Scientific name | Silurus glanis |
Common name | Sheatfish |
Maximum lifespan | 60.00 years (Silurus glanis@AnAge) |
Total mtDNA (size: 16526 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 7433 | 9093 | 4764 | 2669 | 4108 | 4985 |
Base content per 1 kb (bases) | 450 | 550 | 288 | 162 | 249 | 302 |
Base content (%) | 45.0% | 55.0% |
Total protein-coding genes (size: 11387 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 5174 | 6213 | 3488 | 1686 | 2917 | 3296 |
Base content per 1 kb (bases) | 454 | 546 | 306 | 148 | 256 | 289 |
Base content (%) | 45.4% | 54.6% |
D-loop (size: 887 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 349 | 538 | 202 | 147 | 255 | 283 |
Base content per 1 kb (bases) | 393 | 607 | 228 | 166 | 287 | 319 |
Base content (%) | 39.3% | 60.7% |
Total tRNA-coding genes (size: 1554 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 686 | 868 | 391 | 295 | 379 | 489 |
Base content per 1 kb (bases) | 441 | 559 | 252 | 190 | 244 | 315 |
Base content (%) | 44.1% | 55.9% |
Total rRNA-coding genes (size: 2633 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 1195 | 1438 | 666 | 529 | 540 | 898 |
Base content per 1 kb (bases) | 454 | 546 | 253 | 201 | 205 | 341 |
Base content (%) | 45.4% | 54.6% |
12S rRNA gene (size: 954 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 451 | 503 | 248 | 203 | 204 | 299 |
Base content per 1 kb (bases) | 473 | 527 | 260 | 213 | 214 | 313 |
Base content (%) | 47.3% | 52.7% |
16S rRNA gene (size: 1679 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 744 | 935 | 418 | 326 | 336 | 599 |
Base content per 1 kb (bases) | 443 | 557 | 249 | 194 | 200 | 357 |
Base content (%) | 44.3% | 55.7% |
ATP6 (size: 684 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 295 | 389 | 205 | 90 | 189 | 200 |
Base content per 1 kb (bases) | 431 | 569 | 300 | 132 | 276 | 292 |
Base content (%) | 43.1% | 56.9% |
ATP8 (size: 168 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 66 | 102 | 46 | 20 | 44 | 58 |
Base content per 1 kb (bases) | 393 | 607 | 274 | 119 | 262 | 345 |
Base content (%) | 39.3% | 60.7% |
COX1 (size: 1551 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 720 | 831 | 434 | 286 | 417 | 414 |
Base content per 1 kb (bases) | 464 | 536 | 280 | 184 | 269 | 267 |
Base content (%) | 46.4% | 53.6% |
COX2 (size: 691 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 315 | 376 | 200 | 115 | 183 | 193 |
Base content per 1 kb (bases) | 456 | 544 | 289 | 166 | 265 | 279 |
Base content (%) | 45.6% | 54.4% |
COX3 (size: 784 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 380 | 404 | 242 | 138 | 198 | 206 |
Base content per 1 kb (bases) | 485 | 515 | 309 | 176 | 253 | 263 |
Base content (%) | 48.5% | 51.5% |
CYTB (size: 1138 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 517 | 621 | 355 | 162 | 307 | 314 |
Base content per 1 kb (bases) | 454 | 546 | 312 | 142 | 270 | 276 |
Base content (%) | 45.4% | 54.6% |
ND1 (size: 975 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 444 | 531 | 295 | 149 | 259 | 272 |
Base content per 1 kb (bases) | 455 | 545 | 303 | 153 | 266 | 279 |
Base content (%) | 45.5% | 54.5% |
ND2 (size: 1045 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 484 | 561 | 356 | 128 | 233 | 328 |
Base content per 1 kb (bases) | 463 | 537 | 341 | 122 | 223 | 314 |
Base content (%) | 46.3% | 53.7% |
ND3 (size: 349 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 167 | 182 | 112 | 55 | 94 | 88 |
Base content per 1 kb (bases) | 479 | 521 | 321 | 158 | 269 | 252 |
Base content (%) | 47.9% | 52.1% |
ND4 (size: 1381 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 615 | 766 | 409 | 206 | 376 | 390 |
Base content per 1 kb (bases) | 445 | 555 | 296 | 149 | 272 | 282 |
Base content (%) | 44.5% | 55.5% |
ND4L (size: 297 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 144 | 153 | 95 | 49 | 82 | 71 |
Base content per 1 kb (bases) | 485 | 515 | 320 | 165 | 276 | 239 |
Base content (%) | 48.5% | 51.5% |
ND5 (size: 1827 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 789 | 1038 | 550 | 239 | 473 | 565 |
Base content per 1 kb (bases) | 432 | 568 | 301 | 131 | 259 | 309 |
Base content (%) | 43.2% | 56.8% |
ND6 (size: 519 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 245 | 274 | 193 | 52 | 67 | 207 |
Base content per 1 kb (bases) | 472 | 528 | 372 | 100 | 129 | 399 |
Base content (%) | 47.2% | 52.8% |
ATP6 (size: 684 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MALNLFDQFMSPTHLGIPLIAIALTLPWMLVPSPTNRYQNNRLVSLQNWFIKIFTHQLLMPLNQGGHKWAMILASLMIFILMLNMLGLLP View full | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
15 | 7 | 8 | 7 | 8 | 22 | 7 | 7 | 9 | 1 | 4 | 2 | 6 | 3 | 4 | 4 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
4 | 0 | 0 | 4 | 7 | 6 | 1 | 0 | 5 | 4 | 1 | 1 | 7 | 7 | 0 | 4 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
8 | 9 | 0 | 2 | 2 | 1 | 0 | 0 | 3 | 2 | 2 | 1 | 1 | 3 | 8 | 3 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
2 | 4 | 0 | 0 | 1 | 2 | 0 | 1 | 1 | 2 | 1 | 0 | 0 | 1 | 0 | 3 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
48 | 79 | 71 | 30 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
22 | 59 | 38 | 109 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
20 | 67 | 91 | 50 |
ATP8 (size: 168 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MPQLNPAPWFAILVFSWLIFLTVIPNKVLNHSFTNEVTALNAEELKSDTWNWPWH* | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
1 | 2 | 0 | 2 | 1 | 2 | 0 | 2 | 1 | 0 | 1 | 1 | 2 | 0 | 2 | 2 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
1 | 0 | 0 | 1 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 3 | 0 | 0 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
1 | 3 | 0 | 0 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 3 | 3 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
2 | 3 | 0 | 0 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 4 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
12 | 13 | 16 | 15 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
5 | 16 | 16 | 19 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
3 | 17 | 26 | 10 |
COX1 (size: 1551 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: VTITRWFFSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELAQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAP View full | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
24 | 14 | 16 | 12 | 12 | 18 | 8 | 9 | 6 | 3 | 5 | 11 | 20 | 6 | 17 | 24 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
10 | 0 | 1 | 9 | 21 | 17 | 1 | 4 | 13 | 20 | 10 | 7 | 8 | 13 | 0 | 5 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
9 | 20 | 4 | 1 | 12 | 10 | 0 | 2 | 1 | 4 | 14 | 2 | 1 | 4 | 11 | 3 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
17 | 10 | 1 | 2 | 13 | 8 | 0 | 0 | 1 | 6 | 1 | 0 | 0 | 1 | 0 | 15 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
163 | 115 | 128 | 111 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
76 | 137 | 97 | 207 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
47 | 182 | 189 | 99 |
COX2 (size: 691 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MAHPSQLGFQDAASPVMEELLHFHDHALMIVFLISTLVLYIIVVMVTTKLTNKYILDSQEIEVVWTILPAVILIMIALPSLRILYLMDEV View full | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
14 | 1 | 7 | 5 | 5 | 8 | 4 | 6 | 8 | 0 | 4 | 13 | 7 | 0 | 4 | 5 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
5 | 2 | 0 | 2 | 11 | 3 | 1 | 1 | 3 | 3 | 1 | 1 | 7 | 5 | 1 | 3 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
3 | 5 | 0 | 2 | 9 | 2 | 0 | 0 | 3 | 5 | 4 | 1 | 0 | 5 | 1 | 2 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
8 | 13 | 2 | 0 | 11 | 3 | 1 | 0 | 1 | 5 | 0 | 0 | 0 | 0 | 0 | 4 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
75 | 60 | 51 | 44 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
24 | 55 | 63 | 88 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
16 | 85 | 79 | 50 |
COX3 (size: 784 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MTHQAHAYHMVDPSPWPLTGAVAALLMTSGLAIWFHFHSTILLTLGLVLLLLTMYQWWRDIVREGTFQGHHTPPVQKGLRYGMILFITSE View full | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
6 | 7 | 3 | 4 | 9 | 12 | 4 | 5 | 8 | 1 | 3 | 4 | 8 | 1 | 6 | 17 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
4 | 0 | 2 | 6 | 5 | 10 | 0 | 2 | 9 | 8 | 3 | 3 | 5 | 3 | 2 | 2 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
10 | 12 | 1 | 0 | 3 | 6 | 1 | 0 | 3 | 2 | 10 | 2 | 0 | 0 | 1 | 5 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
11 | 10 | 0 | 1 | 4 | 2 | 0 | 0 | 1 | 3 | 1 | 0 | 0 | 0 | 0 | 10 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
74 | 72 | 51 | 64 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
44 | 69 | 55 | 93 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
20 | 101 | 100 | 40 |
CYTB (size: 1138 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MVTRKTHPLFKIINNALIDLPAPSNISAWWNFGSLLLLCLMMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWLIRNIHANGASFFF View full | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
10 | 17 | 9 | 5 | 12 | 29 | 6 | 11 | 6 | 1 | 6 | 7 | 11 | 1 | 6 | 23 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
4 | 1 | 2 | 8 | 11 | 9 | 0 | 0 | 10 | 11 | 4 | 2 | 11 | 7 | 1 | 5 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
8 | 10 | 1 | 3 | 10 | 8 | 1 | 0 | 0 | 0 | 15 | 0 | 1 | 2 | 19 | 3 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
9 | 6 | 0 | 4 | 6 | 8 | 1 | 1 | 1 | 4 | 1 | 0 | 0 | 0 | 0 | 11 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
94 | 99 | 94 | 92 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
46 | 95 | 80 | 158 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
22 | 161 | 140 | 56 |
ND1 (size: 975 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MLTLLMTHVINPLAYIVPVLLAVAFLTLIERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLITPMLALTLAMM View full | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
12 | 10 | 11 | 3 | 9 | 31 | 4 | 13 | 4 | 3 | 3 | 3 | 11 | 1 | 9 | 9 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
5 | 0 | 0 | 2 | 18 | 11 | 0 | 2 | 8 | 4 | 4 | 3 | 12 | 8 | 1 | 2 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
11 | 11 | 1 | 4 | 7 | 5 | 1 | 1 | 2 | 4 | 7 | 3 | 1 | 5 | 5 | 3 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
2 | 9 | 2 | 1 | 3 | 7 | 0 | 1 | 1 | 2 | 4 | 0 | 0 | 1 | 0 | 5 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
82 | 91 | 83 | 69 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
37 | 97 | 56 | 135 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
30 | 107 | 133 | 55 |
ND2 (size: 1045 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MSPYVITILLSSLGLGTTLTFMSSHWLLAWMGLEINTLAILPLMAQHHHPRAVEATTKYFLAQAAAAATILFASTINAWTTGEWNICYLT View full | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
16 | 17 | 8 | 9 | 17 | 28 | 2 | 7 | 14 | 1 | 0 | 2 | 4 | 0 | 5 | 6 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
6 | 0 | 2 | 2 | 17 | 17 | 3 | 0 | 7 | 8 | 2 | 2 | 12 | 7 | 1 | 2 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
17 | 26 | 0 | 3 | 3 | 9 | 1 | 0 | 7 | 2 | 6 | 1 | 2 | 3 | 7 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
7 | 3 | 1 | 0 | 1 | 10 | 0 | 1 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 10 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
67 | 105 | 119 | 57 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
41 | 122 | 56 | 129 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
20 | 129 | 153 | 46 |
ND3 (size: 1045 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MSPYVITILLSSLGLGTTLTFMSSHWLLAWMGLEINTLAILPLMAQHHHPRAVEATTKYFLAQAAAAATILFASTINAWTTGEWNICYLT View full | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
16 | 17 | 8 | 9 | 17 | 28 | 2 | 7 | 14 | 1 | 0 | 2 | 4 | 0 | 5 | 6 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
6 | 0 | 2 | 2 | 17 | 17 | 3 | 0 | 7 | 8 | 2 | 2 | 12 | 7 | 1 | 2 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
17 | 26 | 0 | 3 | 3 | 9 | 1 | 0 | 7 | 2 | 6 | 1 | 2 | 3 | 7 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
7 | 3 | 1 | 0 | 1 | 10 | 0 | 1 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 10 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
67 | 105 | 119 | 57 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
41 | 122 | 56 | 129 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
20 | 129 | 153 | 46 |
ND4 (size: 1381 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MLKILLPTIMLLPTIWFSPPKWLWTISTLQSLLIALLSLTWIKWCSETGWASSNPYMGTDPLSTPLLVLTSWFLPVMILASQNHIKTEPI View full | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
25 | 18 | 17 | 14 | 16 | 30 | 6 | 22 | 12 | 1 | 2 | 6 | 8 | 2 | 6 | 10 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
6 | 1 | 3 | 3 | 20 | 12 | 1 | 2 | 10 | 9 | 6 | 3 | 14 | 12 | 1 | 8 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
10 | 15 | 3 | 4 | 9 | 9 | 0 | 1 | 8 | 8 | 6 | 6 | 2 | 4 | 7 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
10 | 6 | 4 | 2 | 3 | 10 | 1 | 1 | 4 | 6 | 0 | 0 | 0 | 0 | 0 | 14 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
96 | 131 | 133 | 100 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
71 | 124 | 75 | 190 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
39 | 154 | 182 | 85 |
ND4L (size: 297 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MTPVYFSFTSAFTLGLLGLAFHRTHLLSALLCLEGMMLSLFIALALWMLQLEFTACSAAPMRLLAFSACEASAGLALLVATARTHGTDRL View full | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
0 | 1 | 2 | 3 | 1 | 14 | 1 | 4 | 2 | 1 | 0 | 1 | 1 | 0 | 4 | 3 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
3 | 1 | 3 | 2 | 10 | 4 | 0 | 0 | 2 | 3 | 0 | 1 | 1 | 0 | 0 | 3 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
2 | 3 | 0 | 1 | 3 | 1 | 0 | 1 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
2 | 3 | 0 | 1 | 0 | 0 | 0 | 1 | 1 | 2 | 0 | 0 | 0 | 1 | 0 | 1 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
27 | 31 | 17 | 24 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
16 | 31 | 13 | 39 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
6 | 33 | 41 | 19 |
ND5 (size: 1827 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MVNIIMTTTLLLTLTILILPLMLTLHPKPLDQNWAMKHAKTAVSLAFFTSTIPLIIFLDQGTESIITTWSWMNIMNFDINISFKFDHYSL View full | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
30 | 24 | 25 | 11 | 13 | 48 | 4 | 19 | 13 | 3 | 7 | 6 | 12 | 1 | 15 | 23 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
6 | 1 | 6 | 3 | 28 | 18 | 2 | 1 | 15 | 10 | 4 | 2 | 13 | 11 | 2 | 8 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
30 | 19 | 2 | 3 | 14 | 16 | 0 | 2 | 9 | 2 | 6 | 2 | 3 | 8 | 20 | 3 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
14 | 8 | 3 | 6 | 9 | 22 | 1 | 1 | 2 | 6 | 1 | 0 | 0 | 1 | 0 | 12 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
133 | 147 | 206 | 123 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
72 | 171 | 119 | 247 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
34 | 232 | 240 | 103 |
ND6 (size: 519 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MMYFLSLLLLCLVVGLVGVASNPAPYFAALGLAMAAGVGCGVLVGHGGSLVGLMLFLIYLGGMLVVFAYSAALAAEPFPETWGVGSVKTY View full | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
2 | 0 | 3 | 3 | 0 | 0 | 3 | 8 | 0 | 0 | 13 | 1 | 0 | 13 | 9 | 1 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
6 | 4 | 1 | 8 | 2 | 2 | 6 | 6 | 1 | 5 | 14 | 3 | 0 | 0 | 1 | 2 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
0 | 1 | 0 | 5 | 0 | 1 | 0 | 2 | 0 | 8 | 0 | 3 | 15 | 1 | 0 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
0 | 2 | 5 | 3 | 0 | 0 | 2 | 2 | 0 | 1 | 1 | 0 | 0 | 0 | 1 | 2 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
81 | 15 | 19 | 58 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
42 | 31 | 23 | 77 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
70 | 6 | 25 | 72 |
Total protein-coding genes (size: 11409 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MLTLLMTHVINPLAYIVPVLLAVAFLTLIERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLITPMLALTLAMM View full | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
160 | 121 | 112 | 80 | 109 | 252 | 55 | 116 | 85 | 16 | 49 | 58 | 91 | 29 | 90 | 130 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
62 | 10 | 22 | 52 | 154 | 116 | 15 | 18 | 86 | 87 | 50 | 28 | 97 | 80 | 10 | 45 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
112 | 137 | 12 | 29 | 77 | 70 | 5 | 9 | 38 | 38 | 73 | 22 | 27 | 39 | 84 | 27 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
84 | 82 | 18 | 20 | 57 | 75 | 6 | 10 | 14 | 39 | 10 | 0 | 0 | 6 | 1 | 95 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
982 | 996 | 1012 | 811 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
510 | 1039 | 711 | 1541 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
338 | 1316 | 1443 | 704 |
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