Viewing data for Mus musculus
| Scientific name | Mus musculus |
| Common name | House mouse |
| Maximum lifespan | 4.00 years (Mus musculus@AnAge) |
| Total mtDNA (size: 16299 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 5989 | 10310 | 3976 | 2013 | 4681 | 5629 |
| Base content per 1 kb (bases) | 367 | 633 | 244 | 124 | 287 | 345 |
| Base content (%) | 36.7% | 63.3% | ||||
| Total protein-coding genes (size: 11338 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 4235 | 7103 | 2963 | 1272 | 3297 | 3806 |
| Base content per 1 kb (bases) | 374 | 626 | 261 | 112 | 291 | 336 |
| Base content (%) | 37.4% | 62.6% | ||||
| D-loop (size: 877 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 323 | 554 | 219 | 104 | 257 | 297 |
| Base content per 1 kb (bases) | 368 | 632 | 250 | 119 | 293 | 339 |
| Base content (%) | 36.8% | 63.2% | ||||
| Total tRNA-coding genes (size: 1497 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 512 | 985 | 291 | 221 | 443 | 542 |
| Base content per 1 kb (bases) | 342 | 658 | 194 | 148 | 296 | 362 |
| Base content (%) | 34.2% | 65.8% | ||||
| Total rRNA-coding genes (size: 2537 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 902 | 1635 | 492 | 410 | 669 | 966 |
| Base content per 1 kb (bases) | 356 | 644 | 194 | 162 | 264 | 381 |
| Base content (%) | 35.6% | 64.4% | ||||
| 12S rRNA gene (size: 955 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 342 | 613 | 188 | 154 | 252 | 361 |
| Base content per 1 kb (bases) | 358 | 642 | 197 | 161 | 264 | 378 |
| Base content (%) | 35.8% | 64.2% | ||||
| 16S rRNA gene (size: 1582 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 560 | 1022 | 304 | 256 | 417 | 605 |
| Base content per 1 kb (bases) | 354 | 646 | 192 | 162 | 264 | 382 |
| Base content (%) | 35.4% | 64.6% | ||||
| ATP6 (size: 681 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 245 | 436 | 179 | 66 | 204 | 232 |
| Base content per 1 kb (bases) | 360 | 640 | 263 | 97 | 300 | 341 |
| Base content (%) | 36.0% | 64.0% | ||||
| ATP8 (size: 204 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 65 | 139 | 53 | 12 | 56 | 83 |
| Base content per 1 kb (bases) | 319 | 681 | 260 | 59 | 275 | 407 |
| Base content (%) | 31.9% | 68.1% | ||||
| COX1 (size: 1545 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 616 | 929 | 367 | 249 | 473 | 456 |
| Base content per 1 kb (bases) | 399 | 601 | 238 | 161 | 306 | 295 |
| Base content (%) | 39.9% | 60.1% | ||||
| COX2 (size: 684 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 264 | 420 | 173 | 91 | 189 | 231 |
| Base content per 1 kb (bases) | 386 | 614 | 253 | 133 | 276 | 338 |
| Base content (%) | 38.6% | 61.4% | ||||
| COX3 (size: 784 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 305 | 479 | 197 | 108 | 245 | 234 |
| Base content per 1 kb (bases) | 389 | 611 | 251 | 138 | 313 | 298 |
| Base content (%) | 38.9% | 61.1% | ||||
| CYTB (size: 1144 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 447 | 697 | 308 | 139 | 334 | 363 |
| Base content per 1 kb (bases) | 391 | 609 | 269 | 122 | 292 | 317 |
| Base content (%) | 39.1% | 60.9% | ||||
| ND1 (size: 957 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 360 | 597 | 249 | 111 | 288 | 309 |
| Base content per 1 kb (bases) | 376 | 624 | 260 | 116 | 301 | 323 |
| Base content (%) | 37.6% | 62.4% | ||||
| ND2 (size: 1038 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 371 | 667 | 288 | 83 | 284 | 383 |
| Base content per 1 kb (bases) | 357 | 643 | 277 | 80 | 274 | 369 |
| Base content (%) | 35.7% | 64.3% | ||||
| ND3 (size: 348 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 115 | 233 | 77 | 38 | 114 | 119 |
| Base content per 1 kb (bases) | 330 | 670 | 221 | 109 | 328 | 342 |
| Base content (%) | 33.0% | 67.0% | ||||
| ND4 (size: 1378 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 491 | 887 | 356 | 135 | 407 | 480 |
| Base content per 1 kb (bases) | 356 | 644 | 258 | 98 | 295 | 348 |
| Base content (%) | 35.6% | 64.4% | ||||
| ND4L (size: 297 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 122 | 175 | 89 | 33 | 86 | 89 |
| Base content per 1 kb (bases) | 411 | 589 | 300 | 111 | 290 | 300 |
| Base content (%) | 41.1% | 58.9% | ||||
| ND5 (size: 1824 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 677 | 1147 | 495 | 182 | 521 | 626 |
| Base content per 1 kb (bases) | 371 | 629 | 271 | 100 | 286 | 343 |
| Base content (%) | 37.1% | 62.9% | ||||
| ND6 (size: 519 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 177 | 342 | 146 | 31 | 115 | 227 |
| Base content per 1 kb (bases) | 341 | 659 | 281 | 60 | 222 | 437 |
| Base content (%) | 34.1% | 65.9% | ||||
| ATP6 (size: 681 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
Amino acid frequencies:
Glycine (Gly, G)
n = 10 (4.42%) 
Alanine (Ala, A)
n = 15 (6.64%) 
Serine (Ser, S)
n = 15 (6.64%) 
Threonine (Thr, T)
n = 22 (9.73%) 
Cysteine (Cys, C)
n = 0 (0%) 
Valine (Val, V)
n = 10 (4.42%) 
Leucine (Leu, L)
n = 39 (17.26%) 
Isoleucine (Ile, I)
n = 29 (12.83%) 
Methionine (Met, M)
n = 14 (6.19%) 
Proline (Pro, P)
n = 14 (6.19%) 
Phenylalanine (Phe, F)
n = 14 (6.19%) 
Tyrosine (Tyr, Y)
n = 2 (0.88%) 
Tryptophan (Trp, W)
n = 3 (1.33%) 
Aspartic acid (Asp, D)
n = 1 (0.44%) 
Glutamic acid (Glu, E)
n = 3 (1.33%) 
Asparagine (Asn, N)
n = 9 (3.98%) 
Glutamine (Gln, Q)
n = 6 (2.65%) 
Histidine (His, H)
n = 9 (3.98%) 
Lysine (Lys, K)
n = 6 (2.65%) 
Arginine (Arg, R)
n = 5 (2.21%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 21 | 8 | 11 | 7 | 4 | 21 | 0 | 7 | 6 | 0 | 3 | 1 | 6 | 0 | 7 | 7 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 0 | 0 | 4 | 6 | 5 | 0 | 0 | 2 | 8 | 0 | 2 | 0 | 12 | 0 | 4 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 5 | 13 | 0 | 1 | 3 | 6 | 0 | 1 | 4 | 1 | 1 | 0 | 0 | 5 | 4 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 6 | 3 | 0 | 1 | 0 | 6 | 0 | 1 | 1 | 2 | 1 | 0 | 0 | 1 | 0 | 3 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 39 | 66 | 85 | 37 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 23 | 61 | 37 | 106 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 4 | 52 | 110 | 61 | ||||||||||||
| ATP8 (size: 204 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: MPQLDTSTWFITIISSMITLFILFQLKVSSQTFPLAPSPKSLTTMKVKTPWELKWTKIYLPHSLPQQ* | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 1 (1.49%)
Serine (Ser, S)
n = 8 (11.94%)
Threonine (Thr, T)
n = 9 (13.43%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 2 (2.99%)
Leucine (Leu, L)
n = 9 (13.43%)
Isoleucine (Ile, I)
n = 6 (8.96%)
Methionine (Met, M)
n = 3 (4.48%)
Proline (Pro, P)
n = 7 (10.45%)
Phenylalanine (Phe, F)
n = 4 (5.97%)
Tyrosine (Tyr, Y)
n = 1 (1.49%)
Tryptophan (Trp, W)
n = 3 (4.48%)
Aspartic acid (Asp, D)
n = 1 (1.49%)
Glutamic acid (Glu, E)
n = 1 (1.49%)
Asparagine (Asn, N)
n = 0 (0%)
Glutamine (Gln, Q)
n = 5 (7.46%)
Histidine (His, H)
n = 1 (1.49%)
Lysine (Lys, K)
n = 6 (8.96%)
Arginine (Arg, R)
n = 0 (0%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 2 | 4 | 2 | 0 | 0 | 4 | 1 | 3 | 5 | 0 | 0 | 1 | 1 | 0 | 3 | 1 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 3 | 1 | 3 | 0 | 0 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 3 | 5 | 1 | 0 | 0 | 8 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 0 | 1 | 0 | 1 | 0 | 6 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 3 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 5 | 18 | 24 | 21 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 3 | 25 | 16 | 24 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 4 | 10 | 43 | 11 | ||||||||||||
| COX1 (size: 1545 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 46 (8.95%)
Alanine (Ala, A)
n = 43 (8.37%)
Serine (Ser, S)
n = 33 (6.42%)
Threonine (Thr, T)
n = 36 (7.0%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 39 (7.59%)
Leucine (Leu, L)
n = 58 (11.28%)
Isoleucine (Ile, I)
n = 37 (7.2%)
Methionine (Met, M)
n = 31 (6.03%)
Proline (Pro, P)
n = 28 (5.45%)
Phenylalanine (Phe, F)
n = 43 (8.37%)
Tyrosine (Tyr, Y)
n = 19 (3.7%)
Tryptophan (Trp, W)
n = 17 (3.31%)
Aspartic acid (Asp, D)
n = 16 (3.11%)
Glutamic acid (Glu, E)
n = 9 (1.75%)
Asparagine (Asn, N)
n = 16 (3.11%)
Glutamine (Gln, Q)
n = 6 (1.17%)
Histidine (His, H)
n = 18 (3.5%)
Lysine (Lys, K)
n = 10 (1.95%)
Arginine (Arg, R)
n = 8 (1.56%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 26 | 11 | 26 | 11 | 8 | 23 | 3 | 13 | 4 | 2 | 9 | 5 | 20 | 5 | 21 | 22 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 5 | 0 | 1 | 10 | 15 | 17 | 1 | 8 | 9 | 27 | 2 | 5 | 2 | 21 | 0 | 9 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 9 | 18 | 0 | 5 | 5 | 19 | 1 | 2 | 1 | 9 | 10 | 0 | 0 | 9 | 7 | 8 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 10 | 7 | 2 | 8 | 8 | 10 | 0 | 1 | 2 | 5 | 0 | 0 | 0 | 1 | 0 | 17 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 153 | 105 | 133 | 124 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 75 | 137 | 95 | 208 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 21 | 125 | 228 | 141 | ||||||||||||
| COX2 (size: 684 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 9 (3.96%)
Serine (Ser, S)
n = 18 (7.93%)
Threonine (Thr, T)
n = 16 (7.05%)
Cysteine (Cys, C)
n = 3 (1.32%)
Valine (Val, V)
n = 14 (6.17%)
Leucine (Leu, L)
n = 31 (13.66%)
Isoleucine (Ile, I)
n = 19 (8.37%)
Methionine (Met, M)
n = 16 (7.05%)
Proline (Pro, P)
n = 14 (6.17%)
Phenylalanine (Phe, F)
n = 7 (3.08%)
Tyrosine (Tyr, Y)
n = 10 (4.41%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 11 (4.85%)
Glutamic acid (Glu, E)
n = 14 (6.17%)
Asparagine (Asn, N)
n = 9 (3.96%)
Glutamine (Gln, Q)
n = 6 (2.64%)
Histidine (His, H)
n = 6 (2.64%)
Lysine (Lys, K)
n = 5 (2.2%)
Arginine (Arg, R)
n = 6 (2.64%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 11 | 8 | 13 | 4 | 3 | 17 | 2 | 5 | 6 | 0 | 6 | 5 | 3 | 0 | 2 | 5 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 1 | 2 | 3 | 3 | 3 | 0 | 2 | 2 | 2 | 2 | 2 | 4 | 8 | 0 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 3 | 10 | 0 | 5 | 3 | 5 | 1 | 0 | 4 | 7 | 3 | 0 | 0 | 2 | 7 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 13 | 1 | 5 | 6 | 5 | 0 | 1 | 1 | 4 | 0 | 0 | 0 | 1 | 0 | 5 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 56 | 58 | 69 | 45 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 26 | 53 | 62 | 87 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 9 | 62 | 100 | 57 | ||||||||||||
| COX3 (size: 784 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 21 (8.08%)
Alanine (Ala, A)
n = 13 (5.0%)
Serine (Ser, S)
n = 21 (8.08%)
Threonine (Thr, T)
n = 21 (8.08%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 16 (6.15%)
Leucine (Leu, L)
n = 34 (13.08%)
Isoleucine (Ile, I)
n = 17 (6.54%)
Methionine (Met, M)
n = 9 (3.46%)
Proline (Pro, P)
n = 10 (3.85%)
Phenylalanine (Phe, F)
n = 22 (8.46%)
Tyrosine (Tyr, Y)
n = 12 (4.62%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 4 (1.54%)
Glutamic acid (Glu, E)
n = 7 (2.69%)
Asparagine (Asn, N)
n = 7 (2.69%)
Glutamine (Gln, Q)
n = 7 (2.69%)
Histidine (His, H)
n = 17 (6.54%)
Lysine (Lys, K)
n = 4 (1.54%)
Arginine (Arg, R)
n = 5 (1.92%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 13 | 4 | 7 | 9 | 6 | 17 | 0 | 2 | 7 | 0 | 3 | 4 | 9 | 0 | 8 | 14 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 2 | 3 | 4 | 5 | 1 | 6 | 3 | 12 | 0 | 3 | 0 | 7 | 0 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 6 | 10 | 0 | 3 | 2 | 12 | 1 | 1 | 2 | 7 | 5 | 0 | 0 | 5 | 2 | 9 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 8 | 7 | 0 | 2 | 2 | 4 | 0 | 1 | 0 | 4 | 0 | 0 | 0 | 0 | 0 | 12 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 61 | 71 | 61 | 68 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 43 | 62 | 58 | 98 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 4 | 64 | 115 | 78 | ||||||||||||
| CYTB (size: 1144 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 25 (6.58%)
Alanine (Ala, A)
n = 23 (6.05%)
Serine (Ser, S)
n = 23 (6.05%)
Threonine (Thr, T)
n = 24 (6.32%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 16 (4.21%)
Leucine (Leu, L)
n = 54 (14.21%)
Isoleucine (Ile, I)
n = 45 (11.84%)
Methionine (Met, M)
n = 19 (5.0%)
Proline (Pro, P)
n = 23 (6.05%)
Phenylalanine (Phe, F)
n = 29 (7.63%)
Tyrosine (Tyr, Y)
n = 16 (4.21%)
Tryptophan (Trp, W)
n = 11 (2.89%)
Aspartic acid (Asp, D)
n = 11 (2.89%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 16 (4.21%)
Glutamine (Gln, Q)
n = 6 (1.58%)
Histidine (His, H)
n = 13 (3.42%)
Lysine (Lys, K)
n = 10 (2.63%)
Arginine (Arg, R)
n = 8 (2.11%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 23 | 22 | 18 | 8 | 5 | 24 | 1 | 14 | 6 | 0 | 2 | 7 | 7 | 0 | 12 | 17 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 1 | 2 | 2 | 14 | 6 | 1 | 4 | 5 | 12 | 4 | 2 | 4 | 17 | 0 | 0 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 8 | 16 | 0 | 1 | 3 | 18 | 0 | 0 | 1 | 8 | 8 | 0 | 2 | 3 | 13 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 10 | 6 | 0 | 4 | 7 | 9 | 1 | 0 | 2 | 6 | 0 | 0 | 0 | 0 | 0 | 11 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 81 | 88 | 115 | 97 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 48 | 92 | 78 | 163 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 10 | 128 | 170 | 73 | ||||||||||||
| ND1 (size: 957 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 13 (4.09%)
Alanine (Ala, A)
n = 25 (7.86%)
Serine (Ser, S)
n = 24 (7.55%)
Threonine (Thr, T)
n = 22 (6.92%)
Cysteine (Cys, C)
n = 1 (0.31%)
Valine (Val, V)
n = 12 (3.77%)
Leucine (Leu, L)
n = 58 (18.24%)
Isoleucine (Ile, I)
n = 26 (8.18%)
Methionine (Met, M)
n = 20 (6.29%)
Proline (Pro, P)
n = 22 (6.92%)
Phenylalanine (Phe, F)
n = 20 (6.29%)
Tyrosine (Tyr, Y)
n = 14 (4.4%)
Tryptophan (Trp, W)
n = 9 (2.83%)
Aspartic acid (Asp, D)
n = 3 (0.94%)
Glutamic acid (Glu, E)
n = 12 (3.77%)
Asparagine (Asn, N)
n = 13 (4.09%)
Glutamine (Gln, Q)
n = 6 (1.89%)
Histidine (His, H)
n = 4 (1.26%)
Lysine (Lys, K)
n = 6 (1.89%)
Arginine (Arg, R)
n = 8 (2.52%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 18 | 8 | 19 | 5 | 4 | 27 | 2 | 20 | 6 | 0 | 4 | 1 | 6 | 1 | 10 | 10 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 1 | 0 | 3 | 11 | 9 | 2 | 1 | 3 | 6 | 3 | 3 | 6 | 13 | 0 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 5 | 14 | 0 | 5 | 4 | 13 | 0 | 1 | 1 | 3 | 11 | 1 | 0 | 4 | 9 | 2 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 2 | 11 | 1 | 1 | 2 | 6 | 0 | 1 | 3 | 3 | 1 | 0 | 0 | 0 | 1 | 8 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 65 | 78 | 89 | 87 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 33 | 91 | 59 | 136 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 13 | 80 | 161 | 65 | ||||||||||||
| ND2 (size: 1038 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.06%)
Alanine (Ala, A)
n = 23 (6.67%)
Serine (Ser, S)
n = 22 (6.38%)
Threonine (Thr, T)
n = 35 (10.14%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 5 (1.45%)
Leucine (Leu, L)
n = 62 (17.97%)
Isoleucine (Ile, I)
n = 38 (11.01%)
Methionine (Met, M)
n = 36 (10.43%)
Proline (Pro, P)
n = 20 (5.8%)
Phenylalanine (Phe, F)
n = 14 (4.06%)
Tyrosine (Tyr, Y)
n = 9 (2.61%)
Tryptophan (Trp, W)
n = 8 (2.32%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 4 (1.16%)
Asparagine (Asn, N)
n = 22 (6.38%)
Glutamine (Gln, Q)
n = 12 (3.48%)
Histidine (His, H)
n = 4 (1.16%)
Lysine (Lys, K)
n = 13 (3.77%)
Arginine (Arg, R)
n = 3 (0.87%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 19 | 19 | 36 | 13 | 8 | 29 | 4 | 8 | 12 | 0 | 0 | 1 | 4 | 0 | 4 | 10 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 0 | 1 | 0 | 3 | 9 | 11 | 0 | 2 | 3 | 7 | 2 | 4 | 5 | 10 | 1 | 11 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 7 | 17 | 0 | 3 | 6 | 10 | 0 | 0 | 3 | 5 | 4 | 0 | 0 | 4 | 18 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 4 | 4 | 0 | 0 | 0 | 13 | 0 | 0 | 1 | 2 | 0 | 0 | 0 | 0 | 1 | 8 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 46 | 93 | 147 | 60 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 29 | 97 | 65 | 155 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 8 | 98 | 171 | 69 | ||||||||||||
| ND3 (size: 1038 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.06%)
Alanine (Ala, A)
n = 23 (6.67%)
Serine (Ser, S)
n = 22 (6.38%)
Threonine (Thr, T)
n = 35 (10.14%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 5 (1.45%)
Leucine (Leu, L)
n = 62 (17.97%)
Isoleucine (Ile, I)
n = 38 (11.01%)
Methionine (Met, M)
n = 36 (10.43%)
Proline (Pro, P)
n = 20 (5.8%)
Phenylalanine (Phe, F)
n = 14 (4.06%)
Tyrosine (Tyr, Y)
n = 9 (2.61%)
Tryptophan (Trp, W)
n = 8 (2.32%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 4 (1.16%)
Asparagine (Asn, N)
n = 22 (6.38%)
Glutamine (Gln, Q)
n = 12 (3.48%)
Histidine (His, H)
n = 4 (1.16%)
Lysine (Lys, K)
n = 13 (3.77%)
Arginine (Arg, R)
n = 3 (0.87%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 19 | 19 | 36 | 13 | 8 | 29 | 4 | 8 | 12 | 0 | 0 | 1 | 4 | 0 | 4 | 10 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 0 | 1 | 0 | 3 | 9 | 11 | 0 | 2 | 3 | 7 | 2 | 4 | 5 | 10 | 1 | 11 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 7 | 17 | 0 | 3 | 6 | 10 | 0 | 0 | 3 | 5 | 4 | 0 | 0 | 4 | 18 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 4 | 4 | 0 | 0 | 0 | 13 | 0 | 0 | 1 | 2 | 0 | 0 | 0 | 0 | 1 | 8 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 46 | 93 | 147 | 60 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 29 | 97 | 65 | 155 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 8 | 98 | 171 | 69 | ||||||||||||
| ND4 (size: 1378 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 17 (3.71%)
Alanine (Ala, A)
n = 27 (5.9%)
Serine (Ser, S)
n = 43 (9.39%)
Threonine (Thr, T)
n = 40 (8.73%)
Cysteine (Cys, C)
n = 3 (0.66%)
Valine (Val, V)
n = 8 (1.75%)
Leucine (Leu, L)
n = 86 (18.78%)
Isoleucine (Ile, I)
n = 54 (11.79%)
Methionine (Met, M)
n = 37 (8.08%)
Proline (Pro, P)
n = 20 (4.37%)
Phenylalanine (Phe, F)
n = 17 (3.71%)
Tyrosine (Tyr, Y)
n = 14 (3.06%)
Tryptophan (Trp, W)
n = 13 (2.84%)
Aspartic acid (Asp, D)
n = 6 (1.31%)
Glutamic acid (Glu, E)
n = 8 (1.75%)
Asparagine (Asn, N)
n = 21 (4.59%)
Glutamine (Gln, Q)
n = 11 (2.4%)
Histidine (His, H)
n = 11 (2.4%)
Lysine (Lys, K)
n = 14 (3.06%)
Arginine (Arg, R)
n = 9 (1.97%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 37 | 17 | 33 | 13 | 8 | 42 | 4 | 18 | 11 | 0 | 4 | 1 | 3 | 0 | 9 | 8 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 0 | 3 | 7 | 7 | 13 | 0 | 3 | 3 | 8 | 3 | 2 | 5 | 13 | 0 | 6 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 17 | 17 | 0 | 3 | 6 | 21 | 0 | 5 | 8 | 7 | 7 | 1 | 1 | 5 | 16 | 4 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 7 | 8 | 0 | 2 | 4 | 14 | 0 | 1 | 4 | 3 | 1 | 0 | 0 | 0 | 0 | 12 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 66 | 118 | 179 | 96 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 55 | 117 | 85 | 202 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 14 | 121 | 216 | 108 | ||||||||||||
| ND4L (size: 297 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 6 (6.12%)
Serine (Ser, S)
n = 13 (13.27%)
Threonine (Thr, T)
n = 9 (9.18%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 7 (7.14%)
Leucine (Leu, L)
n = 19 (19.39%)
Isoleucine (Ile, I)
n = 4 (4.08%)
Methionine (Met, M)
n = 8 (8.16%)
Proline (Pro, P)
n = 3 (3.06%)
Phenylalanine (Phe, F)
n = 6 (6.12%)
Tyrosine (Tyr, Y)
n = 2 (2.04%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 6 (6.12%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 1 (1.02%)
Lysine (Lys, K)
n = 1 (1.02%)
Arginine (Arg, R)
n = 1 (1.02%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 1 | 3 | 7 | 2 | 2 | 10 | 1 | 4 | 2 | 0 | 2 | 1 | 4 | 0 | 2 | 4 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 0 | 3 | 1 | 3 | 2 | 0 | 0 | 1 | 2 | 1 | 0 | 1 | 2 | 0 | 2 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 3 | 3 | 1 | 2 | 6 | 4 | 0 | 0 | 1 | 0 | 2 | 0 | 0 | 1 | 5 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 1 | 2 | 0 | 1 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 20 | 22 | 29 | 28 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 9 | 30 | 16 | 44 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 4 | 37 | 44 | 14 | ||||||||||||
| ND5 (size: 1824 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 25 (4.12%)
Alanine (Ala, A)
n = 32 (5.27%)
Serine (Ser, S)
n = 54 (8.9%)
Threonine (Thr, T)
n = 58 (9.56%)
Cysteine (Cys, C)
n = 6 (0.99%)
Valine (Val, V)
n = 15 (2.47%)
Leucine (Leu, L)
n = 90 (14.83%)
Isoleucine (Ile, I)
n = 72 (11.86%)
Methionine (Met, M)
n = 38 (6.26%)
Proline (Pro, P)
n = 26 (4.28%)
Phenylalanine (Phe, F)
n = 46 (7.58%)
Tyrosine (Tyr, Y)
n = 13 (2.14%)
Tryptophan (Trp, W)
n = 13 (2.14%)
Aspartic acid (Asp, D)
n = 12 (1.98%)
Glutamic acid (Glu, E)
n = 11 (1.81%)
Asparagine (Asn, N)
n = 40 (6.59%)
Glutamine (Gln, Q)
n = 11 (1.81%)
Histidine (His, H)
n = 13 (2.14%)
Lysine (Lys, K)
n = 23 (3.79%)
Arginine (Arg, R)
n = 9 (1.48%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 39 | 33 | 36 | 10 | 15 | 40 | 7 | 16 | 10 | 1 | 3 | 5 | 5 | 2 | 16 | 30 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 2 | 4 | 6 | 10 | 16 | 0 | 0 | 7 | 15 | 3 | 1 | 5 | 19 | 1 | 9 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 19 | 28 | 2 | 9 | 8 | 27 | 0 | 1 | 9 | 6 | 7 | 3 | 2 | 15 | 25 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 12 | 10 | 1 | 0 | 12 | 23 | 0 | 1 | 3 | 5 | 0 | 0 | 0 | 1 | 0 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 95 | 131 | 241 | 141 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 63 | 160 | 124 | 261 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 24 | 204 | 261 | 119 | ||||||||||||
| ND6 (size: 519 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 26 (15.12%)
Alanine (Ala, A)
n = 8 (4.65%)
Serine (Ser, S)
n = 8 (4.65%)
Threonine (Thr, T)
n = 6 (3.49%)
Cysteine (Cys, C)
n = 4 (2.33%)
Valine (Val, V)
n = 20 (11.63%)
Leucine (Leu, L)
n = 26 (15.12%)
Isoleucine (Ile, I)
n = 14 (8.14%)
Methionine (Met, M)
n = 11 (6.4%)
Proline (Pro, P)
n = 3 (1.74%)
Phenylalanine (Phe, F)
n = 11 (6.4%)
Tyrosine (Tyr, Y)
n = 9 (5.23%)
Tryptophan (Trp, W)
n = 5 (2.91%)
Aspartic acid (Asp, D)
n = 6 (3.49%)
Glutamic acid (Glu, E)
n = 8 (4.65%)
Asparagine (Asn, N)
n = 5 (2.91%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 1 (0.58%)
Arginine (Arg, R)
n = 1 (0.58%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 13 | 1 | 4 | 3 | 0 | 0 | 0 | 15 | 0 | 0 | 12 | 0 | 5 | 3 | 11 | 0 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 7 | 4 | 0 | 4 | 0 | 2 | 2 | 9 | 0 | 8 | 9 | 2 | 0 | 1 | 0 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 0 | 0 | 1 | 2 | 0 | 2 | 1 | 3 | 0 | 9 | 0 | 2 | 8 | 4 | 1 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 0 | 3 | 5 | 6 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 3 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 68 | 7 | 40 | 58 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 39 | 22 | 30 | 82 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 39 | 2 | 45 | 87 | ||||||||||||
| Total protein-coding genes (size: 11403 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 212 (5.58%)
Alanine (Ala, A)
n = 233 (6.13%)
Serine (Ser, S)
n = 289 (7.61%)
Threonine (Thr, T)
n = 308 (8.11%)
Cysteine (Cys, C)
n = 28 (0.74%)
Valine (Val, V)
n = 168 (4.42%)
Leucine (Leu, L)
n = 588 (15.48%)
Isoleucine (Ile, I)
n = 373 (9.82%)
Methionine (Met, M)
n = 247 (6.5%)
Proline (Pro, P)
n = 196 (5.16%)
Phenylalanine (Phe, F)
n = 242 (6.37%)
Tyrosine (Tyr, Y)
n = 125 (3.29%)
Tryptophan (Trp, W)
n = 103 (2.71%)
Aspartic acid (Asp, D)
n = 74 (1.95%)
Glutamic acid (Glu, E)
n = 91 (2.4%)
Asparagine (Asn, N)
n = 168 (4.42%)
Glutamine (Gln, Q)
n = 81 (2.13%)
Histidine (His, H)
n = 97 (2.55%)
Lysine (Lys, K)
n = 103 (2.71%)
Arginine (Arg, R)
n = 64 (1.68%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 234 | 139 | 217 | 87 | 64 | 266 | 27 | 129 | 78 | 3 | 50 | 33 | 74 | 11 | 109 | 133 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 30 | 10 | 18 | 47 | 83 | 96 | 7 | 35 | 39 | 109 | 29 | 30 | 34 | 130 | 2 | 59 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 86 | 157 | 6 | 42 | 47 | 147 | 4 | 14 | 35 | 65 | 60 | 7 | 15 | 60 | 108 | 34 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 63 | 80 | 11 | 31 | 43 | 101 | 2 | 8 | 18 | 35 | 3 | 0 | 0 | 8 | 2 | 96 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 778 | 882 | 1248 | 892 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 456 | 977 | 749 | 1618 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 159 | 1003 | 1723 | 915 | ||||||||||||
Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​M​u​s​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​u​s​c​u​l​u​s​"​[​O​r​g​a​n​i​s​m​]​)​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
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If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.
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