Viewing data for Silurus glanis


Scientific name Silurus glanis
Common name Sheatfish
Maximum lifespan 60.00 years (Silurus glanis@AnAge)

Total mtDNA (size: 16526 bases) GC AT G C A T
Base content (bases) 7433 9093 4764 2669 4108 4985
Base content per 1 kb (bases) 450 550 288 162 249 302
Base content (%) 45.0% 55.0%
Total protein-coding genes (size: 11387 bases) GC AT G C A T
Base content (bases) 5174 6213 3488 1686 2917 3296
Base content per 1 kb (bases) 454 546 306 148 256 289
Base content (%) 45.4% 54.6%
D-loop (size: 887 bases) GC AT G C A T
Base content (bases) 349 538 202 147 255 283
Base content per 1 kb (bases) 393 607 228 166 287 319
Base content (%) 39.3% 60.7%
Total tRNA-coding genes (size: 1554 bases) GC AT G C A T
Base content (bases) 686 868 391 295 379 489
Base content per 1 kb (bases) 441 559 252 190 244 315
Base content (%) 44.1% 55.9%
Total rRNA-coding genes (size: 2633 bases) GC AT G C A T
Base content (bases) 1195 1438 666 529 540 898
Base content per 1 kb (bases) 454 546 253 201 205 341
Base content (%) 45.4% 54.6%
12S rRNA gene (size: 954 bases) GC AT G C A T
Base content (bases) 451 503 248 203 204 299
Base content per 1 kb (bases) 473 527 260 213 214 313
Base content (%) 47.3% 52.7%
16S rRNA gene (size: 1679 bases) GC AT G C A T
Base content (bases) 744 935 418 326 336 599
Base content per 1 kb (bases) 443 557 249 194 200 357
Base content (%) 44.3% 55.7%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 295 389 205 90 189 200
Base content per 1 kb (bases) 431 569 300 132 276 292
Base content (%) 43.1% 56.9%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 66 102 46 20 44 58
Base content per 1 kb (bases) 393 607 274 119 262 345
Base content (%) 39.3% 60.7%
COX1 (size: 1551 bases) GC AT G C A T
Base content (bases) 720 831 434 286 417 414
Base content per 1 kb (bases) 464 536 280 184 269 267
Base content (%) 46.4% 53.6%
COX2 (size: 691 bases) GC AT G C A T
Base content (bases) 315 376 200 115 183 193
Base content per 1 kb (bases) 456 544 289 166 265 279
Base content (%) 45.6% 54.4%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 380 404 242 138 198 206
Base content per 1 kb (bases) 485 515 309 176 253 263
Base content (%) 48.5% 51.5%
CYTB (size: 1138 bases) GC AT G C A T
Base content (bases) 517 621 355 162 307 314
Base content per 1 kb (bases) 454 546 312 142 270 276
Base content (%) 45.4% 54.6%
ND1 (size: 975 bases) GC AT G C A T
Base content (bases) 444 531 295 149 259 272
Base content per 1 kb (bases) 455 545 303 153 266 279
Base content (%) 45.5% 54.5%
ND2 (size: 1045 bases) GC AT G C A T
Base content (bases) 484 561 356 128 233 328
Base content per 1 kb (bases) 463 537 341 122 223 314
Base content (%) 46.3% 53.7%
ND3 (size: 349 bases) GC AT G C A T
Base content (bases) 167 182 112 55 94 88
Base content per 1 kb (bases) 479 521 321 158 269 252
Base content (%) 47.9% 52.1%
ND4 (size: 1381 bases) GC AT G C A T
Base content (bases) 615 766 409 206 376 390
Base content per 1 kb (bases) 445 555 296 149 272 282
Base content (%) 44.5% 55.5%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 144 153 95 49 82 71
Base content per 1 kb (bases) 485 515 320 165 276 239
Base content (%) 48.5% 51.5%
ND5 (size: 1827 bases) GC AT G C A T
Base content (bases) 789 1038 550 239 473 565
Base content per 1 kb (bases) 432 568 301 131 259 309
Base content (%) 43.2% 56.8%
ND6 (size: 519 bases) GC AT G C A T
Base content (bases) 245 274 193 52 67 207
Base content per 1 kb (bases) 472 528 372 100 129 399
Base content (%) 47.2% 52.8%

ATP6 (size: 684 bases)
Amino acid sequence: MALNLFDQFMSPTHLGIPLIAIALTLPWMLVPSPTNRYQNNRLVSLQNWFIKIFTHQLLMPLNQGGHKWAMILASLMIFILMLNMLGLLP View full
Amino acid frequencies:
Glycine (Gly, G)
n = 10 (4.41%)
Alanine (Ala, A)
n = 18 (7.93%)
Serine (Ser, S)
n = 8 (3.52%)
Threonine (Thr, T)
n = 21 (9.25%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 15 (6.61%)
Leucine (Leu, L)
n = 52 (22.91%)
Isoleucine (Ile, I)
n = 22 (9.69%)
Methionine (Met, M)
n = 12 (5.29%)
Proline (Pro, P)
n = 15 (6.61%)
Phenylalanine (Phe, F)
n = 8 (3.52%)
Tyrosine (Tyr, Y)
n = 4 (1.76%)
Tryptophan (Trp, W)
n = 4 (1.76%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 11 (4.85%)
Glutamine (Gln, Q)
n = 10 (4.41%)
Histidine (His, H)
n = 5 (2.2%)
Lysine (Lys, K)
n = 2 (0.88%)
Arginine (Arg, R)
n = 5 (2.2%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 7 8 7 8 22 7 7 9 1 4 2 6 3 4 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 0 4 7 6 1 0 5 4 1 1 7 7 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 9 0 2 2 1 0 0 3 2 2 1 1 3 8 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 4 0 0 1 2 0 1 1 2 1 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
48 79 71 30
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
22 59 38 109
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
20 67 91 50
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPAPWFAILVFSWLIFLTVIPNKVLNHSFTNEVTALNAEELKSDTWNWPWH*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 4 (7.27%)
Serine (Ser, S)
n = 3 (5.45%)
Threonine (Thr, T)
n = 4 (7.27%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 4 (7.27%)
Leucine (Leu, L)
n = 7 (12.73%)
Isoleucine (Ile, I)
n = 3 (5.45%)
Methionine (Met, M)
n = 1 (1.82%)
Proline (Pro, P)
n = 5 (9.09%)
Phenylalanine (Phe, F)
n = 4 (7.27%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 1 (1.82%)
Glutamic acid (Glu, E)
n = 3 (5.45%)
Asparagine (Asn, N)
n = 6 (10.91%)
Glutamine (Gln, Q)
n = 1 (1.82%)
Histidine (His, H)
n = 2 (3.64%)
Lysine (Lys, K)
n = 2 (3.64%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 2 0 2 1 2 0 2 1 0 1 1 2 0 2 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 1 1 2 0 0 0 0 0 0 2 3 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 3 0 0 1 1 1 0 0 0 0 1 0 3 3 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 3 0 0 1 2 0 0 0 0 0 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
12 13 16 15
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
5 16 16 19
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
3 17 26 10
COX1 (size: 1551 bases)
Amino acid sequence: VTITRWFFSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELAQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAP View full
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.11%)
Alanine (Ala, A)
n = 48 (9.3%)
Serine (Ser, S)
n = 26 (5.04%)
Threonine (Thr, T)
n = 38 (7.36%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 42 (8.14%)
Leucine (Leu, L)
n = 60 (11.63%)
Isoleucine (Ile, I)
n = 38 (7.36%)
Methionine (Met, M)
n = 26 (5.04%)
Proline (Pro, P)
n = 28 (5.43%)
Phenylalanine (Phe, F)
n = 41 (7.95%)
Tyrosine (Tyr, Y)
n = 18 (3.49%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 15 (2.91%)
Glutamic acid (Glu, E)
n = 11 (2.13%)
Asparagine (Asn, N)
n = 15 (2.91%)
Glutamine (Gln, Q)
n = 9 (1.74%)
Histidine (His, H)
n = 20 (3.88%)
Lysine (Lys, K)
n = 8 (1.55%)
Arginine (Arg, R)
n = 8 (1.55%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
24 14 16 12 12 18 8 9 6 3 5 11 20 6 17 24
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
10 0 1 9 21 17 1 4 13 20 10 7 8 13 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 20 4 1 12 10 0 2 1 4 14 2 1 4 11 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
17 10 1 2 13 8 0 0 1 6 1 0 0 1 0 15
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
163 115 128 111
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
76 137 97 207
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
47 182 189 99
COX2 (size: 691 bases)
Amino acid sequence: MAHPSQLGFQDAASPVMEELLHFHDHALMIVFLISTLVLYIIVVMVTTKLTNKYILDSQEIEVVWTILPAVILIMIALPSLRILYLMDEV View full
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.49%)
Alanine (Ala, A)
n = 17 (7.42%)
Serine (Ser, S)
n = 16 (6.99%)
Threonine (Thr, T)
n = 11 (4.8%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 24 (10.48%)
Leucine (Leu, L)
n = 28 (12.23%)
Isoleucine (Ile, I)
n = 15 (6.55%)
Methionine (Met, M)
n = 12 (5.24%)
Proline (Pro, P)
n = 14 (6.11%)
Phenylalanine (Phe, F)
n = 9 (3.93%)
Tyrosine (Tyr, Y)
n = 9 (3.93%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 11 (4.8%)
Glutamic acid (Glu, E)
n = 15 (6.55%)
Asparagine (Asn, N)
n = 6 (2.62%)
Glutamine (Gln, Q)
n = 8 (3.49%)
Histidine (His, H)
n = 10 (4.37%)
Lysine (Lys, K)
n = 4 (1.75%)
Arginine (Arg, R)
n = 6 (2.62%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 1 7 5 5 8 4 6 8 0 4 13 7 0 4 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 2 0 2 11 3 1 1 3 3 1 1 7 5 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 5 0 2 9 2 0 0 3 5 4 1 0 5 1 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 13 2 0 11 3 1 0 1 5 0 0 0 0 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
75 60 51 44
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
24 55 63 88
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
16 85 79 50
COX3 (size: 784 bases)
Amino acid sequence: MTHQAHAYHMVDPSPWPLTGAVAALLMTSGLAIWFHFHSTILLTLGLVLLLLTMYQWWRDIVREGTFQGHHTPPVQKGLRYGMILFITSE View full
Amino acid frequencies:
Glycine (Gly, G)
n = 22 (8.46%)
Alanine (Ala, A)
n = 21 (8.08%)
Serine (Ser, S)
n = 13 (5.0%)
Threonine (Thr, T)
n = 25 (9.62%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 16 (6.15%)
Leucine (Leu, L)
n = 34 (13.08%)
Isoleucine (Ile, I)
n = 13 (5.0%)
Methionine (Met, M)
n = 7 (2.69%)
Proline (Pro, P)
n = 13 (5.0%)
Phenylalanine (Phe, F)
n = 23 (8.85%)
Tyrosine (Tyr, Y)
n = 12 (4.62%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 10 (3.85%)
Asparagine (Asn, N)
n = 1 (0.38%)
Glutamine (Gln, Q)
n = 9 (3.46%)
Histidine (His, H)
n = 16 (6.15%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
6 7 3 4 9 12 4 5 8 1 3 4 8 1 6 17
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 2 6 5 10 0 2 9 8 3 3 5 3 2 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 12 1 0 3 6 1 0 3 2 10 2 0 0 1 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 10 0 1 4 2 0 0 1 3 1 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
74 72 51 64
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 69 55 93
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
20 101 100 40
CYTB (size: 1138 bases)
Amino acid sequence: MVTRKTHPLFKIINNALIDLPAPSNISAWWNFGSLLLLCLMMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWLIRNIHANGASFFF View full
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (6.61%)
Alanine (Ala, A)
n = 28 (7.41%)
Serine (Ser, S)
n = 22 (5.82%)
Threonine (Thr, T)
n = 24 (6.35%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 25 (6.61%)
Leucine (Leu, L)
n = 64 (16.93%)
Isoleucine (Ile, I)
n = 27 (7.14%)
Methionine (Met, M)
n = 13 (3.44%)
Proline (Pro, P)
n = 21 (5.56%)
Phenylalanine (Phe, F)
n = 29 (7.67%)
Tyrosine (Tyr, Y)
n = 15 (3.97%)
Tryptophan (Trp, W)
n = 11 (2.91%)
Aspartic acid (Asp, D)
n = 10 (2.65%)
Glutamic acid (Glu, E)
n = 6 (1.59%)
Asparagine (Asn, N)
n = 21 (5.56%)
Glutamine (Gln, Q)
n = 7 (1.85%)
Histidine (His, H)
n = 12 (3.17%)
Lysine (Lys, K)
n = 9 (2.38%)
Arginine (Arg, R)
n = 7 (1.85%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 17 9 5 12 29 6 11 6 1 6 7 11 1 6 23
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 2 8 11 9 0 0 10 11 4 2 11 7 1 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 10 1 3 10 8 1 0 0 0 15 0 1 2 19 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 6 0 4 6 8 1 1 1 4 1 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
94 99 94 92
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
46 95 80 158
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
22 161 140 56
ND1 (size: 975 bases)
Amino acid sequence: MLTLLMTHVINPLAYIVPVLLAVAFLTLIERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLITPMLALTLAMM View full
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.56%)
Alanine (Ala, A)
n = 31 (9.57%)
Serine (Ser, S)
n = 20 (6.17%)
Threonine (Thr, T)
n = 25 (7.72%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 18 (5.56%)
Leucine (Leu, L)
n = 61 (18.83%)
Isoleucine (Ile, I)
n = 22 (6.79%)
Methionine (Met, M)
n = 16 (4.94%)
Proline (Pro, P)
n = 24 (7.41%)
Phenylalanine (Phe, F)
n = 18 (5.56%)
Tyrosine (Tyr, Y)
n = 11 (3.4%)
Tryptophan (Trp, W)
n = 8 (2.47%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.4%)
Asparagine (Asn, N)
n = 10 (3.09%)
Glutamine (Gln, Q)
n = 7 (2.16%)
Histidine (His, H)
n = 5 (1.54%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 10 11 3 9 31 4 13 4 3 3 3 11 1 9 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 0 2 18 11 0 2 8 4 4 3 12 8 1 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 11 1 4 7 5 1 1 2 4 7 3 1 5 5 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 9 2 1 3 7 0 1 1 2 4 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
82 91 83 69
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
37 97 56 135
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
30 107 133 55
ND2 (size: 1045 bases)
Amino acid sequence: MSPYVITILLSSLGLGTTLTFMSSHWLLAWMGLEINTLAILPLMAQHHHPRAVEATTKYFLAQAAAAATILFASTINAWTTGEWNICYLT View full
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (4.9%)
Alanine (Ala, A)
n = 39 (11.24%)
Serine (Ser, S)
n = 23 (6.63%)
Threonine (Thr, T)
n = 45 (12.97%)
Cysteine (Cys, C)
n = 2 (0.58%)
Valine (Val, V)
n = 6 (1.73%)
Leucine (Leu, L)
n = 65 (18.73%)
Isoleucine (Ile, I)
n = 33 (9.51%)
Methionine (Met, M)
n = 14 (4.03%)
Proline (Pro, P)
n = 22 (6.34%)
Phenylalanine (Phe, F)
n = 11 (3.17%)
Tyrosine (Tyr, Y)
n = 8 (2.31%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 10 (2.88%)
Glutamine (Gln, Q)
n = 15 (4.32%)
Histidine (His, H)
n = 8 (2.31%)
Lysine (Lys, K)
n = 10 (2.88%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
16 17 8 9 17 28 2 7 14 1 0 2 4 0 5 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 2 2 17 17 3 0 7 8 2 2 12 7 1 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
17 26 0 3 3 9 1 0 7 2 6 1 2 3 7 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 3 1 0 1 10 0 1 1 2 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
67 105 119 57
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
41 122 56 129
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
20 129 153 46
ND3 (size: 1045 bases)
Amino acid sequence: MSPYVITILLSSLGLGTTLTFMSSHWLLAWMGLEINTLAILPLMAQHHHPRAVEATTKYFLAQAAAAATILFASTINAWTTGEWNICYLT View full
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (4.9%)
Alanine (Ala, A)
n = 39 (11.24%)
Serine (Ser, S)
n = 23 (6.63%)
Threonine (Thr, T)
n = 45 (12.97%)
Cysteine (Cys, C)
n = 2 (0.58%)
Valine (Val, V)
n = 6 (1.73%)
Leucine (Leu, L)
n = 65 (18.73%)
Isoleucine (Ile, I)
n = 33 (9.51%)
Methionine (Met, M)
n = 14 (4.03%)
Proline (Pro, P)
n = 22 (6.34%)
Phenylalanine (Phe, F)
n = 11 (3.17%)
Tyrosine (Tyr, Y)
n = 8 (2.31%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 10 (2.88%)
Glutamine (Gln, Q)
n = 15 (4.32%)
Histidine (His, H)
n = 8 (2.31%)
Lysine (Lys, K)
n = 10 (2.88%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
16 17 8 9 17 28 2 7 14 1 0 2 4 0 5 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 2 2 17 17 3 0 7 8 2 2 12 7 1 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
17 26 0 3 3 9 1 0 7 2 6 1 2 3 7 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 3 1 0 1 10 0 1 1 2 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
67 105 119 57
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
41 122 56 129
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
20 129 153 46
ND4 (size: 1381 bases)
Amino acid sequence: MLKILLPTIMLLPTIWFSPPKWLWTISTLQSLLIALLSLTWIKWCSETGWASSNPYMGTDPLSTPLLVLTSWFLPVMILASQNHIKTEPI View full
Amino acid frequencies:
Glycine (Gly, G)
n = 27 (5.88%)
Alanine (Ala, A)
n = 36 (7.84%)
Serine (Ser, S)
n = 31 (6.75%)
Threonine (Thr, T)
n = 36 (7.84%)
Cysteine (Cys, C)
n = 4 (0.87%)
Valine (Val, V)
n = 18 (3.92%)
Leucine (Leu, L)
n = 90 (19.61%)
Isoleucine (Ile, I)
n = 43 (9.37%)
Methionine (Met, M)
n = 23 (5.01%)
Proline (Pro, P)
n = 30 (6.54%)
Phenylalanine (Phe, F)
n = 16 (3.49%)
Tyrosine (Tyr, Y)
n = 14 (3.05%)
Tryptophan (Trp, W)
n = 20 (4.36%)
Aspartic acid (Asp, D)
n = 5 (1.09%)
Glutamic acid (Glu, E)
n = 10 (2.18%)
Asparagine (Asn, N)
n = 11 (2.4%)
Glutamine (Gln, Q)
n = 13 (2.83%)
Histidine (His, H)
n = 11 (2.4%)
Lysine (Lys, K)
n = 11 (2.4%)
Arginine (Arg, R)
n = 11 (2.4%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
25 18 17 14 16 30 6 22 12 1 2 6 8 2 6 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 1 3 3 20 12 1 2 10 9 6 3 14 12 1 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 15 3 4 9 9 0 1 8 8 6 6 2 4 7 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 6 4 2 3 10 1 1 4 6 0 0 0 0 0 14
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
96 131 133 100
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
71 124 75 190
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
39 154 182 85
ND4L (size: 297 bases)
Amino acid sequence: MTPVYFSFTSAFTLGLLGLAFHRTHLLSALLCLEGMMLSLFIALALWMLQLEFTACSAAPMRLLAFSACEASAGLALLVATARTHGTDRL View full
Amino acid frequencies:
Glycine (Gly, G)
n = 5 (5.1%)
Alanine (Ala, A)
n = 16 (16.33%)
Serine (Ser, S)
n = 7 (7.14%)
Threonine (Thr, T)
n = 8 (8.16%)
Cysteine (Cys, C)
n = 4 (4.08%)
Valine (Val, V)
n = 2 (2.04%)
Leucine (Leu, L)
n = 24 (24.49%)
Isoleucine (Ile, I)
n = 1 (1.02%)
Methionine (Met, M)
n = 5 (5.1%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 7 (7.14%)
Tyrosine (Tyr, Y)
n = 1 (1.02%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 3 (3.06%)
Asparagine (Asn, N)
n = 1 (1.02%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 3 (3.06%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 4 (4.08%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
0 1 2 3 1 14 1 4 2 1 0 1 1 0 4 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 3 2 10 4 0 0 2 3 0 1 1 0 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 3 0 1 3 1 0 1 1 0 1 0 1 0 1 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 3 0 1 0 0 0 1 1 2 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
27 31 17 24
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
16 31 13 39
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
6 33 41 19
ND5 (size: 1827 bases)
Amino acid sequence: MVNIIMTTTLLLTLTILILPLMLTLHPKPLDQNWAMKHAKTAVSLAFFTSTIPLIIFLDQGTESIITTWSWMNIMNFDINISFKFDHYSL View full
Amino acid frequencies:
Glycine (Gly, G)
n = 30 (4.93%)
Alanine (Ala, A)
n = 51 (8.39%)
Serine (Ser, S)
n = 44 (7.24%)
Threonine (Thr, T)
n = 59 (9.7%)
Cysteine (Cys, C)
n = 7 (1.15%)
Valine (Val, V)
n = 26 (4.28%)
Leucine (Leu, L)
n = 98 (16.12%)
Isoleucine (Ile, I)
n = 54 (8.88%)
Methionine (Met, M)
n = 31 (5.1%)
Proline (Pro, P)
n = 28 (4.61%)
Phenylalanine (Phe, F)
n = 38 (6.25%)
Tyrosine (Tyr, Y)
n = 8 (1.32%)
Tryptophan (Trp, W)
n = 14 (2.3%)
Aspartic acid (Asp, D)
n = 15 (2.47%)
Glutamic acid (Glu, E)
n = 11 (1.81%)
Asparagine (Asn, N)
n = 28 (4.61%)
Glutamine (Gln, Q)
n = 16 (2.63%)
Histidine (His, H)
n = 17 (2.8%)
Lysine (Lys, K)
n = 23 (3.78%)
Arginine (Arg, R)
n = 10 (1.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
30 24 25 11 13 48 4 19 13 3 7 6 12 1 15 23
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 1 6 3 28 18 2 1 15 10 4 2 13 11 2 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
30 19 2 3 14 16 0 2 9 2 6 2 3 8 20 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
14 8 3 6 9 22 1 1 2 6 1 0 0 1 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
133 147 206 123
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
72 171 119 247
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
34 232 240 103
ND6 (size: 519 bases)
Amino acid sequence: MMYFLSLLLLCLVVGLVGVASNPAPYFAALGLAMAAGVGCGVLVGHGGSLVGLMLFLIYLGGMLVVFAYSAALAAEPFPETWGVGSVKTY View full
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (15.12%)
Alanine (Ala, A)
n = 18 (10.47%)
Serine (Ser, S)
n = 8 (4.65%)
Threonine (Thr, T)
n = 3 (1.74%)
Cysteine (Cys, C)
n = 5 (2.91%)
Valine (Val, V)
n = 27 (15.7%)
Leucine (Leu, L)
n = 29 (16.86%)
Isoleucine (Ile, I)
n = 2 (1.16%)
Methionine (Met, M)
n = 9 (5.23%)
Proline (Pro, P)
n = 4 (2.33%)
Phenylalanine (Phe, F)
n = 10 (5.81%)
Tyrosine (Tyr, Y)
n = 8 (4.65%)
Tryptophan (Trp, W)
n = 5 (2.91%)
Aspartic acid (Asp, D)
n = 3 (1.74%)
Glutamic acid (Glu, E)
n = 7 (4.07%)
Asparagine (Asn, N)
n = 1 (0.58%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 1 (0.58%)
Lysine (Lys, K)
n = 2 (1.16%)
Arginine (Arg, R)
n = 4 (2.33%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 0 3 3 0 0 3 8 0 0 13 1 0 13 9 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 4 1 8 2 2 6 6 1 5 14 3 0 0 1 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 1 0 5 0 1 0 2 0 8 0 3 15 1 0 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 2 5 3 0 0 2 2 0 1 1 0 0 0 1 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
81 15 19 58
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
42 31 23 77
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
70 6 25 72
Total protein-coding genes (size: 11409 bases)
Amino acid sequence: MLTLLMTHVINPLAYIVPVLLAVAFLTLIERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLITPMLALTLAMM View full
Amino acid frequencies:
Glycine (Gly, G)
n = 241 (6.34%)
Alanine (Ala, A)
n = 337 (8.87%)
Serine (Ser, S)
n = 228 (6.0%)
Threonine (Thr, T)
n = 306 (8.05%)
Cysteine (Cys, C)
n = 32 (0.84%)
Valine (Val, V)
n = 227 (5.97%)
Leucine (Leu, L)
n = 639 (16.82%)
Isoleucine (Ile, I)
n = 281 (7.39%)
Methionine (Met, M)
n = 174 (4.58%)
Proline (Pro, P)
n = 215 (5.66%)
Phenylalanine (Phe, F)
n = 220 (5.79%)
Tyrosine (Tyr, Y)
n = 111 (2.92%)
Tryptophan (Trp, W)
n = 117 (3.08%)
Aspartic acid (Asp, D)
n = 77 (2.03%)
Glutamic acid (Glu, E)
n = 100 (2.63%)
Asparagine (Asn, N)
n = 123 (3.24%)
Glutamine (Gln, Q)
n = 101 (2.66%)
Histidine (His, H)
n = 111 (2.92%)
Lysine (Lys, K)
n = 81 (2.13%)
Arginine (Arg, R)
n = 73 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
160 121 112 80 109 252 55 116 85 16 49 58 91 29 90 130
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
62 10 22 52 154 116 15 18 86 87 50 28 97 80 10 45
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
112 137 12 29 77 70 5 9 38 38 73 22 27 39 84 27
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
84 82 18 20 57 75 6 10 14 39 10 0 0 6 1 95
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
982 996 1012 811
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
510 1039 711 1541
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
338 1316 1443 704

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Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.