Viewing data for Salvelinus fontinalis


Scientific name Salvelinus fontinalis
Common name Bunnylake brook trout
Maximum lifespan 24.00 years (Salvelinus fontinalis@AnAge)

Total mtDNA (size: 16624 bases) GC AT G C A T
Base content (bases) 7516 9108 4705 2811 4417 4691
Base content per 1 kb (bases) 452 548 283 169 266 282
Base content (%) 45.2% 54.8%
Total protein-coding genes (size: 11419 bases) GC AT G C A T
Base content (bases) 5140 6279 3396 1744 3207 3072
Base content per 1 kb (bases) 450 550 297 153 281 269
Base content (%) 45.0% 55.0%
D-loop (size: 964 bases) GC AT G C A T
Base content (bases) 370 594 219 151 286 308
Base content per 1 kb (bases) 384 616 227 157 297 320
Base content (%) 38.4% 61.6%
Total tRNA-coding genes (size: 1552 bases) GC AT G C A T
Base content (bases) 695 857 389 306 395 462
Base content per 1 kb (bases) 448 552 251 197 255 298
Base content (%) 44.8% 55.2%
Total rRNA-coding genes (size: 2627 bases) GC AT G C A T
Base content (bases) 1273 1354 680 593 514 840
Base content per 1 kb (bases) 485 515 259 226 196 320
Base content (%) 48.5% 51.5%
12S rRNA gene (size: 947 bases) GC AT G C A T
Base content (bases) 471 476 256 215 190 286
Base content per 1 kb (bases) 497 503 270 227 201 302
Base content (%) 49.7% 50.3%
16S rRNA gene (size: 1680 bases) GC AT G C A T
Base content (bases) 802 878 424 378 324 554
Base content per 1 kb (bases) 477 523 252 225 193 330
Base content (%) 47.7% 52.3%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 313 371 220 93 205 166
Base content per 1 kb (bases) 458 542 322 136 300 243
Base content (%) 45.8% 54.2%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 74 94 54 20 44 50
Base content per 1 kb (bases) 440 560 321 119 262 298
Base content (%) 44.0% 56.0%
COX1 (size: 1551 bases) GC AT G C A T
Base content (bases) 687 864 405 282 476 388
Base content per 1 kb (bases) 443 557 261 182 307 250
Base content (%) 44.3% 55.7%
COX2 (size: 691 bases) GC AT G C A T
Base content (bases) 312 379 196 116 187 192
Base content per 1 kb (bases) 452 548 284 168 271 278
Base content (%) 45.2% 54.8%
COX3 (size: 786 bases) GC AT G C A T
Base content (bases) 366 420 230 136 230 190
Base content per 1 kb (bases) 466 534 293 173 293 242
Base content (%) 46.6% 53.4%
CYTB (size: 1141 bases) GC AT G C A T
Base content (bases) 530 611 346 184 329 282
Base content per 1 kb (bases) 465 535 303 161 288 247
Base content (%) 46.5% 53.5%
ND1 (size: 975 bases) GC AT G C A T
Base content (bases) 445 530 299 146 278 252
Base content per 1 kb (bases) 456 544 307 150 285 258
Base content (%) 45.6% 54.4%
ND2 (size: 1050 bases) GC AT G C A T
Base content (bases) 473 577 322 151 298 279
Base content per 1 kb (bases) 450 550 307 144 284 266
Base content (%) 45.0% 55.0%
ND3 (size: 351 bases) GC AT G C A T
Base content (bases) 167 184 116 51 101 83
Base content per 1 kb (bases) 476 524 330 145 288 236
Base content (%) 47.6% 52.4%
ND4 (size: 1386 bases) GC AT G C A T
Base content (bases) 601 785 393 208 396 389
Base content per 1 kb (bases) 434 566 284 150 286 281
Base content (%) 43.4% 56.6%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 144 153 96 48 81 72
Base content per 1 kb (bases) 485 515 323 162 273 242
Base content (%) 48.5% 51.5%
ND5 (size: 1839 bases) GC AT G C A T
Base content (bases) 782 1057 541 241 518 539
Base content per 1 kb (bases) 425 575 294 131 282 293
Base content (%) 42.5% 57.5%
ND6 (size: 522 bases) GC AT G C A T
Base content (bases) 251 271 181 70 70 201
Base content per 1 kb (bases) 481 519 347 134 134 385
Base content (%) 48.1% 51.9%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.85%)
Alanine (Ala, A)
n = 18 (7.93%)
Serine (Ser, S)
n = 8 (3.52%)
Threonine (Thr, T)
n = 22 (9.69%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 14 (6.17%)
Leucine (Leu, L)
n = 54 (23.79%)
Isoleucine (Ile, I)
n = 21 (9.25%)
Methionine (Met, M)
n = 8 (3.52%)
Proline (Pro, P)
n = 17 (7.49%)
Phenylalanine (Phe, F)
n = 12 (5.29%)
Tyrosine (Tyr, Y)
n = 4 (1.76%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 9 (3.96%)
Glutamine (Gln, Q)
n = 9 (3.96%)
Histidine (His, H)
n = 3 (1.32%)
Lysine (Lys, K)
n = 1 (0.44%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 7 5 18 9 17 3 6 7 2 3 5 6 0 5 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 2 9 4 3 4 4 1 2 2 11 3 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 10 0 1 3 0 0 0 4 4 0 1 1 4 5 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 2 2 0 1 1 0 2 1 2 1 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
48 82 65 33
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
26 61 32 109
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
19 77 69 63
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPAPWFAILVFSWLVFLTVIPPKVLGHTFTNEPTSQSTEKTKPEPWNWPWH*
Amino acid frequencies:
Glycine (Gly, G)
n = 1 (1.82%)
Alanine (Ala, A)
n = 2 (3.64%)
Serine (Ser, S)
n = 3 (5.45%)
Threonine (Thr, T)
n = 6 (10.91%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 4 (7.27%)
Leucine (Leu, L)
n = 5 (9.09%)
Isoleucine (Ile, I)
n = 2 (3.64%)
Methionine (Met, M)
n = 1 (1.82%)
Proline (Pro, P)
n = 9 (16.36%)
Phenylalanine (Phe, F)
n = 4 (7.27%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 3 (5.45%)
Asparagine (Asn, N)
n = 3 (5.45%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 2 (3.64%)
Lysine (Lys, K)
n = 3 (5.45%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 0 0 0 2 0 1 2 2 0 2 1 1 0 2 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 1 1 0 0 0 1 0 0 1 7 1 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 1 0 0 0 2 0 1 0 0 0 0 0 1 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 2 1 0 0 3 0 0 0 0 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
10 16 16 14
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
7 19 14 16
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
3 19 20 14
COX1 (size: 1551 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.11%)
Alanine (Ala, A)
n = 48 (9.3%)
Serine (Ser, S)
n = 29 (5.62%)
Threonine (Thr, T)
n = 36 (6.98%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 39 (7.56%)
Leucine (Leu, L)
n = 61 (11.82%)
Isoleucine (Ile, I)
n = 42 (8.14%)
Methionine (Met, M)
n = 25 (4.84%)
Proline (Pro, P)
n = 28 (5.43%)
Phenylalanine (Phe, F)
n = 42 (8.14%)
Tyrosine (Tyr, Y)
n = 18 (3.49%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 14 (2.71%)
Glutamic acid (Glu, E)
n = 11 (2.13%)
Asparagine (Asn, N)
n = 15 (2.91%)
Glutamine (Gln, Q)
n = 8 (1.55%)
Histidine (His, H)
n = 19 (3.68%)
Lysine (Lys, K)
n = 8 (1.55%)
Arginine (Arg, R)
n = 8 (1.55%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
26 16 15 13 14 13 4 17 4 4 12 9 14 4 25 17
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
10 0 1 17 19 11 1 6 10 21 10 4 10 11 3 12
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 12 2 5 11 7 1 0 5 10 8 0 0 7 8 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
14 6 5 4 10 8 0 1 0 6 1 0 0 1 0 17
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
159 107 131 120
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
78 136 94 209
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
45 162 163 147
COX2 (size: 691 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.93%)
Alanine (Ala, A)
n = 16 (6.99%)
Serine (Ser, S)
n = 16 (6.99%)
Threonine (Thr, T)
n = 10 (4.37%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 23 (10.04%)
Leucine (Leu, L)
n = 28 (12.23%)
Isoleucine (Ile, I)
n = 18 (7.86%)
Methionine (Met, M)
n = 11 (4.8%)
Proline (Pro, P)
n = 14 (6.11%)
Phenylalanine (Phe, F)
n = 8 (3.49%)
Tyrosine (Tyr, Y)
n = 9 (3.93%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 13 (5.68%)
Glutamic acid (Glu, E)
n = 15 (6.55%)
Asparagine (Asn, N)
n = 4 (1.75%)
Glutamine (Gln, Q)
n = 8 (3.49%)
Histidine (His, H)
n = 10 (4.37%)
Lysine (Lys, K)
n = 5 (2.18%)
Arginine (Arg, R)
n = 6 (2.62%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 11 7 14 7 2 1 4 8 0 6 9 6 2 3 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 1 3 5 6 2 1 2 6 0 3 4 6 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 3 0 3 6 3 1 0 3 4 5 0 0 1 3 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 13 2 3 10 4 1 0 1 4 1 0 0 0 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
76 62 51 41
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 53 64 88
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 81 77 57
COX3 (size: 786 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 22 (8.43%)
Alanine (Ala, A)
n = 21 (8.05%)
Serine (Ser, S)
n = 14 (5.36%)
Threonine (Thr, T)
n = 22 (8.43%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 16 (6.13%)
Leucine (Leu, L)
n = 32 (12.26%)
Isoleucine (Ile, I)
n = 16 (6.13%)
Methionine (Met, M)
n = 7 (2.68%)
Proline (Pro, P)
n = 12 (4.6%)
Phenylalanine (Phe, F)
n = 24 (9.2%)
Tyrosine (Tyr, Y)
n = 12 (4.6%)
Tryptophan (Trp, W)
n = 12 (4.6%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 10 (3.83%)
Asparagine (Asn, N)
n = 2 (0.77%)
Glutamine (Gln, Q)
n = 9 (3.45%)
Histidine (His, H)
n = 16 (6.13%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 6 2 10 3 7 4 7 9 0 3 8 5 0 11 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 2 3 11 6 1 3 13 4 2 3 5 4 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 8 1 4 3 4 0 1 2 5 7 0 1 2 0 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
12 7 3 1 4 2 0 0 1 3 1 0 0 1 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
74 66 52 70
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 66 57 95
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
18 98 81 65
CYTB (size: 1141 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 27 (7.12%)
Alanine (Ala, A)
n = 35 (9.23%)
Serine (Ser, S)
n = 21 (5.54%)
Threonine (Thr, T)
n = 24 (6.33%)
Cysteine (Cys, C)
n = 4 (1.06%)
Valine (Val, V)
n = 26 (6.86%)
Leucine (Leu, L)
n = 58 (15.3%)
Isoleucine (Ile, I)
n = 28 (7.39%)
Methionine (Met, M)
n = 10 (2.64%)
Proline (Pro, P)
n = 21 (5.54%)
Phenylalanine (Phe, F)
n = 30 (7.92%)
Tyrosine (Tyr, Y)
n = 14 (3.69%)
Tryptophan (Trp, W)
n = 13 (3.43%)
Aspartic acid (Asp, D)
n = 11 (2.9%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 17 (4.49%)
Glutamine (Gln, Q)
n = 6 (1.58%)
Histidine (His, H)
n = 12 (3.17%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 13 6 12 15 22 0 9 5 1 5 4 14 3 10 20
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 3 1 9 19 5 2 3 8 9 7 2 9 10 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
15 5 1 7 7 3 3 1 0 3 11 3 0 8 9 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 6 0 3 8 7 2 0 1 7 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
105 96 89 90
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
53 100 75 152
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
26 150 118 86
ND1 (size: 975 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.56%)
Alanine (Ala, A)
n = 34 (10.49%)
Serine (Ser, S)
n = 21 (6.48%)
Threonine (Thr, T)
n = 22 (6.79%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 22 (6.79%)
Leucine (Leu, L)
n = 64 (19.75%)
Isoleucine (Ile, I)
n = 21 (6.48%)
Methionine (Met, M)
n = 9 (2.78%)
Proline (Pro, P)
n = 24 (7.41%)
Phenylalanine (Phe, F)
n = 18 (5.56%)
Tyrosine (Tyr, Y)
n = 12 (3.7%)
Tryptophan (Trp, W)
n = 8 (2.47%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.4%)
Asparagine (Asn, N)
n = 10 (3.09%)
Glutamine (Gln, Q)
n = 7 (2.16%)
Histidine (His, H)
n = 4 (1.23%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 10 6 18 12 20 3 10 7 0 6 4 11 1 9 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 10 12 9 3 1 5 9 3 8 8 7 1 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 8 0 5 7 4 0 0 5 3 9 0 1 3 7 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 9 2 0 4 7 0 1 0 6 1 0 0 1 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
89 96 74 66
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
39 96 56 134
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
18 107 122 78
ND2 (size: 1050 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 16 (4.58%)
Alanine (Ala, A)
n = 44 (12.61%)
Serine (Ser, S)
n = 23 (6.59%)
Threonine (Thr, T)
n = 36 (10.32%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 12 (3.44%)
Leucine (Leu, L)
n = 79 (22.64%)
Isoleucine (Ile, I)
n = 23 (6.59%)
Methionine (Met, M)
n = 15 (4.3%)
Proline (Pro, P)
n = 21 (6.02%)
Phenylalanine (Phe, F)
n = 11 (3.15%)
Tyrosine (Tyr, Y)
n = 8 (2.29%)
Tryptophan (Trp, W)
n = 11 (3.15%)
Aspartic acid (Asp, D)
n = 2 (0.57%)
Glutamic acid (Glu, E)
n = 8 (2.29%)
Asparagine (Asn, N)
n = 8 (2.29%)
Glutamine (Gln, Q)
n = 11 (3.15%)
Histidine (His, H)
n = 7 (2.01%)
Lysine (Lys, K)
n = 9 (2.58%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
16 7 11 21 13 23 8 12 9 2 4 2 4 2 5 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 0 11 14 16 3 1 4 8 3 5 10 5 1 13
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 11 0 5 6 5 2 1 4 5 3 2 2 3 5 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 7 1 0 2 7 2 1 2 1 0 0 0 1 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
82 108 96 64
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
37 119 54 140
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
32 95 129 94
ND3 (size: 1050 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 16 (4.58%)
Alanine (Ala, A)
n = 44 (12.61%)
Serine (Ser, S)
n = 23 (6.59%)
Threonine (Thr, T)
n = 36 (10.32%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 12 (3.44%)
Leucine (Leu, L)
n = 79 (22.64%)
Isoleucine (Ile, I)
n = 23 (6.59%)
Methionine (Met, M)
n = 15 (4.3%)
Proline (Pro, P)
n = 21 (6.02%)
Phenylalanine (Phe, F)
n = 11 (3.15%)
Tyrosine (Tyr, Y)
n = 8 (2.29%)
Tryptophan (Trp, W)
n = 11 (3.15%)
Aspartic acid (Asp, D)
n = 2 (0.57%)
Glutamic acid (Glu, E)
n = 8 (2.29%)
Asparagine (Asn, N)
n = 8 (2.29%)
Glutamine (Gln, Q)
n = 11 (3.15%)
Histidine (His, H)
n = 7 (2.01%)
Lysine (Lys, K)
n = 9 (2.58%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
16 7 11 21 13 23 8 12 9 2 4 2 4 2 5 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 0 11 14 16 3 1 4 8 3 5 10 5 1 13
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 11 0 5 6 5 2 1 4 5 3 2 2 3 5 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 7 1 0 2 7 2 1 2 1 0 0 0 1 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
82 108 96 64
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
37 119 54 140
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
32 95 129 94
ND4 (size: 1386 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 27 (5.86%)
Alanine (Ala, A)
n = 35 (7.59%)
Serine (Ser, S)
n = 33 (7.16%)
Threonine (Thr, T)
n = 40 (8.68%)
Cysteine (Cys, C)
n = 6 (1.3%)
Valine (Val, V)
n = 14 (3.04%)
Leucine (Leu, L)
n = 94 (20.39%)
Isoleucine (Ile, I)
n = 39 (8.46%)
Methionine (Met, M)
n = 27 (5.86%)
Proline (Pro, P)
n = 26 (5.64%)
Phenylalanine (Phe, F)
n = 15 (3.25%)
Tyrosine (Tyr, Y)
n = 14 (3.04%)
Tryptophan (Trp, W)
n = 20 (4.34%)
Aspartic acid (Asp, D)
n = 5 (1.08%)
Glutamic acid (Glu, E)
n = 12 (2.6%)
Asparagine (Asn, N)
n = 10 (2.17%)
Glutamine (Gln, Q)
n = 11 (2.39%)
Histidine (His, H)
n = 11 (2.39%)
Lysine (Lys, K)
n = 11 (2.39%)
Arginine (Arg, R)
n = 11 (2.39%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 26 21 20 14 32 6 18 9 2 4 2 8 0 7 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 4 2 9 11 14 1 5 6 9 7 8 9 6 3 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
16 13 3 8 7 9 0 4 5 6 8 4 4 3 7 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 10 2 1 4 9 2 4 3 3 1 1 0 0 0 16
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
93 131 137 101
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
74 125 74 189
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
41 137 178 106
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 6 (6.12%)
Alanine (Ala, A)
n = 14 (14.29%)
Serine (Ser, S)
n = 9 (9.18%)
Threonine (Thr, T)
n = 7 (7.14%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 3 (3.06%)
Leucine (Leu, L)
n = 23 (23.47%)
Isoleucine (Ile, I)
n = 2 (2.04%)
Methionine (Met, M)
n = 6 (6.12%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 6 (6.12%)
Tyrosine (Tyr, Y)
n = 1 (1.02%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 3 (3.06%)
Asparagine (Asn, N)
n = 1 (1.02%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 3 (3.06%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 1 5 3 8 9 1 2 3 0 0 0 2 1 4 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 3 0 1 8 5 0 1 3 1 1 1 0 1 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 1 1 1 1 4 0 0 3 0 1 0 0 1 0 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 3 0 0 1 0 0 0 2 1 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
27 33 19 20
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
16 29 14 40
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
5 34 39 21
ND5 (size: 1839 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 30 (4.9%)
Alanine (Ala, A)
n = 55 (8.99%)
Serine (Ser, S)
n = 42 (6.86%)
Threonine (Thr, T)
n = 65 (10.62%)
Cysteine (Cys, C)
n = 6 (0.98%)
Valine (Val, V)
n = 27 (4.41%)
Leucine (Leu, L)
n = 96 (15.69%)
Isoleucine (Ile, I)
n = 50 (8.17%)
Methionine (Met, M)
n = 29 (4.74%)
Proline (Pro, P)
n = 29 (4.74%)
Phenylalanine (Phe, F)
n = 40 (6.54%)
Tyrosine (Tyr, Y)
n = 8 (1.31%)
Tryptophan (Trp, W)
n = 14 (2.29%)
Aspartic acid (Asp, D)
n = 12 (1.96%)
Glutamic acid (Glu, E)
n = 12 (1.96%)
Asparagine (Asn, N)
n = 31 (5.07%)
Glutamine (Gln, Q)
n = 19 (3.1%)
Histidine (His, H)
n = 17 (2.78%)
Lysine (Lys, K)
n = 21 (3.43%)
Arginine (Arg, R)
n = 9 (1.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
32 18 21 26 22 26 2 17 15 4 7 7 10 3 21 19
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
8 0 6 10 29 13 3 3 9 17 1 8 10 8 3 16
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
29 19 1 8 8 13 1 3 9 2 6 1 3 12 19 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
12 10 2 4 8 19 2 0 1 8 0 0 0 1 0 13
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
136 150 208 119
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
71 179 121 242
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
34 212 210 157
ND6 (size: 522 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (13.87%)
Alanine (Ala, A)
n = 18 (10.4%)
Serine (Ser, S)
n = 12 (6.94%)
Threonine (Thr, T)
n = 6 (3.47%)
Cysteine (Cys, C)
n = 2 (1.16%)
Valine (Val, V)
n = 28 (16.18%)
Leucine (Leu, L)
n = 30 (17.34%)
Isoleucine (Ile, I)
n = 2 (1.16%)
Methionine (Met, M)
n = 5 (2.89%)
Proline (Pro, P)
n = 4 (2.31%)
Phenylalanine (Phe, F)
n = 11 (6.36%)
Tyrosine (Tyr, Y)
n = 9 (5.2%)
Tryptophan (Trp, W)
n = 5 (2.89%)
Aspartic acid (Asp, D)
n = 3 (1.73%)
Glutamic acid (Glu, E)
n = 6 (3.47%)
Asparagine (Asn, N)
n = 1 (0.58%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 1 (0.58%)
Lysine (Lys, K)
n = 1 (0.58%)
Arginine (Arg, R)
n = 5 (2.89%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 0 1 7 0 1 1 9 0 0 6 2 9 11 10 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 1 8 2 2 6 6 1 1 16 1 2 0 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 2 0 7 0 1 2 2 0 7 2 5 12 1 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 4 2 3 0 0 1 2 0 1 2 0 0 0 1 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
79 19 17 59
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
38 38 22 76
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
64 13 31 66
Total protein-coding genes (size: 11441 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 244 (6.4%)
Alanine (Ala, A)
n = 351 (9.21%)
Serine (Ser, S)
n = 238 (6.24%)
Threonine (Thr, T)
n = 307 (8.05%)
Cysteine (Cys, C)
n = 28 (0.73%)
Valine (Val, V)
n = 230 (6.03%)
Leucine (Leu, L)
n = 651 (17.08%)
Isoleucine (Ile, I)
n = 274 (7.19%)
Methionine (Met, M)
n = 154 (4.04%)
Proline (Pro, P)
n = 215 (5.64%)
Phenylalanine (Phe, F)
n = 228 (5.98%)
Tyrosine (Tyr, Y)
n = 111 (2.91%)
Tryptophan (Trp, W)
n = 121 (3.17%)
Aspartic acid (Asp, D)
n = 75 (1.97%)
Glutamic acid (Glu, E)
n = 107 (2.81%)
Asparagine (Asn, N)
n = 113 (2.96%)
Glutamine (Gln, Q)
n = 96 (2.52%)
Histidine (His, H)
n = 106 (2.78%)
Lysine (Lys, K)
n = 78 (2.05%)
Arginine (Arg, R)
n = 75 (1.97%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
155 119 100 167 126 181 34 117 80 16 58 53 92 27 117 111
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
54 14 14 85 148 93 25 34 68 88 54 46 90 65 14 79
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
122 97 9 55 65 55 10 13 40 50 61 16 26 46 67 29
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
77 84 23 20 55 68 10 11 14 42 8 1 0 8 2 105
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
1007 1000 980 826
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
522 1058 696 1537
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
328 1230 1276 979 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​S​a​l​v​e​l​i​n​u​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ f​o​n​t​i​n​a​l​i​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.