%)
Alanine (Ala, A)
n = 43 (8.3%)
Serine (Ser, S)
n = 32 (6.18%)
Threonine (Thr, T)
n = 35 (6.76%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 40 (7.72%)
Leucine (Leu, L)
n = 63 (12.16%)
Isoleucine (Ile, I)
n = 43 (8.3%)
Methionine (Met, M)
n = 25 (4.83%)
Proline (Pro, P)
n = 29 (5.6%)
Phenylalanine (Phe, F)
n = 40 (7.72%)
Tyrosine (Tyr, Y)
n = 19 (3.67%)
Tryptophan (Trp, W)
n = 17 (3.28%)
Aspartic acid (Asp, D)
n = 14 (2.7%)
Glutamic acid (Glu, E)
n = 11 (2.12%)
Asparagine (Asn, N)
n = 16 (3.09%)
Glutamine (Gln, Q)
n = 10 (1.93%)
Histidine (His, H)
n = 18 (3.47%)
Lysine (Lys, K)
n = 8 (1.54%)
Arginine (Arg, R)
n = 8 (1.54%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
27 16 22 15 11 15 5 14 7 3 13 13 11 3 20 20
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 1 8 17 17 1 10 17 10 9 5 9 15 0 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 18 0 7 12 7 2 3 1 3 16 3 3 14 2 10
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 9 2 7 7 7 1 3 2 3 0 0 0 1 0 14
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
154 111 131 123
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
76 135 97 211
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
35 162 170 152
COX2 (size: 691 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.93%)
Alanine (Ala, A)
n = 16 (6.99%)
Serine (Ser, S)
n = 13 (5.68%)
Threonine (Thr, T)
n = 11 (4.8%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 17 (7.42%)
Leucine (Leu, L)
n = 27 (11.79%)
Isoleucine (Ile, I)
n = 24 (10.48%)
Methionine (Met, M)
n = 12 (5.24%)
Proline (Pro, P)
n = 13 (5.68%)
Phenylalanine (Phe, F)
n = 8 (3.49%)
Tyrosine (Tyr, Y)
n = 10 (4.37%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 11 (4.8%)
Glutamic acid (Glu, E)
n = 17 (7.42%)
Asparagine (Asn, N)
n = 7 (3.06%)
Glutamine (Gln, Q)
n = 8 (3.49%)
Histidine (His, H)
n = 10 (4.37%)
Lysine (Lys, K)
n = 4 (1.75%)
Arginine (Arg, R)
n = 6 (2.62%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 7 9 3 4 9 2 8 7 1 5 6 6 0 7 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 2 0 1 6 9 0 2 1 5 1 2 4 7 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 5 0 2 3 5 0 0 3 7 3 1 1 4 3 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 14 3 5 6 3 1 1 1 3 1 0 0 0 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
70 55 61 44
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 50 67 88
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 59 94 63
COX3 (size: 786 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 21 (8.05%)
Alanine (Ala, A)
n = 22 (8.43%)
Serine (Ser, S)
n = 12 (4.6%)
Threonine (Thr, T)
n = 22 (8.43%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 19 (7.28%)
Leucine (Leu, L)
n = 35 (13.41%)
Isoleucine (Ile, I)
n = 15 (5.75%)
Methionine (Met, M)
n = 7 (2.68%)
Proline (Pro, P)
n = 13 (4.98%)
Phenylalanine (Phe, F)
n = 24 (9.2%)
Tyrosine (Tyr, Y)
n = 10 (3.83%)
Tryptophan (Trp, W)
n = 12 (4.6%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 10 (3.83%)
Asparagine (Asn, N)
n = 3 (1.15%)
Glutamine (Gln, Q)
n = 7 (2.68%)
Histidine (His, H)
n = 16 (6.13%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 5 6 6 13 8 1 6 5 2 3 7 8 1 15 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 1 3 14 5 0 2 9 9 1 2 4 7 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 12 1 1 2 6 0 0 3 6 4 1 1 0 3 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 9 1 1 4 2 0 1 1 3 0 0 0 1 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
77 69 52 64
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
42 66 54 100
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
10 97 98 57
CYTB (size: 1143 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (6.32%)
Alanine (Ala, A)
n = 21 (5.53%)
Serine (Ser, S)
n = 24 (6.32%)
Threonine (Thr, T)
n = 24 (6.32%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 18 (4.74%)
Leucine (Leu, L)
n = 69 (18.16%)
Isoleucine (Ile, I)
n = 38 (10.0%)
Methionine (Met, M)
n = 7 (1.84%)
Proline (Pro, P)
n = 22 (5.79%)
Phenylalanine (Phe, F)
n = 31 (8.16%)
Tyrosine (Tyr, Y)
n = 14 (3.68%)
Tryptophan (Trp, W)
n = 13 (3.42%)
Aspartic acid (Asp, D)
n = 8 (2.11%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 22 (5.79%)
Glutamine (Gln, Q)
n = 8 (2.11%)
Histidine (His, H)
n = 11 (2.89%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
18 20 6 17 23 13 5 11 8 0 5 9 3 1 13 18
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 2 2 16 3 0 0 10 8 6 2 7 10 3 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 11 0 3 4 13 0 1 3 2 12 3 0 10 12 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 3 3 3 5 8 1 1 2 5 0 0 0 1 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
77 107 104 93
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
52 87 79 163
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
23 160 113 85
ND1 (size: 975 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (5.25%)
Alanine (Ala, A)
n = 25 (7.72%)
Serine (Ser, S)
n = 21 (6.48%)
Threonine (Thr, T)
n = 30 (9.26%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 15 (4.63%)
Leucine (Leu, L)
n = 65 (20.06%)
Isoleucine (Ile, I)
n = 23 (7.1%)
Methionine (Met, M)
n = 15 (4.63%)
Proline (Pro, P)
n = 22 (6.79%)
Phenylalanine (Phe, F)
n = 17 (5.25%)
Tyrosine (Tyr, Y)
n = 12 (3.7%)
Tryptophan (Trp, W)
n = 8 (2.47%)
Aspartic acid (Asp, D)
n = 3 (0.93%)
Glutamic acid (Glu, E)
n = 9 (2.78%)
Asparagine (Asn, N)
n = 11 (3.4%)
Glutamine (Gln, Q)
n = 8 (2.47%)
Histidine (His, H)
n = 7 (2.16%)
Lysine (Lys, K)
n = 8 (2.47%)
Arginine (Arg, R)
n = 8 (2.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 12 13 5 16 24 4 16 7 1 3 6 6 0 8 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 3 15 7 0 2 7 3 5 2 11 8 1 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
13 7 2 4 8 6 1 1 1 5 7 1 0 4 7 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 8 1 1 2 8 0 3 2 1 2 0 0 1 0 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
69 94 89 73
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
35 96 59 135
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
20 123 122 60
ND2 (size: 1046 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (4.9%)
Alanine (Ala, A)
n = 23 (6.63%)
Serine (Ser, S)
n = 27 (7.78%)
Threonine (Thr, T)
n = 42 (12.1%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 7 (2.02%)
Leucine (Leu, L)
n = 79 (22.77%)
Isoleucine (Ile, I)
n = 31 (8.93%)
Methionine (Met, M)
n = 21 (6.05%)
Proline (Pro, P)
n = 19 (5.48%)
Phenylalanine (Phe, F)
n = 14 (4.03%)
Tyrosine (Tyr, Y)
n = 6 (1.73%)
Tryptophan (Trp, W)
n = 10 (2.88%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 14 (4.03%)
Glutamine (Gln, Q)
n = 13 (3.75%)
Histidine (His, H)
n = 6 (1.73%)
Lysine (Lys, K)
n = 9 (2.59%)
Arginine (Arg, R)
n = 3 (0.86%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 17 17 15 25 23 1 13 11 2 2 2 3 0 5 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 0 1 17 5 0 0 6 9 2 4 7 6 2 11
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 18 2 5 10 9 0 2 1 2 4 1 2 5 9 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 4 0 0 2 8 1 1 1 1 0 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
53 105 120 70
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
34 108 54 152
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
17 127 136 68
ND3 (size: 1046 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (4.9%)
Alanine (Ala, A)
n = 23 (6.63%)
Serine (Ser, S)
n = 27 (7.78%)
Threonine (Thr, T)
n = 42 (12.1%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 7 (2.02%)
Leucine (Leu, L)
n = 79 (22.77%)
Isoleucine (Ile, I)
n = 31 (8.93%)
Methionine (Met, M)
n = 21 (6.05%)
Proline (Pro, P)
n = 19 (5.48%)
Phenylalanine (Phe, F)
n = 14 (4.03%)
Tyrosine (Tyr, Y)
n = 6 (1.73%)
Tryptophan (Trp, W)
n = 10 (2.88%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 14 (4.03%)
Glutamine (Gln, Q)
n = 13 (3.75%)
Histidine (His, H)
n = 6 (1.73%)
Lysine (Lys, K)
n = 9 (2.59%)
Arginine (Arg, R)
n = 3 (0.86%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 17 17 15 25 23 1 13 11 2 2 2 3 0 5 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 0 1 17 5 0 0 6 9 2 4 7 6 2 11
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 18 2 5 10 9 0 2 1 2 4 1 2 5 9 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 4 0 0 2 8 1 1 1 1 0 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
53 105 120 70
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
34 108 54 152
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
17 127 136 68
ND4 (size: 1381 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 22 (4.79%)
Alanine (Ala, A)
n = 35 (7.63%)
Serine (Ser, S)
n = 37 (8.06%)
Threonine (Thr, T)
n = 34 (7.41%)
Cysteine (Cys, C)
n = 4 (0.87%)
Valine (Val, V)
n = 10 (2.18%)
Leucine (Leu, L)
n = 94 (20.48%)
Isoleucine (Ile, I)
n = 47 (10.24%)
Methionine (Met, M)
n = 23 (5.01%)
Proline (Pro, P)
n = 26 (5.66%)
Phenylalanine (Phe, F)
n = 19 (4.14%)
Tyrosine (Tyr, Y)
n = 15 (3.27%)
Tryptophan (Trp, W)
n = 18 (3.92%)
Aspartic acid (Asp, D)
n = 4 (0.87%)
Glutamic acid (Glu, E)
n = 11 (2.4%)
Asparagine (Asn, N)
n = 14 (3.05%)
Glutamine (Gln, Q)
n = 11 (2.4%)
Histidine (His, H)
n = 11 (2.4%)
Lysine (Lys, K)
n = 15 (3.27%)
Arginine (Arg, R)
n = 10 (2.18%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
27 20 18 20 26 21 5 21 9 2 3 4 3 0 11 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 4 7 16 12 0 1 14 6 1 6 12 8 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 17 0 4 11 12 0 3 7 5 10 1 1 4 10 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 9 2 2 2 15 0 1 2 6 1 0 0 0 0 17
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
82 130 143 105
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
64 122 81 193
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
18 165 174 103
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 5 (5.1%)
Alanine (Ala, A)
n = 11 (11.22%)
Serine (Ser, S)
n = 12 (12.24%)
Threonine (Thr, T)
n = 9 (9.18%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 1 (1.02%)
Leucine (Leu, L)
n = 22 (22.45%)
Isoleucine (Ile, I)
n = 6 (6.12%)
Methionine (Met, M)
n = 6 (6.12%)
Proline (Pro, P)
n = 3 (3.06%)
Phenylalanine (Phe, F)
n = 5 (5.1%)
Tyrosine (Tyr, Y)
n = 1 (1.02%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 4 (4.08%)
Glutamine (Gln, Q)
n = 1 (1.02%)
Histidine (His, H)
n = 3 (3.06%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 2 (2.04%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 2 5 6 9 4 0 3 1 0 0 0 1 0 2 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 2 2 5 4 0 1 1 3 0 2 1 0 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 4 0 1 4 5 0 1 1 0 1 1 0 2 2 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 2 0 1 0 0 0 0 2 0 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
20 28 27 24
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
13 33 13 40
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
2 37 33 27
ND5 (size: 1836 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 28 (4.58%)
Alanine (Ala, A)
n = 43 (7.04%)
Serine (Ser, S)
n = 45 (7.36%)
Threonine (Thr, T)
n = 52 (8.51%)
Cysteine (Cys, C)
n = 5 (0.82%)
Valine (Val, V)
n = 23 (3.76%)
Leucine (Leu, L)
n = 108 (17.68%)
Isoleucine (Ile, I)
n = 54 (8.84%)
Methionine (Met, M)
n = 27 (4.42%)
Proline (Pro, P)
n = 29 (4.75%)
Phenylalanine (Phe, F)
n = 43 (7.04%)
Tyrosine (Tyr, Y)
n = 14 (2.29%)
Tryptophan (Trp, W)
n = 14 (2.29%)
Aspartic acid (Asp, D)
n = 13 (2.13%)
Glutamic acid (Glu, E)
n = 10 (1.64%)
Asparagine (Asn, N)
n = 35 (5.73%)
Glutamine (Gln, Q)
n = 21 (3.44%)
Histidine (His, H)
n = 14 (2.29%)
Lysine (Lys, K)
n = 24 (3.93%)
Arginine (Arg, R)
n = 9 (1.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
26 28 21 19 28 35 8 16 20 1 4 7 9 3 23 20
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 2 3 12 22 9 0 4 12 10 2 7 9 10 3 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
19 27 0 8 14 10 2 2 9 5 9 4 2 14 21 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 7 3 6 7 22 2 1 2 6 0 0 0 1 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
117 163 203 129
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
67 158 132 255
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
36 220 213 143
ND6 (size: 519 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (13.95%)
Alanine (Ala, A)
n = 13 (7.56%)
Serine (Ser, S)
n = 15 (8.72%)
Threonine (Thr, T)
n = 3 (1.74%)
Cysteine (Cys, C)
n = 1 (0.58%)
Valine (Val, V)
n = 25 (14.53%)
Leucine (Leu, L)
n = 29 (16.86%)
Isoleucine (Ile, I)
n = 6 (3.49%)
Methionine (Met, M)
n = 7 (4.07%)
Proline (Pro, P)
n = 4 (2.33%)
Phenylalanine (Phe, F)
n = 10 (5.81%)
Tyrosine (Tyr, Y)
n = 13 (7.56%)
Tryptophan (Trp, W)
n = 7 (4.07%)
Aspartic acid (Asp, D)
n = 3 (1.74%)
Glutamic acid (Glu, E)
n = 5 (2.91%)
Asparagine (Asn, N)
n = 3 (1.74%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 1 (0.58%)
Arginine (Arg, R)
n = 3 (1.74%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 1 5 4 0 1 0 16 0 0 8 2 7 8 9 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 0 7 0 4 2 11 2 3 8 3 0 0 1 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 1 0 7 0 2 1 5 0 11 2 3 8 3 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 0 5 3 0 0 1 3 0 0 0 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
70 12 25 66
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
40 30 26 77
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
39 8 44 82
Total protein-coding genes (size: 11432 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 228 (5.99%)
Alanine (Ala, A)
n = 281 (7.38%)
Serine (Ser, S)
n = 257 (6.75%)
Threonine (Thr, T)
n = 293 (7.69%)
Cysteine (Cys, C)
n = 22 (0.58%)
Valine (Val, V)
n = 191 (5.02%)
Leucine (Leu, L)
n = 684 (17.96%)
Isoleucine (Ile, I)
n = 324 (8.51%)
Methionine (Met, M)
n = 163 (4.28%)
Proline (Pro, P)
n = 212 (5.57%)
Phenylalanine (Phe, F)
n = 236 (6.2%)
Tyrosine (Tyr, Y)
n = 121 (3.18%)
Tryptophan (Trp, W)
n = 119 (3.13%)
Aspartic acid (Asp, D)
n = 70 (1.84%)
Glutamic acid (Glu, E)
n = 97 (2.55%)
Asparagine (Asn, N)
n = 146 (3.83%)
Glutamine (Gln, Q)
n = 101 (2.65%)
Histidine (His, H)
n = 101 (2.65%)
Lysine (Lys, K)
n = 85 (2.23%)
Arginine (Arg, R)
n = 69 (1.81%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
182 142 131 127 178 175 36 146 88 13 49 62 62 18 127 109
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
32 8 14 49 142 87 3 35 86 71 36 40 79 82 11 57
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
96 135 5 45 76 78 7 20 31 49 72 21 22 64 82 31
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
70 76 21 32 38 78 7 15 18 32 4 0 0 9 0 98
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
867 999 1062 881
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
489 992 730 1598
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
236 1295 1348 930 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​R​a​j​a​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ r​h​i​n​a​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.