Viewing data for Dicerorhinus sumatrensis


Scientific name Dicerorhinus sumatrensis
Common name Sumatran rhinoceros
Maximum lifespan 32.80 years (Dicerorhinus sumatrensis@AnAge)

Total mtDNA (size: 16466 bases) GC AT G C A T
Base content (bases) 6840 9626 4657 2183 4173 5453
Base content per 1 kb (bases) 415 585 283 133 253 331
Base content (%) 41.5% 58.5%
Total protein-coding genes (size: 11338 bases) GC AT G C A T
Base content (bases) 4842 6496 3459 1383 2895 3601
Base content per 1 kb (bases) 427 573 305 122 255 318
Base content (%) 42.7% 57.3%
D-loop: No data available for this section.
Total tRNA-coding genes (size: 1502 bases) GC AT G C A T
Base content (bases) 554 948 323 231 420 528
Base content per 1 kb (bases) 369 631 215 154 280 352
Base content (%) 36.9% 63.1%
Total rRNA-coding genes (size: 2550 bases) GC AT G C A T
Base content (bases) 1020 1530 593 427 572 958
Base content per 1 kb (bases) 400 600 233 167 224 376
Base content (%) 40.0% 60.0%
12S rRNA gene (size: 972 bases) GC AT G C A T
Base content (bases) 406 566 239 167 202 364
Base content per 1 kb (bases) 418 582 246 172 208 374
Base content (%) 41.8% 58.2%
16S rRNA gene (size: 1578 bases) GC AT G C A T
Base content (bases) 614 964 354 260 370 594
Base content per 1 kb (bases) 389 611 224 165 234 376
Base content (%) 38.9% 61.1%

ATP6 (size: 681 bases) GC AT G C A T
Base content (bases) 282 399 202 80 198 201
Base content per 1 kb (bases) 414 586 297 117 291 295
Base content (%) 41.4% 58.6%
ATP8 (size: 204 bases) GC AT G C A T
Base content (bases) 71 133 58 13 51 82
Base content per 1 kb (bases) 348 652 284 64 250 402
Base content (%) 34.8% 65.2%
COX1 (size: 1545 bases) GC AT G C A T
Base content (bases) 689 856 421 268 422 434
Base content per 1 kb (bases) 446 554 272 173 273 281
Base content (%) 44.6% 55.4%
COX2 (size: 684 bases) GC AT G C A T
Base content (bases) 285 399 188 97 175 224
Base content per 1 kb (bases) 417 583 275 142 256 327
Base content (%) 41.7% 58.3%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 365 419 243 122 208 211
Base content per 1 kb (bases) 466 534 310 156 265 269
Base content (%) 46.6% 53.4%
CYTB (size: 1140 bases) GC AT G C A T
Base content (bases) 532 608 388 144 280 328
Base content per 1 kb (bases) 467 533 340 126 246 288
Base content (%) 46.7% 53.3%
ND1 (size: 956 bases) GC AT G C A T
Base content (bases) 404 552 298 106 237 315
Base content per 1 kb (bases) 423 577 312 111 248 329
Base content (%) 42.3% 57.7%
ND2 (size: 1042 bases) GC AT G C A T
Base content (bases) 405 637 312 93 258 379
Base content per 1 kb (bases) 389 611 299 89 248 364
Base content (%) 38.9% 61.1%
ND3 (size: 346 bases) GC AT G C A T
Base content (bases) 147 199 101 46 92 107
Base content per 1 kb (bases) 425 575 292 133 266 309
Base content (%) 42.5% 57.5%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 570 808 426 144 352 456
Base content per 1 kb (bases) 414 586 309 104 255 331
Base content (%) 41.4% 58.6%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 124 173 86 38 88 85
Base content per 1 kb (bases) 418 582 290 128 296 286
Base content (%) 41.8% 58.2%
ND5 (size: 1821 bases) GC AT G C A T
Base content (bases) 788 1033 585 203 455 578
Base content per 1 kb (bases) 433 567 321 111 250 317
Base content (%) 43.3% 56.7%
ND6 (size: 528 bases) GC AT G C A T
Base content (bases) 206 322 170 36 97 225
Base content per 1 kb (bases) 390 610 322 68 184 426
Base content (%) 39.0% 61.0%

ATP6 (size: 681 bases)
Amino acid sequence: MNENLFASFTTPTMMGLPIVILIIMFPSIMFPSPNRLINNRLISMQQWLLQLTSKQMMSAHNSKGQTWALMLMSLILFIASTNLLGLLPH View full
Amino acid frequencies:
Glycine (Gly, G)
n = 10 (4.42%)
Alanine (Ala, A)
n = 18 (7.96%)
Serine (Ser, S)
n = 15 (6.64%)
Threonine (Thr, T)
n = 22 (9.73%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 9 (3.98%)
Leucine (Leu, L)
n = 41 (18.14%)
Isoleucine (Ile, I)
n = 25 (11.06%)
Methionine (Met, M)
n = 15 (6.64%)
Proline (Pro, P)
n = 13 (5.75%)
Phenylalanine (Phe, F)
n = 14 (6.19%)
Tyrosine (Tyr, Y)
n = 2 (0.88%)
Tryptophan (Trp, W)
n = 3 (1.33%)
Aspartic acid (Asp, D)
n = 2 (0.88%)
Glutamic acid (Glu, E)
n = 3 (1.33%)
Asparagine (Asn, N)
n = 10 (4.42%)
Glutamine (Gln, Q)
n = 9 (3.98%)
Histidine (His, H)
n = 7 (3.1%)
Lysine (Lys, K)
n = 4 (1.77%)
Arginine (Arg, R)
n = 4 (1.77%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 12 12 10 6 12 6 7 7 2 1 1 6 1 8 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 4 9 5 0 0 1 8 1 6 6 1 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 7 2 2 3 5 0 1 4 0 2 0 0 6 4 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 3 0 0 2 3 1 1 1 2 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
42 67 81 37
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
22 63 38 104
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
16 72 82 57
ATP8 (size: 204 bases)
Amino acid sequence: MPQLDTSTWFITIMSMIITLFIVFQLKVSNHLHPSNPELKPTKTLTHTTPWESKWTKIYSPLSLPLQ*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 0 (0%)
Serine (Ser, S)
n = 7 (10.45%)
Threonine (Thr, T)
n = 10 (14.93%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 2 (2.99%)
Leucine (Leu, L)
n = 9 (13.43%)
Isoleucine (Ile, I)
n = 6 (8.96%)
Methionine (Met, M)
n = 3 (4.48%)
Proline (Pro, P)
n = 7 (10.45%)
Phenylalanine (Phe, F)
n = 3 (4.48%)
Tyrosine (Tyr, Y)
n = 1 (1.49%)
Tryptophan (Trp, W)
n = 3 (4.48%)
Aspartic acid (Asp, D)
n = 1 (1.49%)
Glutamic acid (Glu, E)
n = 2 (2.99%)
Asparagine (Asn, N)
n = 2 (2.99%)
Glutamine (Gln, Q)
n = 3 (4.48%)
Histidine (His, H)
n = 3 (4.48%)
Lysine (Lys, K)
n = 5 (7.46%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 2 2 1 0 8 0 0 3 0 1 0 1 0 1 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 0 0 0 0 0 0 0 0 2 2 3 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 7 1 0 1 4 2 0 0 1 0 0 0 0 2 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 2 0 0 1 4 1 0 0 0 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
5 22 26 15
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
3 24 18 23
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
5 12 38 13
COX1 (size: 1545 bases)
Amino acid sequence: MFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAP View full
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.14%)
Alanine (Ala, A)
n = 40 (7.78%)
Serine (Ser, S)
n = 31 (6.03%)
Threonine (Thr, T)
n = 37 (7.2%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 40 (7.78%)
Leucine (Leu, L)
n = 59 (11.48%)
Isoleucine (Ile, I)
n = 35 (6.81%)
Methionine (Met, M)
n = 34 (6.61%)
Proline (Pro, P)
n = 28 (5.45%)
Phenylalanine (Phe, F)
n = 42 (8.17%)
Tyrosine (Tyr, Y)
n = 19 (3.7%)
Tryptophan (Trp, W)
n = 17 (3.31%)
Aspartic acid (Asp, D)
n = 14 (2.72%)
Glutamic acid (Glu, E)
n = 10 (1.95%)
Asparagine (Asn, N)
n = 18 (3.5%)
Glutamine (Gln, Q)
n = 7 (1.36%)
Histidine (His, H)
n = 18 (3.5%)
Lysine (Lys, K)
n = 9 (1.75%)
Arginine (Arg, R)
n = 8 (1.56%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
18 17 29 4 15 19 7 14 4 3 9 9 18 4 12 30
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 1 7 12 17 4 6 8 24 9 6 9 12 1 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 16 2 2 11 14 1 0 3 6 13 2 0 4 14 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
14 7 3 1 13 9 0 2 3 3 0 0 0 1 0 15
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
151 106 136 122
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
76 133 96 210
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
41 182 202 90
COX2 (size: 684 bases)
Amino acid sequence: MAYPFQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEI View full
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 8 (3.52%)
Serine (Ser, S)
n = 19 (8.37%)
Threonine (Thr, T)
n = 19 (8.37%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 13 (5.73%)
Leucine (Leu, L)
n = 34 (14.98%)
Isoleucine (Ile, I)
n = 19 (8.37%)
Methionine (Met, M)
n = 13 (5.73%)
Proline (Pro, P)
n = 14 (6.17%)
Phenylalanine (Phe, F)
n = 7 (3.08%)
Tyrosine (Tyr, Y)
n = 10 (4.41%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 11 (4.85%)
Glutamic acid (Glu, E)
n = 14 (6.17%)
Asparagine (Asn, N)
n = 5 (2.2%)
Glutamine (Gln, Q)
n = 6 (2.64%)
Histidine (His, H)
n = 8 (3.52%)
Lysine (Lys, K)
n = 6 (2.64%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 10 8 2 6 13 4 7 6 0 1 4 8 0 3 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 1 1 3 3 2 0 1 2 5 0 4 3 7 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 10 1 4 5 5 1 0 4 4 6 1 2 0 5 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 12 2 5 6 4 2 0 1 5 0 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
54 59 66 49
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 56 61 86
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
18 73 97 40
COX3 (size: 784 bases)
Amino acid sequence: MTHQTHAYHMVNPSPWPLTGALSALLMTSGLVMWFHYNSMLLLTLGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYGMILFIISE View full
Amino acid frequencies:
Glycine (Gly, G)
n = 20 (7.69%)
Alanine (Ala, A)
n = 15 (5.77%)
Serine (Ser, S)
n = 21 (8.08%)
Threonine (Thr, T)
n = 21 (8.08%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 17 (6.54%)
Leucine (Leu, L)
n = 32 (12.31%)
Isoleucine (Ile, I)
n = 13 (5.0%)
Methionine (Met, M)
n = 11 (4.23%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 23 (8.85%)
Tyrosine (Tyr, Y)
n = 12 (4.62%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 3 (1.15%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 7 (2.69%)
Glutamine (Gln, Q)
n = 7 (2.69%)
Histidine (His, H)
n = 17 (6.54%)
Lysine (Lys, K)
n = 3 (1.15%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 5 9 4 8 14 2 3 4 3 1 7 7 2 5 18
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 1 4 7 4 0 0 11 9 0 3 6 2 1 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 13 0 5 3 9 0 1 3 3 9 2 1 3 4 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
16 5 3 1 2 3 0 0 2 3 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
63 69 59 70
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 65 57 96
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
16 109 95 41
CYTB (size: 1140 bases)
Amino acid sequence: MTNIRKSHPLIKIISHSFIDLPTPSNISSWWNFGSLLGICLILQILTGLFLAMHYTPDTTTAFSSVAHICRDVNYGWIIRYTHANGASMF View full
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (6.6%)
Alanine (Ala, A)
n = 23 (6.07%)
Serine (Ser, S)
n = 27 (7.12%)
Threonine (Thr, T)
n = 27 (7.12%)
Cysteine (Cys, C)
n = 4 (1.06%)
Valine (Val, V)
n = 14 (3.69%)
Leucine (Leu, L)
n = 62 (16.36%)
Isoleucine (Ile, I)
n = 43 (11.35%)
Methionine (Met, M)
n = 10 (2.64%)
Proline (Pro, P)
n = 24 (6.33%)
Phenylalanine (Phe, F)
n = 26 (6.86%)
Tyrosine (Tyr, Y)
n = 14 (3.69%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 11 (2.9%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 15 (3.96%)
Glutamine (Gln, Q)
n = 6 (1.58%)
Histidine (His, H)
n = 13 (3.43%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 35 9 5 16 30 5 6 6 0 2 3 9 0 6 20
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 3 2 14 7 0 3 8 13 1 5 3 15 1 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
15 12 0 1 15 6 1 0 4 1 13 1 0 3 12 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 6 0 0 11 9 0 0 2 5 1 1 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
79 107 109 85
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
54 97 74 155
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
11 184 145 40
ND1 (size: 956 bases)
Amino acid sequence: MFTINMLLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPIADAIKLFIKEPLKPSTSSTTMFIIAPILALTLALTMWIPLP View full
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.79%)
Alanine (Ala, A)
n = 26 (8.2%)
Serine (Ser, S)
n = 22 (6.94%)
Threonine (Thr, T)
n = 25 (7.89%)
Cysteine (Cys, C)
n = 1 (0.32%)
Valine (Val, V)
n = 13 (4.1%)
Leucine (Leu, L)
n = 55 (17.35%)
Isoleucine (Ile, I)
n = 29 (9.15%)
Methionine (Met, M)
n = 20 (6.31%)
Proline (Pro, P)
n = 22 (6.94%)
Phenylalanine (Phe, F)
n = 20 (6.31%)
Tyrosine (Tyr, Y)
n = 11 (3.47%)
Tryptophan (Trp, W)
n = 9 (2.84%)
Aspartic acid (Asp, D)
n = 3 (0.95%)
Glutamic acid (Glu, E)
n = 11 (3.47%)
Asparagine (Asn, N)
n = 13 (4.1%)
Glutamine (Gln, Q)
n = 6 (1.89%)
Histidine (His, H)
n = 5 (1.58%)
Lysine (Lys, K)
n = 8 (2.52%)
Arginine (Arg, R)
n = 7 (2.21%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 22 17 3 9 36 0 7 6 0 1 4 8 0 3 17
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 1 2 13 10 1 0 5 6 1 3 5 13 1 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 11 2 0 6 14 0 1 1 4 7 1 0 2 11 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 11 0 1 2 7 1 0 1 6 0 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
65 88 97 68
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
31 93 57 137
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
10 117 160 31
ND2 (size: 1042 bases)
Amino acid sequence: INPIVFTTILTTVILGTMIVMTSSHWLMIWIGFEMNLLAIIPILMKKFNPRAMEASTKYFLTQATASMLLMMAIIINLMYSGQWAVTKIF View full
Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.05%)
Alanine (Ala, A)
n = 19 (5.49%)
Serine (Ser, S)
n = 29 (8.38%)
Threonine (Thr, T)
n = 40 (11.56%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 8 (2.31%)
Leucine (Leu, L)
n = 56 (16.18%)
Isoleucine (Ile, I)
n = 39 (11.27%)
Methionine (Met, M)
n = 37 (10.69%)
Proline (Pro, P)
n = 18 (5.2%)
Phenylalanine (Phe, F)
n = 13 (3.76%)
Tyrosine (Tyr, Y)
n = 9 (2.6%)
Tryptophan (Trp, W)
n = 10 (2.89%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 20 (5.78%)
Glutamine (Gln, Q)
n = 9 (2.6%)
Histidine (His, H)
n = 4 (1.16%)
Lysine (Lys, K)
n = 12 (3.47%)
Arginine (Arg, R)
n = 4 (1.16%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 24 36 2 13 32 4 3 8 1 0 4 3 1 6 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 1 10 8 0 0 7 6 1 0 9 9 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 25 0 7 5 12 3 0 2 3 6 1 2 3 17 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 5 0 0 1 11 1 0 1 2 1 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
47 86 150 64
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
30 104 60 153
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
16 122 169 40
ND3 (size: 1042 bases)
Amino acid sequence: INPIVFTTILTTVILGTMIVMTSSHWLMIWIGFEMNLLAIIPILMKKFNPRAMEASTKYFLTQATASMLLMMAIIINLMYSGQWAVTKIF View full
Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.05%)
Alanine (Ala, A)
n = 19 (5.49%)
Serine (Ser, S)
n = 29 (8.38%)
Threonine (Thr, T)
n = 40 (11.56%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 8 (2.31%)
Leucine (Leu, L)
n = 56 (16.18%)
Isoleucine (Ile, I)
n = 39 (11.27%)
Methionine (Met, M)
n = 37 (10.69%)
Proline (Pro, P)
n = 18 (5.2%)
Phenylalanine (Phe, F)
n = 13 (3.76%)
Tyrosine (Tyr, Y)
n = 9 (2.6%)
Tryptophan (Trp, W)
n = 10 (2.89%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 20 (5.78%)
Glutamine (Gln, Q)
n = 9 (2.6%)
Histidine (His, H)
n = 4 (1.16%)
Lysine (Lys, K)
n = 12 (3.47%)
Arginine (Arg, R)
n = 4 (1.16%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 24 36 2 13 32 4 3 8 1 0 4 3 1 6 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 1 10 8 0 0 7 6 1 0 9 9 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 25 0 7 5 12 3 0 2 3 6 1 2 3 17 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 5 0 0 1 11 1 0 1 2 1 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
47 86 150 64
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
30 104 60 153
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
16 122 169 40
ND4 (size: 1378 bases)
Amino acid sequence: MLKIIIPTLMLIPLTWLSKNSMIWINTTTYSLLISLISLSFLNQPNENSLNISLTFFSDPLSTPLLILTTWLLPLMIMASQHHLSKEPLT View full
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (3.71%)
Alanine (Ala, A)
n = 26 (5.68%)
Serine (Ser, S)
n = 40 (8.73%)
Threonine (Thr, T)
n = 43 (9.39%)
Cysteine (Cys, C)
n = 3 (0.66%)
Valine (Val, V)
n = 12 (2.62%)
Leucine (Leu, L)
n = 97 (21.18%)
Isoleucine (Ile, I)
n = 46 (10.04%)
Methionine (Met, M)
n = 31 (6.77%)
Proline (Pro, P)
n = 22 (4.8%)
Phenylalanine (Phe, F)
n = 14 (3.06%)
Tyrosine (Tyr, Y)
n = 19 (4.15%)
Tryptophan (Trp, W)
n = 12 (2.62%)
Aspartic acid (Asp, D)
n = 3 (0.66%)
Glutamic acid (Glu, E)
n = 9 (1.97%)
Asparagine (Asn, N)
n = 23 (5.02%)
Glutamine (Gln, Q)
n = 11 (2.4%)
Histidine (His, H)
n = 9 (1.97%)
Lysine (Lys, K)
n = 12 (2.62%)
Arginine (Arg, R)
n = 10 (2.18%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 31 26 7 19 49 7 14 11 0 0 4 6 2 4 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 1 2 3 13 9 1 1 9 7 0 2 13 6 1 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 25 0 3 10 16 0 1 10 6 13 1 1 7 16 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 9 0 0 3 8 4 0 1 7 2 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
67 134 166 92
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
53 120 86 200
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
24 172 204 59
ND4L (size: 297 bases)
Amino acid sequence: MSLVHMNIFLAFTVSLMGLLMYRSHLMSSLLCLEGMMLSLFIMATMMVLNSHFTLASMMPIILLVFAACEAALGLSLLVMISNTYGTDYV View full
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 7 (7.14%)
Serine (Ser, S)
n = 11 (11.22%)
Threonine (Thr, T)
n = 5 (5.1%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 6 (6.12%)
Leucine (Leu, L)
n = 22 (22.45%)
Isoleucine (Ile, I)
n = 5 (5.1%)
Methionine (Met, M)
n = 13 (13.27%)
Proline (Pro, P)
n = 1 (1.02%)
Phenylalanine (Phe, F)
n = 5 (5.1%)
Tyrosine (Tyr, Y)
n = 3 (3.06%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 4 (4.08%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 3 (3.06%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 1 (1.02%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 4 10 2 5 12 2 1 1 1 0 2 4 0 0 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 2 2 1 4 0 0 2 2 0 1 0 0 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 3 0 1 7 1 0 1 1 2 1 0 0 1 3 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 0 2 0 1 0 0 0 0 1 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
20 28 29 22
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
10 22 16 51
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
8 36 40 15
ND5 (size: 1821 bases)
Amino acid sequence: MNMFSPLMLTSLFMLTLPIISITTNTHKNATYPYLVKNTISCAFITSLIPAMMFIQSGQEVIISNWHWMTIQTLKLSLSFKLDYFSMIFV View full
Amino acid frequencies:
Glycine (Gly, G)
n = 28 (4.62%)
Alanine (Ala, A)
n = 41 (6.77%)
Serine (Ser, S)
n = 51 (8.42%)
Threonine (Thr, T)
n = 56 (9.24%)
Cysteine (Cys, C)
n = 6 (0.99%)
Valine (Val, V)
n = 19 (3.14%)
Leucine (Leu, L)
n = 95 (15.68%)
Isoleucine (Ile, I)
n = 54 (8.91%)
Methionine (Met, M)
n = 36 (5.94%)
Proline (Pro, P)
n = 29 (4.79%)
Phenylalanine (Phe, F)
n = 45 (7.43%)
Tyrosine (Tyr, Y)
n = 19 (3.14%)
Tryptophan (Trp, W)
n = 12 (1.98%)
Aspartic acid (Asp, D)
n = 9 (1.49%)
Glutamic acid (Glu, E)
n = 11 (1.82%)
Asparagine (Asn, N)
n = 31 (5.12%)
Glutamine (Gln, Q)
n = 19 (3.14%)
Histidine (His, H)
n = 13 (2.15%)
Lysine (Lys, K)
n = 24 (3.96%)
Arginine (Arg, R)
n = 8 (1.32%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 37 30 12 22 50 6 4 18 1 4 6 9 0 10 35
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 3 3 4 20 17 0 3 15 8 2 3 11 13 2 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
23 23 3 3 14 21 1 0 12 3 16 2 1 4 27 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 8 3 4 5 22 2 0 4 4 0 0 0 1 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
108 159 213 127
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
66 165 127 249
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
29 261 238 79
ND6 (size: 528 bases)
Amino acid sequence: MMTYIGFILSVVFVISFVGFSSKPSPIYGGLVLIVSGGVGCGIVMSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWVSNATVL View full
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (14.86%)
Alanine (Ala, A)
n = 6 (3.43%)
Serine (Ser, S)
n = 18 (10.29%)
Threonine (Thr, T)
n = 7 (4.0%)
Cysteine (Cys, C)
n = 2 (1.14%)
Valine (Val, V)
n = 30 (17.14%)
Leucine (Leu, L)
n = 17 (9.71%)
Isoleucine (Ile, I)
n = 14 (8.0%)
Methionine (Met, M)
n = 10 (5.71%)
Proline (Pro, P)
n = 3 (1.71%)
Phenylalanine (Phe, F)
n = 14 (8.0%)
Tyrosine (Tyr, Y)
n = 8 (4.57%)
Tryptophan (Trp, W)
n = 4 (2.29%)
Aspartic acid (Asp, D)
n = 3 (1.71%)
Glutamic acid (Glu, E)
n = 8 (4.57%)
Asparagine (Asn, N)
n = 1 (0.57%)
Glutamine (Gln, Q)
n = 1 (0.57%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 2 (1.14%)
Arginine (Arg, R)
n = 1 (0.57%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 0 4 1 0 0 0 8 0 1 10 2 4 14 12 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 2 0 3 0 2 1 11 1 2 12 3 0 0 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 2 1 5 0 3 0 10 0 7 1 2 8 1 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 0 8 3 0 1 1 1 0 0 0 0 0 1 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
73 6 44 53
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 24 24 85
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
54 6 29 87
Total protein-coding genes (size: 11406 bases)
Amino acid sequence: MFTINMLLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPIADAIKLFIKEPLKPSTSSTTMFIIAPILALTLALTMWIPLP View full
Amino acid frequencies:
Glycine (Gly, G)
n = 214 (5.63%)
Alanine (Ala, A)
n = 241 (6.34%)
Serine (Ser, S)
n = 300 (7.9%)
Threonine (Thr, T)
n = 320 (8.42%)
Cysteine (Cys, C)
n = 25 (0.66%)
Valine (Val, V)
n = 186 (4.9%)
Leucine (Leu, L)
n = 605 (15.93%)
Isoleucine (Ile, I)
n = 335 (8.82%)
Methionine (Met, M)
n = 238 (6.26%)
Proline (Pro, P)
n = 199 (5.24%)
Phenylalanine (Phe, F)
n = 234 (6.16%)
Tyrosine (Tyr, Y)
n = 130 (3.42%)
Tryptophan (Trp, W)
n = 103 (2.71%)
Aspartic acid (Asp, D)
n = 65 (1.71%)
Glutamic acid (Glu, E)
n = 95 (2.5%)
Asparagine (Asn, N)
n = 152 (4.0%)
Glutamine (Gln, Q)
n = 89 (2.34%)
Histidine (His, H)
n = 100 (2.63%)
Lysine (Lys, K)
n = 98 (2.58%)
Arginine (Arg, R)
n = 63 (1.66%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
133 202 196 53 123 292 45 77 76 13 30 46 84 26 73 161
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
42 11 14 36 107 90 8 25 69 93 27 41 69 82 7 39
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
112 157 12 34 82 114 9 16 45 40 90 13 15 36 116 22
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
78 73 22 15 50 85 13 4 17 38 4 1 0 7 0 90
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
801 964 1205 830
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
467 999 736 1598
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
256 1381 1555 608 

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Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.