Viewing data for Trinectes maculatus
| Scientific name | Trinectes maculatus |
| Common name | Hogchoker |
| Maximum lifespan | 6.00 years (Trinectes maculatus@AnAge) |
| Total mtDNA (size: 16553 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 7701 | 8851 | 5109 | 2592 | 4117 | 4734 |
| Base content per 1 kb (bases) | 465 | 535 | 309 | 157 | 249 | 286 |
| Base content (%) | 46.5% | 53.5% | ||||
| Total protein-coding genes (size: 11399 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 5377 | 6022 | 3740 | 1637 | 2963 | 3059 |
| Base content per 1 kb (bases) | 472 | 528 | 328 | 144 | 260 | 268 |
| Base content (%) | 47.2% | 52.8% | ||||
| D-loop (size: 880 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 327 | 552 | 192 | 135 | 275 | 277 |
| Base content per 1 kb (bases) | 372 | 627 | 218 | 153 | 313 | 315 |
| Base content (%) | 37.2% | 62.7% | ||||
| Total tRNA-coding genes (size: 1540 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 702 | 838 | 402 | 300 | 361 | 477 |
| Base content per 1 kb (bases) | 456 | 544 | 261 | 195 | 234 | 310 |
| Base content (%) | 45.6% | 54.4% | ||||
| Total rRNA-coding genes (size: 2660 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 1257 | 1403 | 746 | 511 | 504 | 899 |
| Base content per 1 kb (bases) | 473 | 527 | 280 | 192 | 189 | 338 |
| Base content (%) | 47.3% | 52.7% | ||||
| 12S rRNA gene (size: 959 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 460 | 499 | 268 | 192 | 180 | 319 |
| Base content per 1 kb (bases) | 480 | 520 | 279 | 200 | 188 | 333 |
| Base content (%) | 48.0% | 52.0% | ||||
| 16S rRNA gene (size: 1701 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 797 | 904 | 478 | 319 | 324 | 580 |
| Base content per 1 kb (bases) | 469 | 531 | 281 | 188 | 190 | 341 |
| Base content (%) | 46.9% | 53.1% | ||||
| ATP6 (size: 684 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 310 | 374 | 220 | 90 | 200 | 174 |
| Base content per 1 kb (bases) | 453 | 547 | 322 | 132 | 292 | 254 |
| Base content (%) | 45.3% | 54.7% | ||||
| ATP8 (size: 168 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 73 | 95 | 61 | 12 | 41 | 54 |
| Base content per 1 kb (bases) | 435 | 565 | 363 | 71 | 244 | 321 |
| Base content (%) | 43.5% | 56.5% | ||||
| COX1 (size: 1549 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 728 | 821 | 455 | 273 | 437 | 384 |
| Base content per 1 kb (bases) | 470 | 530 | 294 | 176 | 282 | 248 |
| Base content (%) | 47.0% | 53.0% | ||||
| COX2 (size: 691 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 312 | 379 | 199 | 113 | 176 | 203 |
| Base content per 1 kb (bases) | 452 | 548 | 288 | 164 | 255 | 294 |
| Base content (%) | 45.2% | 54.8% | ||||
| COX3 (size: 785 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 388 | 397 | 254 | 134 | 204 | 193 |
| Base content per 1 kb (bases) | 494 | 506 | 324 | 171 | 260 | 246 |
| Base content (%) | 49.4% | 50.6% | ||||
| CYTB (size: 1133 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 545 | 588 | 373 | 172 | 310 | 278 |
| Base content per 1 kb (bases) | 481 | 519 | 329 | 152 | 274 | 245 |
| Base content (%) | 48.1% | 51.9% | ||||
| ND1 (size: 975 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 490 | 485 | 343 | 147 | 242 | 243 |
| Base content per 1 kb (bases) | 503 | 497 | 352 | 151 | 248 | 249 |
| Base content (%) | 50.3% | 49.7% | ||||
| ND2 (size: 1053 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 516 | 537 | 396 | 120 | 249 | 288 |
| Base content per 1 kb (bases) | 490 | 510 | 376 | 114 | 236 | 274 |
| Base content (%) | 49.0% | 51.0% | ||||
| ND3 (size: 349 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 172 | 177 | 117 | 55 | 98 | 79 |
| Base content per 1 kb (bases) | 493 | 507 | 335 | 158 | 281 | 226 |
| Base content (%) | 49.3% | 50.7% | ||||
| ND4 (size: 1381 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 643 | 738 | 456 | 187 | 367 | 371 |
| Base content per 1 kb (bases) | 466 | 534 | 330 | 135 | 266 | 269 |
| Base content (%) | 46.6% | 53.4% | ||||
| ND4L (size: 297 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 142 | 155 | 101 | 41 | 82 | 73 |
| Base content per 1 kb (bases) | 478 | 522 | 340 | 138 | 276 | 246 |
| Base content (%) | 47.8% | 52.2% | ||||
| ND5 (size: 1830 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 824 | 1006 | 591 | 233 | 485 | 521 |
| Base content per 1 kb (bases) | 450 | 550 | 323 | 127 | 265 | 285 |
| Base content (%) | 45.0% | 55.0% | ||||
| ND6 (size: 522 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 240 | 282 | 176 | 64 | 77 | 205 |
| Base content per 1 kb (bases) | 460 | 540 | 337 | 123 | 148 | 393 |
| Base content (%) | 46.0% | 54.0% | ||||
| ATP6 (size: 684 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (5.29%) 
Alanine (Ala, A)
n = 19 (8.37%) 
Serine (Ser, S)
n = 10 (4.41%) 
Threonine (Thr, T)
n = 20 (8.81%) 
Cysteine (Cys, C)
n = 0 (0%) 
Valine (Val, V)
n = 9 (3.96%) 
Leucine (Leu, L)
n = 57 (25.11%) 
Isoleucine (Ile, I)
n = 17 (7.49%) 
Methionine (Met, M)
n = 10 (4.41%) 
Proline (Pro, P)
n = 18 (7.93%) 
Phenylalanine (Phe, F)
n = 13 (5.73%) 
Tyrosine (Tyr, Y)
n = 4 (1.76%) 
Tryptophan (Trp, W)
n = 5 (2.2%) 
Aspartic acid (Asp, D)
n = 2 (0.88%) 
Glutamic acid (Glu, E)
n = 4 (1.76%) 
Asparagine (Asn, N)
n = 8 (3.52%) 
Glutamine (Gln, Q)
n = 8 (3.52%) 
Histidine (His, H)
n = 4 (1.76%) 
Lysine (Lys, K)
n = 3 (1.32%) 
Arginine (Arg, R)
n = 4 (1.76%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 9 | 8 | 7 | 13 | 9 | 15 | 10 | 9 | 7 | 1 | 4 | 3 | 2 | 0 | 7 | 6 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 0 | 0 | 3 | 5 | 11 | 0 | 1 | 5 | 5 | 1 | 7 | 4 | 7 | 0 | 4 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 9 | 5 | 2 | 1 | 5 | 2 | 1 | 0 | 1 | 0 | 4 | 2 | 1 | 1 | 7 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 3 | 1 | 1 | 1 | 3 | 0 | 0 | 3 | 1 | 0 | 0 | 0 | 1 | 0 | 3 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 46 | 81 | 59 | 42 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 22 | 66 | 34 | 106 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 22 | 73 | 81 | 52 | ||||||||||||
| ATP8 (size: 168 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: MPQLNPSPWLMLFLTTWLIFLYFLPSKIMNHAFPNLPSPKPTQNQKTTPFNWPWH* | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 1 (1.82%)
Serine (Ser, S)
n = 3 (5.45%)
Threonine (Thr, T)
n = 5 (9.09%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 0 (0%)
Leucine (Leu, L)
n = 8 (14.55%)
Isoleucine (Ile, I)
n = 2 (3.64%)
Methionine (Met, M)
n = 3 (5.45%)
Proline (Pro, P)
n = 10 (18.18%)
Phenylalanine (Phe, F)
n = 5 (9.09%)
Tyrosine (Tyr, Y)
n = 1 (1.82%)
Tryptophan (Trp, W)
n = 4 (7.27%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 0 (0%)
Asparagine (Asn, N)
n = 5 (9.09%)
Glutamine (Gln, Q)
n = 3 (5.45%)
Histidine (His, H)
n = 2 (3.64%)
Lysine (Lys, K)
n = 3 (5.45%)
Arginine (Arg, R)
n = 0 (0%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 2 | 0 | 2 | 0 | 4 | 2 | 0 | 1 | 2 | 1 | 0 | 0 | 0 | 0 | 1 | 4 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 4 | 3 | 0 | 0 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 1 | 4 | 0 | 1 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 2 | 1 | 1 | 4 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 2 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 2 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 1 | 21 | 19 | 15 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 5 | 18 | 15 | 18 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 6 | 22 | 20 | 8 | ||||||||||||
| COX1 (size: 1549 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 46 (8.93%)
Alanine (Ala, A)
n = 45 (8.74%)
Serine (Ser, S)
n = 29 (5.63%)
Threonine (Thr, T)
n = 35 (6.8%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 40 (7.77%)
Leucine (Leu, L)
n = 63 (12.23%)
Isoleucine (Ile, I)
n = 42 (8.16%)
Methionine (Met, M)
n = 26 (5.05%)
Proline (Pro, P)
n = 28 (5.44%)
Phenylalanine (Phe, F)
n = 43 (8.35%)
Tyrosine (Tyr, Y)
n = 17 (3.3%)
Tryptophan (Trp, W)
n = 17 (3.3%)
Aspartic acid (Asp, D)
n = 14 (2.72%)
Glutamic acid (Glu, E)
n = 10 (1.94%)
Asparagine (Asn, N)
n = 17 (3.3%)
Glutamine (Gln, Q)
n = 7 (1.36%)
Histidine (His, H)
n = 19 (3.69%)
Lysine (Lys, K)
n = 8 (1.55%)
Arginine (Arg, R)
n = 9 (1.75%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 25 | 17 | 16 | 13 | 12 | 29 | 3 | 6 | 7 | 0 | 7 | 18 | 12 | 3 | 17 | 26 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 10 | 0 | 1 | 7 | 25 | 12 | 1 | 8 | 16 | 14 | 8 | 9 | 12 | 6 | 1 | 6 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 7 | 17 | 5 | 4 | 11 | 10 | 1 | 0 | 3 | 4 | 13 | 5 | 0 | 4 | 13 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 16 | 7 | 3 | 4 | 10 | 7 | 1 | 1 | 1 | 6 | 1 | 0 | 0 | 0 | 0 | 12 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 155 | 120 | 131 | 110 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 76 | 134 | 92 | 214 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 42 | 201 | 161 | 112 | ||||||||||||
| COX2 (size: 691 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 7 (3.06%)
Alanine (Ala, A)
n = 17 (7.42%)
Serine (Ser, S)
n = 13 (5.68%)
Threonine (Thr, T)
n = 14 (6.11%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 23 (10.04%)
Leucine (Leu, L)
n = 31 (13.54%)
Isoleucine (Ile, I)
n = 15 (6.55%)
Methionine (Met, M)
n = 10 (4.37%)
Proline (Pro, P)
n = 13 (5.68%)
Phenylalanine (Phe, F)
n = 6 (2.62%)
Tyrosine (Tyr, Y)
n = 10 (4.37%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 15 (6.55%)
Glutamic acid (Glu, E)
n = 12 (5.24%)
Asparagine (Asn, N)
n = 7 (3.06%)
Glutamine (Gln, Q)
n = 9 (3.93%)
Histidine (His, H)
n = 9 (3.93%)
Lysine (Lys, K)
n = 5 (2.18%)
Arginine (Arg, R)
n = 7 (3.06%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 8 | 7 | 7 | 10 | 7 | 10 | 1 | 3 | 6 | 3 | 11 | 7 | 4 | 1 | 3 | 3 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 1 | 1 | 4 | 5 | 8 | 0 | 1 | 1 | 4 | 1 | 0 | 7 | 5 | 1 | 2 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 5 | 7 | 0 | 1 | 3 | 5 | 1 | 1 | 2 | 4 | 6 | 1 | 0 | 1 | 6 | 2 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 7 | 9 | 3 | 5 | 10 | 5 | 0 | 0 | 2 | 5 | 0 | 0 | 0 | 0 | 0 | 4 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 74 | 66 | 54 | 36 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 24 | 54 | 67 | 85 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 15 | 79 | 82 | 54 | ||||||||||||
| COX3 (size: 785 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 21 (8.08%)
Alanine (Ala, A)
n = 18 (6.92%)
Serine (Ser, S)
n = 15 (5.77%)
Threonine (Thr, T)
n = 22 (8.46%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 19 (7.31%)
Leucine (Leu, L)
n = 34 (13.08%)
Isoleucine (Ile, I)
n = 16 (6.15%)
Methionine (Met, M)
n = 7 (2.69%)
Proline (Pro, P)
n = 14 (5.38%)
Phenylalanine (Phe, F)
n = 21 (8.08%)
Tyrosine (Tyr, Y)
n = 12 (4.62%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 1 (0.38%)
Glutamine (Gln, Q)
n = 8 (3.08%)
Histidine (His, H)
n = 18 (6.92%)
Lysine (Lys, K)
n = 3 (1.15%)
Arginine (Arg, R)
n = 6 (2.31%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 5 | 11 | 5 | 4 | 10 | 12 | 1 | 4 | 6 | 2 | 4 | 8 | 4 | 3 | 9 | 12 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 1 | 3 | 8 | 6 | 1 | 3 | 12 | 4 | 2 | 2 | 8 | 4 | 0 | 2 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 9 | 9 | 2 | 1 | 5 | 5 | 0 | 0 | 4 | 3 | 9 | 0 | 3 | 1 | 0 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 15 | 5 | 3 | 1 | 4 | 3 | 0 | 1 | 0 | 5 | 0 | 0 | 0 | 0 | 0 | 12 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 71 | 73 | 53 | 64 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 44 | 65 | 55 | 97 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 19 | 116 | 84 | 42 | ||||||||||||
| CYTB (size: 1133 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 24 (6.38%)
Alanine (Ala, A)
n = 32 (8.51%)
Serine (Ser, S)
n = 22 (5.85%)
Threonine (Thr, T)
n = 22 (5.85%)
Cysteine (Cys, C)
n = 3 (0.8%)
Valine (Val, V)
n = 26 (6.91%)
Leucine (Leu, L)
n = 62 (16.49%)
Isoleucine (Ile, I)
n = 33 (8.78%)
Methionine (Met, M)
n = 9 (2.39%)
Proline (Pro, P)
n = 24 (6.38%)
Phenylalanine (Phe, F)
n = 27 (7.18%)
Tyrosine (Tyr, Y)
n = 15 (3.99%)
Tryptophan (Trp, W)
n = 11 (2.93%)
Aspartic acid (Asp, D)
n = 10 (2.66%)
Glutamic acid (Glu, E)
n = 5 (1.33%)
Asparagine (Asn, N)
n = 18 (4.79%)
Glutamine (Gln, Q)
n = 6 (1.6%)
Histidine (His, H)
n = 11 (2.93%)
Lysine (Lys, K)
n = 9 (2.39%)
Arginine (Arg, R)
n = 8 (2.13%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 10 | 23 | 6 | 11 | 20 | 18 | 6 | 6 | 4 | 2 | 6 | 10 | 8 | 2 | 6 | 21 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 0 | 3 | 8 | 10 | 14 | 0 | 3 | 13 | 3 | 5 | 4 | 9 | 8 | 3 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 10 | 7 | 0 | 3 | 8 | 9 | 0 | 1 | 1 | 4 | 11 | 0 | 1 | 4 | 14 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 8 | 4 | 1 | 2 | 8 | 5 | 4 | 0 | 2 | 6 | 0 | 0 | 0 | 0 | 0 | 11 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 97 | 104 | 93 | 83 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 48 | 98 | 74 | 157 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 27 | 171 | 109 | 70 | ||||||||||||
| ND1 (size: 975 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 16 (4.94%)
Alanine (Ala, A)
n = 35 (10.8%)
Serine (Ser, S)
n = 20 (6.17%)
Threonine (Thr, T)
n = 20 (6.17%)
Cysteine (Cys, C)
n = 1 (0.31%)
Valine (Val, V)
n = 21 (6.48%)
Leucine (Leu, L)
n = 65 (20.06%)
Isoleucine (Ile, I)
n = 22 (6.79%)
Methionine (Met, M)
n = 8 (2.47%)
Proline (Pro, P)
n = 24 (7.41%)
Phenylalanine (Phe, F)
n = 17 (5.25%)
Tyrosine (Tyr, Y)
n = 11 (3.4%)
Tryptophan (Trp, W)
n = 8 (2.47%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.4%)
Asparagine (Asn, N)
n = 13 (4.01%)
Glutamine (Gln, Q)
n = 8 (2.47%)
Histidine (His, H)
n = 5 (1.54%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 10 | 12 | 6 | 10 | 29 | 18 | 2 | 5 | 7 | 1 | 2 | 8 | 11 | 0 | 3 | 14 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 1 | 2 | 19 | 13 | 1 | 3 | 4 | 6 | 3 | 5 | 10 | 7 | 2 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 9 | 5 | 1 | 2 | 8 | 6 | 0 | 0 | 4 | 4 | 7 | 3 | 1 | 2 | 11 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 4 | 6 | 5 | 0 | 4 | 6 | 1 | 0 | 0 | 7 | 1 | 0 | 0 | 1 | 0 | 5 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 87 | 104 | 74 | 60 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 37 | 95 | 60 | 133 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 23 | 144 | 109 | 49 | ||||||||||||
| ND2 (size: 1053 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 17 (4.86%)
Alanine (Ala, A)
n = 35 (10.0%)
Serine (Ser, S)
n = 20 (5.71%)
Threonine (Thr, T)
n = 54 (15.43%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 8 (2.29%)
Leucine (Leu, L)
n = 79 (22.57%)
Isoleucine (Ile, I)
n = 27 (7.71%)
Methionine (Met, M)
n = 9 (2.57%)
Proline (Pro, P)
n = 22 (6.29%)
Phenylalanine (Phe, F)
n = 9 (2.57%)
Tyrosine (Tyr, Y)
n = 6 (1.71%)
Tryptophan (Trp, W)
n = 11 (3.14%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 3 (0.86%)
Asparagine (Asn, N)
n = 12 (3.43%)
Glutamine (Gln, Q)
n = 16 (4.57%)
Histidine (His, H)
n = 7 (2.0%)
Lysine (Lys, K)
n = 9 (2.57%)
Arginine (Arg, R)
n = 5 (1.43%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 12 | 15 | 8 | 17 | 27 | 20 | 6 | 8 | 14 | 2 | 2 | 4 | 2 | 0 | 5 | 4 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 0 | 0 | 6 | 20 | 9 | 0 | 1 | 8 | 6 | 2 | 6 | 11 | 3 | 2 | 4 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 30 | 18 | 2 | 3 | 9 | 3 | 0 | 1 | 4 | 2 | 4 | 0 | 1 | 4 | 8 | 2 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 5 | 3 | 0 | 0 | 1 | 8 | 1 | 1 | 0 | 3 | 1 | 0 | 0 | 1 | 0 | 11 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 64 | 120 | 116 | 51 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 38 | 126 | 55 | 132 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 18 | 150 | 117 | 66 | ||||||||||||
| ND3 (size: 1053 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 17 (4.86%)
Alanine (Ala, A)
n = 35 (10.0%)
Serine (Ser, S)
n = 20 (5.71%)
Threonine (Thr, T)
n = 54 (15.43%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 8 (2.29%)
Leucine (Leu, L)
n = 79 (22.57%)
Isoleucine (Ile, I)
n = 27 (7.71%)
Methionine (Met, M)
n = 9 (2.57%)
Proline (Pro, P)
n = 22 (6.29%)
Phenylalanine (Phe, F)
n = 9 (2.57%)
Tyrosine (Tyr, Y)
n = 6 (1.71%)
Tryptophan (Trp, W)
n = 11 (3.14%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 3 (0.86%)
Asparagine (Asn, N)
n = 12 (3.43%)
Glutamine (Gln, Q)
n = 16 (4.57%)
Histidine (His, H)
n = 7 (2.0%)
Lysine (Lys, K)
n = 9 (2.57%)
Arginine (Arg, R)
n = 5 (1.43%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 12 | 15 | 8 | 17 | 27 | 20 | 6 | 8 | 14 | 2 | 2 | 4 | 2 | 0 | 5 | 4 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 0 | 0 | 6 | 20 | 9 | 0 | 1 | 8 | 6 | 2 | 6 | 11 | 3 | 2 | 4 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 30 | 18 | 2 | 3 | 9 | 3 | 0 | 1 | 4 | 2 | 4 | 0 | 1 | 4 | 8 | 2 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 5 | 3 | 0 | 0 | 1 | 8 | 1 | 1 | 0 | 3 | 1 | 0 | 0 | 1 | 0 | 11 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 64 | 120 | 116 | 51 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 38 | 126 | 55 | 132 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 18 | 150 | 117 | 66 | ||||||||||||
| ND4 (size: 1381 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 25 (5.45%)
Alanine (Ala, A)
n = 37 (8.06%)
Serine (Ser, S)
n = 36 (7.84%)
Threonine (Thr, T)
n = 42 (9.15%)
Cysteine (Cys, C)
n = 4 (0.87%)
Valine (Val, V)
n = 10 (2.18%)
Leucine (Leu, L)
n = 92 (20.04%)
Isoleucine (Ile, I)
n = 40 (8.71%)
Methionine (Met, M)
n = 24 (5.23%)
Proline (Pro, P)
n = 27 (5.88%)
Phenylalanine (Phe, F)
n = 17 (3.7%)
Tyrosine (Tyr, Y)
n = 12 (2.61%)
Tryptophan (Trp, W)
n = 19 (4.14%)
Aspartic acid (Asp, D)
n = 4 (0.87%)
Glutamic acid (Glu, E)
n = 11 (2.4%)
Asparagine (Asn, N)
n = 15 (3.27%)
Glutamine (Gln, Q)
n = 10 (2.18%)
Histidine (His, H)
n = 16 (3.49%)
Lysine (Lys, K)
n = 8 (1.74%)
Arginine (Arg, R)
n = 11 (2.4%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 23 | 17 | 16 | 24 | 20 | 33 | 4 | 9 | 9 | 1 | 2 | 2 | 6 | 0 | 8 | 9 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 8 | 0 | 4 | 4 | 21 | 11 | 1 | 1 | 11 | 10 | 3 | 5 | 17 | 5 | 0 | 7 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 21 | 12 | 2 | 4 | 9 | 12 | 2 | 2 | 7 | 2 | 10 | 6 | 2 | 5 | 10 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 13 | 8 | 3 | 1 | 3 | 8 | 0 | 2 | 4 | 5 | 0 | 0 | 0 | 0 | 0 | 13 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 87 | 145 | 138 | 90 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 68 | 133 | 76 | 183 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 32 | 178 | 157 | 93 | ||||||||||||
| ND4L (size: 297 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 5 (5.1%)
Alanine (Ala, A)
n = 10 (10.2%)
Serine (Ser, S)
n = 9 (9.18%)
Threonine (Thr, T)
n = 10 (10.2%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 3 (3.06%)
Leucine (Leu, L)
n = 21 (21.43%)
Isoleucine (Ile, I)
n = 3 (3.06%)
Methionine (Met, M)
n = 6 (6.12%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 8 (8.16%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 3 (3.06%)
Glutamine (Gln, Q)
n = 4 (4.08%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 3 (3.06%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 1 | 2 | 5 | 3 | 5 | 9 | 2 | 2 | 4 | 0 | 1 | 1 | 1 | 0 | 3 | 5 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 2 | 1 | 4 | 5 | 1 | 0 | 1 | 2 | 2 | 0 | 0 | 1 | 1 | 0 | 2 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 6 | 2 | 0 | 1 | 2 | 3 | 1 | 0 | 2 | 0 | 0 | 1 | 0 | 0 | 3 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 1 | 1 | 0 | 1 | 0 | 0 | 0 | 1 | 2 | 0 | 0 | 0 | 1 | 0 | 0 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 21 | 32 | 24 | 22 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 14 | 29 | 15 | 41 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 6 | 40 | 34 | 19 | ||||||||||||
| ND5 (size: 1830 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 30 (4.93%)
Alanine (Ala, A)
n = 51 (8.37%)
Serine (Ser, S)
n = 46 (7.55%)
Threonine (Thr, T)
n = 64 (10.51%)
Cysteine (Cys, C)
n = 6 (0.99%)
Valine (Val, V)
n = 25 (4.11%)
Leucine (Leu, L)
n = 98 (16.09%)
Isoleucine (Ile, I)
n = 54 (8.87%)
Methionine (Met, M)
n = 24 (3.94%)
Proline (Pro, P)
n = 32 (5.25%)
Phenylalanine (Phe, F)
n = 40 (6.57%)
Tyrosine (Tyr, Y)
n = 11 (1.81%)
Tryptophan (Trp, W)
n = 14 (2.3%)
Aspartic acid (Asp, D)
n = 10 (1.64%)
Glutamic acid (Glu, E)
n = 12 (1.97%)
Asparagine (Asn, N)
n = 30 (4.93%)
Glutamine (Gln, Q)
n = 16 (2.63%)
Histidine (His, H)
n = 13 (2.13%)
Lysine (Lys, K)
n = 23 (3.78%)
Arginine (Arg, R)
n = 10 (1.64%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 28 | 26 | 18 | 22 | 26 | 36 | 4 | 10 | 14 | 2 | 7 | 9 | 8 | 1 | 17 | 23 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 6 | 2 | 4 | 6 | 25 | 17 | 3 | 6 | 16 | 5 | 3 | 5 | 20 | 7 | 0 | 11 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 33 | 18 | 2 | 6 | 11 | 10 | 4 | 3 | 12 | 6 | 5 | 1 | 0 | 7 | 23 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 12 | 10 | 2 | 2 | 8 | 21 | 2 | 2 | 1 | 7 | 0 | 0 | 0 | 1 | 0 | 13 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 128 | 159 | 210 | 113 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 75 | 178 | 116 | 241 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 30 | 254 | 195 | 131 | ||||||||||||
| ND6 (size: 522 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 22 (12.72%)
Alanine (Ala, A)
n = 15 (8.67%)
Serine (Ser, S)
n = 13 (7.51%)
Threonine (Thr, T)
n = 5 (2.89%)
Cysteine (Cys, C)
n = 1 (0.58%)
Valine (Val, V)
n = 31 (17.92%)
Leucine (Leu, L)
n = 29 (16.76%)
Isoleucine (Ile, I)
n = 3 (1.73%)
Methionine (Met, M)
n = 7 (4.05%)
Proline (Pro, P)
n = 4 (2.31%)
Phenylalanine (Phe, F)
n = 11 (6.36%)
Tyrosine (Tyr, Y)
n = 10 (5.78%)
Tryptophan (Trp, W)
n = 7 (4.05%)
Aspartic acid (Asp, D)
n = 2 (1.16%)
Glutamic acid (Glu, E)
n = 6 (3.47%)
Asparagine (Asn, N)
n = 3 (1.73%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 4 (2.31%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 3 | 0 | 4 | 1 | 0 | 4 | 2 | 11 | 0 | 0 | 7 | 2 | 6 | 16 | 11 | 0 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 1 | 0 | 10 | 0 | 2 | 3 | 4 | 7 | 1 | 10 | 3 | 0 | 0 | 1 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 0 | 0 | 2 | 6 | 1 | 0 | 3 | 3 | 0 | 7 | 3 | 5 | 11 | 1 | 2 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 0 | 1 | 5 | 2 | 0 | 0 | 0 | 0 | 0 | 2 | 2 | 0 | 0 | 1 | 0 | 2 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 76 | 15 | 21 | 62 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 37 | 34 | 22 | 81 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 63 | 15 | 34 | 62 | ||||||||||||
| Total protein-coding genes (size: 11417 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 230 (6.05%)
Alanine (Ala, A)
n = 327 (8.6%)
Serine (Ser, S)
n = 246 (6.47%)
Threonine (Thr, T)
n = 319 (8.39%)
Cysteine (Cys, C)
n = 23 (0.6%)
Valine (Val, V)
n = 216 (5.68%)
Leucine (Leu, L)
n = 667 (17.54%)
Isoleucine (Ile, I)
n = 283 (7.44%)
Methionine (Met, M)
n = 147 (3.87%)
Proline (Pro, P)
n = 226 (5.94%)
Phenylalanine (Phe, F)
n = 225 (5.92%)
Tyrosine (Tyr, Y)
n = 111 (2.92%)
Tryptophan (Trp, W)
n = 119 (3.13%)
Aspartic acid (Asp, D)
n = 70 (1.84%)
Glutamic acid (Glu, E)
n = 90 (2.37%)
Asparagine (Asn, N)
n = 134 (3.52%)
Glutamine (Gln, Q)
n = 99 (2.6%)
Histidine (His, H)
n = 108 (2.84%)
Lysine (Lys, K)
n = 79 (2.08%)
Arginine (Arg, R)
n = 77 (2.03%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 139 | 144 | 101 | 131 | 179 | 213 | 46 | 76 | 84 | 15 | 53 | 72 | 64 | 27 | 93 | 132 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 46 | 6 | 17 | 59 | 150 | 108 | 10 | 34 | 97 | 61 | 38 | 51 | 109 | 56 | 10 | 51 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 141 | 109 | 18 | 34 | 75 | 69 | 13 | 11 | 44 | 38 | 73 | 26 | 22 | 33 | 101 | 20 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 88 | 62 | 28 | 18 | 52 | 69 | 10 | 8 | 14 | 49 | 6 | 0 | 0 | 6 | 1 | 93 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 933 | 1079 | 1017 | 774 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 504 | 1063 | 698 | 1538 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 316 | 1488 | 1220 | 779 | ||||||||||||
Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​T​r​i​n​e​c​t​e​s​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​a​c​u​l​a​t​u​s​"​[​O​r​g​a​n​i​s​m​]​)​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
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If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.
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