Viewing data for Tamias sibiricus


Scientific name Tamias sibiricus
Common name Siberian chipmunk
Maximum lifespan 9.60 years (Tamias sibiricus@AnAge)

Total mtDNA (size: 16558 bases) GC AT G C A T
Base content (bases) 5808 10750 3791 2017 5155 5595
Base content per 1 kb (bases) 351 649 229 122 311 338
Base content (%) 35.1% 64.9%
Total protein-coding genes (size: 11328 bases) GC AT G C A T
Base content (bases) 3940 7388 2697 1243 3659 3729
Base content per 1 kb (bases) 348 652 238 110 323 329
Base content (%) 34.8% 65.2%
D-loop (size: 1090 bases) GC AT G C A T
Base content (bases) 388 702 261 127 360 342
Base content per 1 kb (bases) 356 644 239 117 330 314
Base content (%) 35.6% 64.4%
Total tRNA-coding genes (size: 1508 bases) GC AT G C A T
Base content (bases) 513 995 300 213 453 542
Base content per 1 kb (bases) 340 660 199 141 300 359
Base content (%) 34.0% 66.0%
Total rRNA-coding genes (size: 2560 bases) GC AT G C A T
Base content (bases) 942 1618 518 424 660 958
Base content per 1 kb (bases) 368 632 202 166 258 374
Base content (%) 36.8% 63.2%
12S rRNA gene (size: 965 bases) GC AT G C A T
Base content (bases) 380 585 211 169 240 345
Base content per 1 kb (bases) 394 606 219 175 249 358
Base content (%) 39.4% 60.6%
16S rRNA gene (size: 1595 bases) GC AT G C A T
Base content (bases) 562 1033 307 255 420 613
Base content per 1 kb (bases) 352 648 192 160 263 384
Base content (%) 35.2% 64.8%

ATP6 (size: 680 bases) GC AT G C A T
Base content (bases) 234 446 167 67 222 224
Base content per 1 kb (bases) 344 656 246 99 326 329
Base content (%) 34.4% 65.6%
ATP8 (size: 204 bases) GC AT G C A T
Base content (bases) 63 141 50 13 61 80
Base content per 1 kb (bases) 309 691 245 64 299 392
Base content (%) 30.9% 69.1%
COX1 (size: 1542 bases) GC AT G C A T
Base content (bases) 568 974 324 244 513 461
Base content per 1 kb (bases) 368 632 210 158 333 299
Base content (%) 36.8% 63.2%
COX2 (size: 684 bases) GC AT G C A T
Base content (bases) 241 443 152 89 221 222
Base content per 1 kb (bases) 352 648 222 130 323 325
Base content (%) 35.2% 64.8%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 293 491 179 114 258 233
Base content per 1 kb (bases) 374 626 228 145 329 297
Base content (%) 37.4% 62.6%
CYTB (size: 1139 bases) GC AT G C A T
Base content (bases) 430 709 297 133 365 344
Base content per 1 kb (bases) 378 622 261 117 320 302
Base content (%) 37.8% 62.2%
ND1 (size: 956 bases) GC AT G C A T
Base content (bases) 359 597 257 102 287 310
Base content per 1 kb (bases) 376 624 269 107 300 324
Base content (%) 37.6% 62.4%
ND2 (size: 1042 bases) GC AT G C A T
Base content (bases) 338 704 256 82 335 369
Base content per 1 kb (bases) 324 676 246 79 321 354
Base content (%) 32.4% 67.6%
ND3 (size: 346 bases) GC AT G C A T
Base content (bases) 113 233 76 37 122 111
Base content per 1 kb (bases) 327 673 220 107 353 321
Base content (%) 32.7% 67.3%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 462 916 333 129 460 456
Base content per 1 kb (bases) 335 665 242 94 334 331
Base content (%) 33.5% 66.5%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 89 208 58 31 117 91
Base content per 1 kb (bases) 300 700 195 104 394 306
Base content (%) 30.0% 70.0%
ND5 (size: 1818 bases) GC AT G C A T
Base content (bases) 593 1225 422 171 600 625
Base content per 1 kb (bases) 326 674 232 94 330 344
Base content (%) 32.6% 67.4%
ND6 (size: 525 bases) GC AT G C A T
Base content (bases) 181 344 144 37 118 226
Base content per 1 kb (bases) 345 655 274 70 225 430
Base content (%) 34.5% 65.5%

ATP6 (size: 680 bases)
Amino acid sequence: MNENLFASFITPTMMGLPIVVLIIMFPNILFPSSNRLINNRLISFQQWLIQLVLKQMMTMHNQKGRTWSLMLISLIMFIGSTNLLGLLPH View full
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.89%)
Alanine (Ala, A)
n = 15 (6.67%)
Serine (Ser, S)
n = 14 (6.22%)
Threonine (Thr, T)
n = 21 (9.33%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 9 (4.0%)
Leucine (Leu, L)
n = 39 (17.33%)
Isoleucine (Ile, I)
n = 29 (12.89%)
Methionine (Met, M)
n = 16 (7.11%)
Proline (Pro, P)
n = 14 (6.22%)
Phenylalanine (Phe, F)
n = 13 (5.78%)
Tyrosine (Tyr, Y)
n = 2 (0.89%)
Tryptophan (Trp, W)
n = 3 (1.33%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 3 (1.33%)
Asparagine (Asn, N)
n = 12 (5.33%)
Glutamine (Gln, Q)
n = 9 (4.0%)
Histidine (His, H)
n = 6 (2.67%)
Lysine (Lys, K)
n = 4 (1.78%)
Arginine (Arg, R)
n = 5 (2.22%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
21 8 14 13 1 14 0 11 9 0 3 0 6 0 9 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 2 6 7 0 0 2 9 0 9 1 4 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 8 1 3 1 6 0 0 4 1 1 0 0 5 7 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 3 0 1 0 3 1 1 0 3 1 0 0 0 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
39 62 86 39
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
23 60 37 106
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
5 45 100 76
ATP8 (size: 204 bases)
Amino acid sequence: MPQLDTSTWFVTILSMIIALFIMFQLKISNHLYPTNPLFKDTKLIEHKSPWETKWTKIYLPLSLPLQ*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 1 (1.49%)
Serine (Ser, S)
n = 5 (7.46%)
Threonine (Thr, T)
n = 7 (10.45%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 1 (1.49%)
Leucine (Leu, L)
n = 11 (16.42%)
Isoleucine (Ile, I)
n = 7 (10.45%)
Methionine (Met, M)
n = 3 (4.48%)
Proline (Pro, P)
n = 6 (8.96%)
Phenylalanine (Phe, F)
n = 4 (5.97%)
Tyrosine (Tyr, Y)
n = 2 (2.99%)
Tryptophan (Trp, W)
n = 3 (4.48%)
Aspartic acid (Asp, D)
n = 2 (2.99%)
Glutamic acid (Glu, E)
n = 2 (2.99%)
Asparagine (Asn, N)
n = 2 (2.99%)
Glutamine (Gln, Q)
n = 3 (4.48%)
Histidine (His, H)
n = 2 (2.99%)
Lysine (Lys, K)
n = 6 (8.96%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 3 1 2 0 3 0 5 3 0 0 0 1 0 1 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 0 1 0 0 0 0 0 0 2 2 2 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 4 1 0 1 4 0 0 0 1 1 0 1 0 2 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 2 0 1 1 6 0 0 0 0 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
6 16 25 21
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
3 19 20 26
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
4 15 35 14
COX1 (size: 1542 bases)
Amino acid sequence: MFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAP View full
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.16%)
Alanine (Ala, A)
n = 42 (8.19%)
Serine (Ser, S)
n = 29 (5.65%)
Threonine (Thr, T)
n = 37 (7.21%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 38 (7.41%)
Leucine (Leu, L)
n = 59 (11.5%)
Isoleucine (Ile, I)
n = 39 (7.6%)
Methionine (Met, M)
n = 32 (6.24%)
Proline (Pro, P)
n = 28 (5.46%)
Phenylalanine (Phe, F)
n = 42 (8.19%)
Tyrosine (Tyr, Y)
n = 19 (3.7%)
Tryptophan (Trp, W)
n = 17 (3.31%)
Aspartic acid (Asp, D)
n = 16 (3.12%)
Glutamic acid (Glu, E)
n = 10 (1.95%)
Asparagine (Asn, N)
n = 16 (3.12%)
Glutamine (Gln, Q)
n = 6 (1.17%)
Histidine (His, H)
n = 18 (3.51%)
Lysine (Lys, K)
n = 9 (1.75%)
Arginine (Arg, R)
n = 8 (1.56%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
28 11 29 14 4 22 0 19 5 1 13 4 21 0 20 22
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 1 12 7 23 0 9 6 25 7 12 2 14 0 14
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 20 0 9 4 13 0 0 3 16 3 1 0 11 5 11
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 9 1 8 8 9 0 1 1 5 1 0 0 0 1 16
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
153 100 136 125
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
76 133 95 210
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 91 230 178
COX2 (size: 684 bases)
Amino acid sequence: MAYPFELGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEI View full
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 8 (3.52%)
Serine (Ser, S)
n = 21 (9.25%)
Threonine (Thr, T)
n = 17 (7.49%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 13 (5.73%)
Leucine (Leu, L)
n = 35 (15.42%)
Isoleucine (Ile, I)
n = 17 (7.49%)
Methionine (Met, M)
n = 13 (5.73%)
Proline (Pro, P)
n = 14 (6.17%)
Phenylalanine (Phe, F)
n = 7 (3.08%)
Tyrosine (Tyr, Y)
n = 10 (4.41%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 12 (5.29%)
Glutamic acid (Glu, E)
n = 15 (6.61%)
Asparagine (Asn, N)
n = 7 (3.08%)
Glutamine (Gln, Q)
n = 5 (2.2%)
Histidine (His, H)
n = 8 (3.52%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 3 11 9 3 10 1 10 4 1 6 4 3 0 6 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 2 0 3 3 2 0 2 0 6 0 4 3 7 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 8 0 5 3 9 0 3 1 9 1 0 2 2 5 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 13 2 6 6 4 0 1 0 5 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
56 56 62 54
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 56 62 85
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
8 40 98 82
COX3 (size: 784 bases)
Amino acid sequence: MTHQTHAYHMVNPSPWPLTGALSALLLTSGLVMWFHFNSSTLLTLGMLTNMLTMYQWWRDVVREGTFQGHHTMIVQKGLRYGMILFIISE View full
Amino acid frequencies:
Glycine (Gly, G)
n = 20 (7.69%)
Alanine (Ala, A)
n = 16 (6.15%)
Serine (Ser, S)
n = 22 (8.46%)
Threonine (Thr, T)
n = 21 (8.08%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 16 (6.15%)
Leucine (Leu, L)
n = 35 (13.46%)
Isoleucine (Ile, I)
n = 14 (5.38%)
Methionine (Met, M)
n = 11 (4.23%)
Proline (Pro, P)
n = 10 (3.85%)
Phenylalanine (Phe, F)
n = 22 (8.46%)
Tyrosine (Tyr, Y)
n = 10 (3.85%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 3 (1.15%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 8 (3.08%)
Glutamine (Gln, Q)
n = 7 (2.69%)
Histidine (His, H)
n = 16 (6.15%)
Lysine (Lys, K)
n = 3 (1.15%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 3 9 5 3 13 1 13 7 0 6 1 7 2 14 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 2 4 5 6 1 4 7 8 1 1 4 5 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 13 0 6 2 9 0 2 3 10 0 0 0 5 3 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 8 0 3 0 3 0 1 1 3 0 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
63 60 62 76
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 64 55 98
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
7 55 116 83
CYTB (size: 1139 bases)
Amino acid sequence: MTNIRKTHPLIKIINHSFIDLPTPSNISAWWNFGSLLGICLIIQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYMHANGASMF View full
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (6.35%)
Alanine (Ala, A)
n = 19 (5.03%)
Serine (Ser, S)
n = 25 (6.61%)
Threonine (Thr, T)
n = 26 (6.88%)
Cysteine (Cys, C)
n = 4 (1.06%)
Valine (Val, V)
n = 14 (3.7%)
Leucine (Leu, L)
n = 59 (15.61%)
Isoleucine (Ile, I)
n = 46 (12.17%)
Methionine (Met, M)
n = 15 (3.97%)
Proline (Pro, P)
n = 22 (5.82%)
Phenylalanine (Phe, F)
n = 29 (7.67%)
Tyrosine (Tyr, Y)
n = 15 (3.97%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 11 (2.91%)
Glutamic acid (Glu, E)
n = 6 (1.59%)
Asparagine (Asn, N)
n = 15 (3.97%)
Glutamine (Gln, Q)
n = 6 (1.59%)
Histidine (His, H)
n = 13 (3.44%)
Lysine (Lys, K)
n = 10 (2.65%)
Arginine (Arg, R)
n = 8 (2.12%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
30 16 13 9 11 23 2 14 5 1 7 1 5 1 13 16
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 3 6 5 8 0 2 3 19 0 3 8 11 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 13 0 6 6 10 0 1 2 6 9 1 0 4 11 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 5 1 5 6 10 0 1 2 5 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
74 94 115 96
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
51 89 76 163
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
8 114 152 105
ND1 (size: 956 bases)
Amino acid sequence: MFLMNLLLLIIPILVAMAFLTLVERKMLGYMQLRKGPNIVGPYGLLQPFADAMKLFMKEPLKPLTSSISLFIIAPSLALTLAFTMWIPIP View full
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.79%)
Alanine (Ala, A)
n = 28 (8.83%)
Serine (Ser, S)
n = 22 (6.94%)
Threonine (Thr, T)
n = 25 (7.89%)
Cysteine (Cys, C)
n = 2 (0.63%)
Valine (Val, V)
n = 10 (3.15%)
Leucine (Leu, L)
n = 60 (18.93%)
Isoleucine (Ile, I)
n = 25 (7.89%)
Methionine (Met, M)
n = 22 (6.94%)
Proline (Pro, P)
n = 22 (6.94%)
Phenylalanine (Phe, F)
n = 23 (7.26%)
Tyrosine (Tyr, Y)
n = 9 (2.84%)
Tryptophan (Trp, W)
n = 9 (2.84%)
Aspartic acid (Asp, D)
n = 4 (1.26%)
Glutamic acid (Glu, E)
n = 10 (3.15%)
Asparagine (Asn, N)
n = 11 (3.47%)
Glutamine (Gln, Q)
n = 7 (2.21%)
Histidine (His, H)
n = 2 (0.63%)
Lysine (Lys, K)
n = 8 (2.52%)
Arginine (Arg, R)
n = 7 (2.21%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 16 21 9 8 25 1 17 7 0 1 3 5 1 16 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 1 4 10 13 1 2 3 6 1 6 6 10 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 16 0 3 5 11 0 0 3 6 3 0 0 5 6 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 10 0 1 3 8 0 0 1 6 0 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
64 81 94 79
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
33 94 51 140
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
5 82 164 67
ND2 (size: 1042 bases)
Amino acid sequence: INPLTSSTIYLTLISGTLITLFSSHWLMIWVGLEMSMLAIIPILINKANPRSTEAASKYFLVQATASMILMMGSIINFMNMGQWTLMNPF View full
Amino acid frequencies:
Glycine (Gly, G)
n = 15 (4.34%)
Alanine (Ala, A)
n = 14 (4.05%)
Serine (Ser, S)
n = 33 (9.54%)
Threonine (Thr, T)
n = 32 (9.25%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 8 (2.31%)
Leucine (Leu, L)
n = 55 (15.9%)
Isoleucine (Ile, I)
n = 42 (12.14%)
Methionine (Met, M)
n = 36 (10.4%)
Proline (Pro, P)
n = 21 (6.07%)
Phenylalanine (Phe, F)
n = 17 (4.91%)
Tyrosine (Tyr, Y)
n = 7 (2.02%)
Tryptophan (Trp, W)
n = 10 (2.89%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 23 (6.65%)
Glutamine (Gln, Q)
n = 9 (2.6%)
Histidine (His, H)
n = 4 (1.16%)
Lysine (Lys, K)
n = 11 (3.18%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
33 9 33 8 9 19 0 19 9 0 2 3 3 0 12 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 1 1 6 7 0 2 2 8 3 6 5 9 1 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
15 10 0 6 7 18 0 1 1 2 5 0 0 8 15 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 5 0 0 1 10 1 0 0 3 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
43 73 146 85
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
31 98 60 158
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
8 85 163 91
ND3 (size: 1042 bases)
Amino acid sequence: INPLTSSTIYLTLISGTLITLFSSHWLMIWVGLEMSMLAIIPILINKANPRSTEAASKYFLVQATASMILMMGSIINFMNMGQWTLMNPF View full
Amino acid frequencies:
Glycine (Gly, G)
n = 15 (4.34%)
Alanine (Ala, A)
n = 14 (4.05%)
Serine (Ser, S)
n = 33 (9.54%)
Threonine (Thr, T)
n = 32 (9.25%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 8 (2.31%)
Leucine (Leu, L)
n = 55 (15.9%)
Isoleucine (Ile, I)
n = 42 (12.14%)
Methionine (Met, M)
n = 36 (10.4%)
Proline (Pro, P)
n = 21 (6.07%)
Phenylalanine (Phe, F)
n = 17 (4.91%)
Tyrosine (Tyr, Y)
n = 7 (2.02%)
Tryptophan (Trp, W)
n = 10 (2.89%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 23 (6.65%)
Glutamine (Gln, Q)
n = 9 (2.6%)
Histidine (His, H)
n = 4 (1.16%)
Lysine (Lys, K)
n = 11 (3.18%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
33 9 33 8 9 19 0 19 9 0 2 3 3 0 12 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 1 1 6 7 0 2 2 8 3 6 5 9 1 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
15 10 0 6 7 18 0 1 1 2 5 0 0 8 15 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 5 0 0 1 10 1 0 0 3 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
43 73 146 85
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
31 98 60 158
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
8 85 163 91
ND4 (size: 1378 bases)
Amino acid sequence: MLKIILPTILLAPLTWFSKNSMIWINPSIHSLLISLMVLMMLNQADDVGLTYSQTFFSDTLSTPLLILTSWLLPLMIMASQKHLSKEPLM View full
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (3.93%)
Alanine (Ala, A)
n = 29 (6.33%)
Serine (Ser, S)
n = 43 (9.39%)
Threonine (Thr, T)
n = 38 (8.3%)
Cysteine (Cys, C)
n = 3 (0.66%)
Valine (Val, V)
n = 11 (2.4%)
Leucine (Leu, L)
n = 85 (18.56%)
Isoleucine (Ile, I)
n = 51 (11.14%)
Methionine (Met, M)
n = 34 (7.42%)
Proline (Pro, P)
n = 21 (4.59%)
Phenylalanine (Phe, F)
n = 22 (4.8%)
Tyrosine (Tyr, Y)
n = 18 (3.93%)
Tryptophan (Trp, W)
n = 12 (2.62%)
Aspartic acid (Asp, D)
n = 4 (0.87%)
Glutamic acid (Glu, E)
n = 8 (1.75%)
Asparagine (Asn, N)
n = 16 (3.49%)
Glutamine (Gln, Q)
n = 12 (2.62%)
Histidine (His, H)
n = 11 (2.4%)
Lysine (Lys, K)
n = 13 (2.84%)
Arginine (Arg, R)
n = 10 (2.18%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
38 13 32 12 9 34 3 26 11 1 5 1 5 0 16 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 2 8 10 11 0 1 3 14 0 5 7 9 0 12
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 18 0 12 9 13 1 2 6 12 6 0 1 9 7 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 8 0 2 2 13 0 0 2 8 0 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
70 112 160 117
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
51 123 82 203
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
8 98 214 139
ND4L (size: 297 bases)
Amino acid sequence: MPAIIFNTFLAYTVSLLGMFIYRSHLMSSLLCLEGMMLSMFILCSLLALNFHFSLSFIIPIILLVFAACEAAVGLALLVMVSNTYGMDYV View full
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 8 (8.16%)
Serine (Ser, S)
n = 9 (9.18%)
Threonine (Thr, T)
n = 3 (3.06%)
Cysteine (Cys, C)
n = 4 (4.08%)
Valine (Val, V)
n = 6 (6.12%)
Leucine (Leu, L)
n = 20 (20.41%)
Isoleucine (Ile, I)
n = 9 (9.18%)
Methionine (Met, M)
n = 8 (8.16%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 8 (8.16%)
Tyrosine (Tyr, Y)
n = 4 (4.08%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 5 (5.1%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 2 (2.04%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 1 (1.02%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 2 7 4 1 7 0 8 2 0 0 0 6 0 5 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 3 0 2 6 0 1 1 2 0 2 0 0 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 2 0 4 0 5 0 0 0 2 2 0 0 3 2 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 2 0 1 0 0 0 0 0 1 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
21 19 25 34
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
9 22 17 51
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
1 17 49 32
ND5 (size: 1818 bases)
Amino acid sequence: INMFPSLIFMSLITLTFPIIMTLTDLNKNNKFPNYVKTSIVLALLLCLIPTMMFINHNYEFIISNWHWMTIQTFKLSMSFKLDYFSILFM View full
Amino acid frequencies:
Glycine (Gly, G)
n = 27 (4.46%)
Alanine (Ala, A)
n = 36 (5.95%)
Serine (Ser, S)
n = 48 (7.93%)
Threonine (Thr, T)
n = 54 (8.93%)
Cysteine (Cys, C)
n = 5 (0.83%)
Valine (Val, V)
n = 15 (2.48%)
Leucine (Leu, L)
n = 92 (15.21%)
Isoleucine (Ile, I)
n = 67 (11.07%)
Methionine (Met, M)
n = 38 (6.28%)
Proline (Pro, P)
n = 26 (4.3%)
Phenylalanine (Phe, F)
n = 49 (8.1%)
Tyrosine (Tyr, Y)
n = 19 (3.14%)
Tryptophan (Trp, W)
n = 12 (1.98%)
Aspartic acid (Asp, D)
n = 10 (1.65%)
Glutamic acid (Glu, E)
n = 12 (1.98%)
Asparagine (Asn, N)
n = 35 (5.79%)
Glutamine (Gln, Q)
n = 18 (2.98%)
Histidine (His, H)
n = 12 (1.98%)
Lysine (Lys, K)
n = 22 (3.64%)
Arginine (Arg, R)
n = 8 (1.32%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
49 18 36 15 6 43 1 26 17 1 4 1 10 0 31 18
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 2 3 5 15 15 1 7 3 17 0 8 6 12 0 16
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 25 1 11 5 23 2 2 5 7 12 0 1 19 16 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 10 2 3 7 21 1 1 2 5 0 0 0 1 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
100 129 223 154
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
59 157 129 261
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
12 136 273 185
ND6 (size: 525 bases)
Amino acid sequence: MTYIMYLLSLLFVLGFVGFSSKPSPIYGGLGLIISGGVGCGIVLYFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEEYPETWSSNAVIWG View full
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (14.94%)
Alanine (Ala, A)
n = 6 (3.45%)
Serine (Ser, S)
n = 14 (8.05%)
Threonine (Thr, T)
n = 6 (3.45%)
Cysteine (Cys, C)
n = 2 (1.15%)
Valine (Val, V)
n = 19 (10.92%)
Leucine (Leu, L)
n = 22 (12.64%)
Isoleucine (Ile, I)
n = 14 (8.05%)
Methionine (Met, M)
n = 14 (8.05%)
Proline (Pro, P)
n = 3 (1.72%)
Phenylalanine (Phe, F)
n = 13 (7.47%)
Tyrosine (Tyr, Y)
n = 8 (4.6%)
Tryptophan (Trp, W)
n = 6 (3.45%)
Aspartic acid (Asp, D)
n = 6 (3.45%)
Glutamic acid (Glu, E)
n = 8 (4.6%)
Asparagine (Asn, N)
n = 3 (1.72%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 1 (0.57%)
Lysine (Lys, K)
n = 1 (0.57%)
Arginine (Arg, R)
n = 2 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 1 9 1 0 0 0 14 0 0 9 0 4 6 12 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 2 0 4 0 2 0 12 1 6 7 3 0 0 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 2 0 4 0 3 1 5 1 5 3 3 7 3 0 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 2 6 6 0 0 1 2 0 0 0 1 0 0 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
65 7 45 58
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 23 27 82
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
36 7 46 86
Total protein-coding genes (size: 11395 bases)
Amino acid sequence: MFLMNLLLLIIPILVAMAFLTLVERKMLGYMQLRKGPNIVGPYGLLQPFADAMKLFMKEPLKPLTSSISLFIIAPSLALTLAFTMWIPIP View full
Amino acid frequencies:
Glycine (Gly, G)
n = 216 (5.69%)
Alanine (Ala, A)
n = 230 (6.06%)
Serine (Ser, S)
n = 291 (7.67%)
Threonine (Thr, T)
n = 293 (7.72%)
Cysteine (Cys, C)
n = 27 (0.71%)
Valine (Val, V)
n = 163 (4.3%)
Leucine (Leu, L)
n = 599 (15.79%)
Isoleucine (Ile, I)
n = 373 (9.83%)
Methionine (Met, M)
n = 247 (6.51%)
Proline (Pro, P)
n = 196 (5.17%)
Phenylalanine (Phe, F)
n = 257 (6.77%)
Tyrosine (Tyr, Y)
n = 126 (3.32%)
Tryptophan (Trp, W)
n = 105 (2.77%)
Aspartic acid (Asp, D)
n = 73 (1.92%)
Glutamic acid (Glu, E)
n = 95 (2.5%)
Asparagine (Asn, N)
n = 157 (4.14%)
Glutamine (Gln, Q)
n = 87 (2.29%)
Histidine (His, H)
n = 95 (2.5%)
Lysine (Lys, K)
n = 95 (2.5%)
Arginine (Arg, R)
n = 64 (1.69%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
264 109 219 107 55 221 9 195 82 5 57 18 77 11 162 95
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
28 10 17 49 74 104 3 42 33 122 19 61 47 87 1 82
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
68 140 3 71 43 127 4 17 29 78 48 5 12 75 82 47
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
48 82 13 39 34 91 4 8 10 44 2 1 0 4 1 100
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
777 834 1212 972
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
459 964 733 1639
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
120 810 1696 1169 

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Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.