Viewing data for Egretta garzetta


Scientific name Egretta garzetta
Common name Little egret
Maximum lifespan 22.30 years (Egretta garzetta@AnAge)

Total mtDNA (size: 17361 bases) GC AT G C A T
Base content (bases) 7859 9502 5520 2339 4033 5469
Base content per 1 kb (bases) 453 547 318 135 232 315
Base content (%) 45.3% 54.7%
Total protein-coding genes (size: 11332 bases) GC AT G C A T
Base content (bases) 5302 6030 3929 1373 2616 3414
Base content per 1 kb (bases) 468 532 347 121 231 301
Base content (%) 46.8% 53.2%
D-loop (size: 1812 bases) GC AT G C A T
Base content (bases) 629 1183 418 211 511 672
Base content per 1 kb (bases) 347 653 231 116 282 371
Base content (%) 34.7% 65.3%
Total tRNA-coding genes (size: 1551 bases) GC AT G C A T
Base content (bases) 678 873 410 268 378 495
Base content per 1 kb (bases) 437 563 264 173 244 319
Base content (%) 43.7% 56.3%
Total rRNA-coding genes (size: 2578 bases) GC AT G C A T
Base content (bases) 1206 1372 719 487 517 855
Base content per 1 kb (bases) 468 532 279 189 201 332
Base content (%) 46.8% 53.2%
12S rRNA gene (size: 971 bases) GC AT G C A T
Base content (bases) 478 493 282 196 185 308
Base content per 1 kb (bases) 492 508 290 202 191 317
Base content (%) 49.2% 50.8%
16S rRNA gene (size: 1607 bases) GC AT G C A T
Base content (bases) 728 879 437 291 332 547
Base content per 1 kb (bases) 453 547 272 181 207 340
Base content (%) 45.3% 54.7%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 320 364 252 68 158 206
Base content per 1 kb (bases) 468 532 368 99 231 301
Base content (%) 46.8% 53.2%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 75 93 65 10 39 54
Base content per 1 kb (bases) 446 554 387 60 232 321
Base content (%) 44.6% 55.4%
COX1 (size: 1551 bases) GC AT G C A T
Base content (bases) 721 830 467 254 392 438
Base content per 1 kb (bases) 465 535 301 164 253 282
Base content (%) 46.5% 53.5%
COX2 (size: 684 bases) GC AT G C A T
Base content (bases) 312 372 215 97 157 215
Base content per 1 kb (bases) 456 544 314 142 230 314
Base content (%) 45.6% 54.4%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 370 414 249 121 190 224
Base content per 1 kb (bases) 472 528 318 154 242 286
Base content (%) 47.2% 52.8%
CYTB (size: 1143 bases) GC AT G C A T
Base content (bases) 568 575 424 144 261 314
Base content per 1 kb (bases) 497 503 371 126 228 275
Base content (%) 49.7% 50.3%
ND1 (size: 978 bases) GC AT G C A T
Base content (bases) 461 517 337 124 259 258
Base content per 1 kb (bases) 471 529 345 127 265 264
Base content (%) 47.1% 52.9%
ND2 (size: 1039 bases) GC AT G C A T
Base content (bases) 454 585 349 105 246 339
Base content per 1 kb (bases) 437 563 336 101 237 326
Base content (%) 43.7% 56.3%
ND3 (size: 352 bases) GC AT G C A T
Base content (bases) 167 185 127 40 91 94
Base content per 1 kb (bases) 474 526 361 114 259 267
Base content (%) 47.4% 52.6%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 632 746 499 133 312 434
Base content per 1 kb (bases) 459 541 362 97 226 315
Base content (%) 45.9% 54.1%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 139 158 105 34 69 89
Base content per 1 kb (bases) 468 532 354 114 232 300
Base content (%) 46.8% 53.2%
ND5 (size: 1815 bases) GC AT G C A T
Base content (bases) 840 975 643 197 396 579
Base content per 1 kb (bases) 463 537 354 109 218 319
Base content (%) 46.3% 53.7%
ND6 (size: 477 bases) GC AT G C A T
Base content (bases) 248 229 200 48 50 179
Base content per 1 kb (bases) 520 480 419 101 105 375
Base content (%) 52.0% 48.0%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 18 (7.93%)
Serine (Ser, S)
n = 12 (5.29%)
Threonine (Thr, T)
n = 25 (11.01%)
Cysteine (Cys, C)
n = 1 (0.44%)
Valine (Val, V)
n = 6 (2.64%)
Leucine (Leu, L)
n = 62 (27.31%)
Isoleucine (Ile, I)
n = 17 (7.49%)
Methionine (Met, M)
n = 10 (4.41%)
Proline (Pro, P)
n = 17 (7.49%)
Phenylalanine (Phe, F)
n = 9 (3.96%)
Tyrosine (Tyr, Y)
n = 3 (1.32%)
Tryptophan (Trp, W)
n = 4 (1.76%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 10 (4.41%)
Glutamine (Gln, Q)
n = 8 (3.52%)
Histidine (His, H)
n = 4 (1.76%)
Lysine (Lys, K)
n = 3 (1.32%)
Arginine (Arg, R)
n = 5 (2.2%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
6 11 8 4 15 36 2 5 6 2 1 3 2 0 2 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 1 3 9 6 0 0 5 2 1 2 9 6 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 13 1 0 2 5 1 0 4 0 3 0 0 2 8 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 4 0 0 1 3 0 1 2 2 0 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
37 91 69 31
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
22 68 34 104
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
9 93 103 23
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPNPWFFILLMSWSVFSLIIQPKLLSFTTTNPPSTKPKVAPKTTSWTWPWT*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 1 (1.82%)
Serine (Ser, S)
n = 6 (10.91%)
Threonine (Thr, T)
n = 8 (14.55%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 2 (3.64%)
Leucine (Leu, L)
n = 6 (10.91%)
Isoleucine (Ile, I)
n = 3 (5.45%)
Methionine (Met, M)
n = 2 (3.64%)
Proline (Pro, P)
n = 9 (16.36%)
Phenylalanine (Phe, F)
n = 4 (7.27%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 0 (0%)
Asparagine (Asn, N)
n = 3 (5.45%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 4 (7.27%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 2 1 0 2 4 0 0 2 0 0 1 1 0 1 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 0 1 0 0 0 0 0 0 3 3 3 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 0 0 0 3 2 0 1 0 0 0 0 0 0 3 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 0 0 0 0 4 0 0 0 0 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
3 17 21 15
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
6 23 10 17
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
1 25 23 7
COX1 (size: 1551 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.11%)
Alanine (Ala, A)
n = 47 (9.11%)
Serine (Ser, S)
n = 26 (5.04%)
Threonine (Thr, T)
n = 41 (7.95%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 35 (6.78%)
Leucine (Leu, L)
n = 61 (11.82%)
Isoleucine (Ile, I)
n = 39 (7.56%)
Methionine (Met, M)
n = 27 (5.23%)
Proline (Pro, P)
n = 31 (6.01%)
Phenylalanine (Phe, F)
n = 42 (8.14%)
Tyrosine (Tyr, Y)
n = 18 (3.49%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 15 (2.91%)
Glutamic acid (Glu, E)
n = 10 (1.94%)
Asparagine (Asn, N)
n = 14 (2.71%)
Glutamine (Gln, Q)
n = 9 (1.74%)
Histidine (His, H)
n = 19 (3.68%)
Lysine (Lys, K)
n = 9 (1.74%)
Arginine (Arg, R)
n = 8 (1.55%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 26 25 5 11 35 4 6 7 2 5 12 15 3 9 33
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 1 8 22 15 2 7 15 21 4 5 5 21 0 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
16 14 2 3 9 11 0 2 1 7 11 1 0 3 11 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
15 10 0 1 14 7 2 0 1 7 0 0 1 0 0 16
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
154 122 134 107
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
77 142 94 204
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
23 203 210 81
COX2 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 16 (7.05%)
Serine (Ser, S)
n = 19 (8.37%)
Threonine (Thr, T)
n = 13 (5.73%)
Cysteine (Cys, C)
n = 3 (1.32%)
Valine (Val, V)
n = 13 (5.73%)
Leucine (Leu, L)
n = 31 (13.66%)
Isoleucine (Ile, I)
n = 21 (9.25%)
Methionine (Met, M)
n = 11 (4.85%)
Proline (Pro, P)
n = 13 (5.73%)
Phenylalanine (Phe, F)
n = 8 (3.52%)
Tyrosine (Tyr, Y)
n = 8 (3.52%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 12 (5.29%)
Glutamic acid (Glu, E)
n = 15 (6.61%)
Asparagine (Asn, N)
n = 5 (2.2%)
Glutamine (Gln, Q)
n = 8 (3.52%)
Histidine (His, H)
n = 9 (3.96%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 5 (2.2%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 18 10 2 9 15 2 3 6 2 4 4 5 0 3 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 3 1 8 7 0 2 1 5 0 2 5 6 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 7 0 3 6 7 0 1 2 4 4 0 0 0 5 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 11 4 0 12 4 0 0 1 4 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
64 63 57 44
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
24 58 62 84
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
9 94 96 29
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (7.31%)
Alanine (Ala, A)
n = 22 (8.46%)
Serine (Ser, S)
n = 20 (7.69%)
Threonine (Thr, T)
n = 18 (6.92%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 13 (5.0%)
Leucine (Leu, L)
n = 34 (13.08%)
Isoleucine (Ile, I)
n = 17 (6.54%)
Methionine (Met, M)
n = 9 (3.46%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 24 (9.23%)
Tyrosine (Tyr, Y)
n = 9 (3.46%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 4 (1.54%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 5 (1.92%)
Glutamine (Gln, Q)
n = 8 (3.08%)
Histidine (His, H)
n = 17 (6.54%)
Lysine (Lys, K)
n = 4 (1.54%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 14 6 2 10 17 1 4 7 1 3 4 6 0 4 20
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 1 2 7 12 1 3 5 9 2 1 6 5 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 13 0 3 5 6 0 0 6 1 8 1 0 1 4 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 5 3 1 3 4 0 0 0 5 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
66 72 59 64
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 66 55 97
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
12 111 110 28
CYTB (size: 1143 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (6.58%)
Alanine (Ala, A)
n = 27 (7.11%)
Serine (Ser, S)
n = 22 (5.79%)
Threonine (Thr, T)
n = 32 (8.42%)
Cysteine (Cys, C)
n = 4 (1.05%)
Valine (Val, V)
n = 15 (3.95%)
Leucine (Leu, L)
n = 67 (17.63%)
Isoleucine (Ile, I)
n = 30 (7.89%)
Methionine (Met, M)
n = 8 (2.11%)
Proline (Pro, P)
n = 26 (6.84%)
Phenylalanine (Phe, F)
n = 28 (7.37%)
Tyrosine (Tyr, Y)
n = 13 (3.42%)
Tryptophan (Trp, W)
n = 11 (2.89%)
Aspartic acid (Asp, D)
n = 6 (1.58%)
Glutamic acid (Glu, E)
n = 7 (1.84%)
Asparagine (Asn, N)
n = 21 (5.53%)
Glutamine (Gln, Q)
n = 8 (2.11%)
Histidine (His, H)
n = 12 (3.16%)
Lysine (Lys, K)
n = 10 (2.63%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 28 6 2 27 30 5 3 6 2 0 5 10 0 3 25
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 4 1 19 7 0 2 9 10 4 5 11 10 0 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
13 12 0 2 11 8 0 0 1 1 12 0 0 1 20 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 6 1 1 5 10 0 2 1 4 1 0 0 1 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
80 118 102 81
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
49 106 78 148
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 200 134 32
ND1 (size: 978 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (4.0%)
Alanine (Ala, A)
n = 29 (8.92%)
Serine (Ser, S)
n = 29 (8.92%)
Threonine (Thr, T)
n = 24 (7.38%)
Cysteine (Cys, C)
n = 1 (0.31%)
Valine (Val, V)
n = 13 (4.0%)
Leucine (Leu, L)
n = 65 (20.0%)
Isoleucine (Ile, I)
n = 24 (7.38%)
Methionine (Met, M)
n = 11 (3.38%)
Proline (Pro, P)
n = 26 (8.0%)
Phenylalanine (Phe, F)
n = 18 (5.54%)
Tyrosine (Tyr, Y)
n = 14 (4.31%)
Tryptophan (Trp, W)
n = 9 (2.77%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.38%)
Asparagine (Asn, N)
n = 12 (3.69%)
Glutamine (Gln, Q)
n = 5 (1.54%)
Histidine (His, H)
n = 2 (0.62%)
Lysine (Lys, K)
n = 7 (2.15%)
Arginine (Arg, R)
n = 8 (2.46%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 16 8 9 15 27 4 10 5 0 2 2 8 1 5 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 1 5 13 11 0 3 5 4 1 5 12 8 1 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
15 8 0 3 16 5 0 0 5 6 8 3 0 2 10 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 8 3 2 2 7 0 1 3 3 1 1 0 0 0 6
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
70 96 84 76
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
37 103 55 131
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
17 138 119 52
ND2 (size: 1039 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (3.19%)
Alanine (Ala, A)
n = 30 (8.7%)
Serine (Ser, S)
n = 30 (8.7%)
Threonine (Thr, T)
n = 46 (13.33%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 8 (2.32%)
Leucine (Leu, L)
n = 68 (19.71%)
Isoleucine (Ile, I)
n = 28 (8.12%)
Methionine (Met, M)
n = 19 (5.51%)
Proline (Pro, P)
n = 20 (5.8%)
Phenylalanine (Phe, F)
n = 12 (3.48%)
Tyrosine (Tyr, Y)
n = 7 (2.03%)
Tryptophan (Trp, W)
n = 10 (2.9%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 13 (3.77%)
Glutamine (Gln, Q)
n = 9 (2.61%)
Histidine (His, H)
n = 10 (2.9%)
Lysine (Lys, K)
n = 15 (4.35%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 23 14 8 14 32 2 10 7 2 2 2 4 0 1 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 1 5 11 12 2 1 2 8 0 4 7 7 2 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
19 21 0 2 12 10 1 1 4 1 6 2 2 2 11 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 4 1 0 1 14 1 0 1 2 0 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
55 98 126 67
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
30 121 60 135
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
20 130 153 43
ND3 (size: 1039 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (3.19%)
Alanine (Ala, A)
n = 30 (8.7%)
Serine (Ser, S)
n = 30 (8.7%)
Threonine (Thr, T)
n = 46 (13.33%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 8 (2.32%)
Leucine (Leu, L)
n = 68 (19.71%)
Isoleucine (Ile, I)
n = 28 (8.12%)
Methionine (Met, M)
n = 19 (5.51%)
Proline (Pro, P)
n = 20 (5.8%)
Phenylalanine (Phe, F)
n = 12 (3.48%)
Tyrosine (Tyr, Y)
n = 7 (2.03%)
Tryptophan (Trp, W)
n = 10 (2.9%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 13 (3.77%)
Glutamine (Gln, Q)
n = 9 (2.61%)
Histidine (His, H)
n = 10 (2.9%)
Lysine (Lys, K)
n = 15 (4.35%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 23 14 8 14 32 2 10 7 2 2 2 4 0 1 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 1 5 11 12 2 1 2 8 0 4 7 7 2 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
19 21 0 2 12 10 1 1 4 1 6 2 2 2 11 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 4 1 0 1 14 1 0 1 2 0 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
55 98 126 67
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
30 121 60 135
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
20 130 153 43
ND4 (size: 1378 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (3.93%)
Alanine (Ala, A)
n = 29 (6.33%)
Serine (Ser, S)
n = 40 (8.73%)
Threonine (Thr, T)
n = 55 (12.01%)
Cysteine (Cys, C)
n = 3 (0.66%)
Valine (Val, V)
n = 9 (1.97%)
Leucine (Leu, L)
n = 101 (22.05%)
Isoleucine (Ile, I)
n = 39 (8.52%)
Methionine (Met, M)
n = 23 (5.02%)
Proline (Pro, P)
n = 28 (6.11%)
Phenylalanine (Phe, F)
n = 14 (3.06%)
Tyrosine (Tyr, Y)
n = 11 (2.4%)
Tryptophan (Trp, W)
n = 12 (2.62%)
Aspartic acid (Asp, D)
n = 2 (0.44%)
Glutamic acid (Glu, E)
n = 9 (1.97%)
Asparagine (Asn, N)
n = 14 (3.06%)
Glutamine (Gln, Q)
n = 14 (3.06%)
Histidine (His, H)
n = 17 (3.71%)
Lysine (Lys, K)
n = 10 (2.18%)
Arginine (Arg, R)
n = 11 (2.4%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 32 20 9 24 57 3 8 13 1 1 3 5 0 2 12
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 3 4 14 10 1 4 7 6 1 1 13 14 0 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
25 19 1 3 11 15 0 1 10 3 8 0 0 2 12 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
17 8 1 0 2 10 0 1 2 8 0 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
67 163 152 77
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
55 141 77 186
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
11 195 205 48
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 8 (8.16%)
Serine (Ser, S)
n = 14 (14.29%)
Threonine (Thr, T)
n = 8 (8.16%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 1 (1.02%)
Leucine (Leu, L)
n = 20 (20.41%)
Isoleucine (Ile, I)
n = 4 (4.08%)
Methionine (Met, M)
n = 9 (9.18%)
Proline (Pro, P)
n = 3 (3.06%)
Phenylalanine (Phe, F)
n = 4 (4.08%)
Tyrosine (Tyr, Y)
n = 2 (2.04%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 3 (3.06%)
Asparagine (Asn, N)
n = 3 (3.06%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 6 (6.12%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 2 (2.04%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
0 4 8 1 3 14 0 2 2 0 0 0 1 0 1 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 2 1 5 2 0 0 3 1 0 1 2 0 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 4 0 1 4 4 1 0 4 1 1 0 0 0 3 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 2 1 0 1 0 0 0 1 1 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
17 31 28 23
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
14 29 18 38
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
3 45 43 8
ND5 (size: 1815 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 33 (5.46%)
Alanine (Ala, A)
n = 45 (7.45%)
Serine (Ser, S)
n = 48 (7.95%)
Threonine (Thr, T)
n = 79 (13.08%)
Cysteine (Cys, C)
n = 5 (0.83%)
Valine (Val, V)
n = 12 (1.99%)
Leucine (Leu, L)
n = 106 (17.55%)
Isoleucine (Ile, I)
n = 48 (7.95%)
Methionine (Met, M)
n = 30 (4.97%)
Proline (Pro, P)
n = 28 (4.64%)
Phenylalanine (Phe, F)
n = 32 (5.3%)
Tyrosine (Tyr, Y)
n = 15 (2.48%)
Tryptophan (Trp, W)
n = 12 (1.99%)
Aspartic acid (Asp, D)
n = 8 (1.32%)
Glutamic acid (Glu, E)
n = 12 (1.99%)
Asparagine (Asn, N)
n = 30 (4.97%)
Glutamine (Gln, Q)
n = 20 (3.31%)
Histidine (His, H)
n = 11 (1.82%)
Lysine (Lys, K)
n = 21 (3.48%)
Arginine (Arg, R)
n = 9 (1.49%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 35 27 10 33 57 3 3 20 0 3 4 4 1 4 28
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 2 3 6 29 10 0 4 12 13 4 3 12 13 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
43 31 0 4 16 16 0 3 9 3 12 0 0 2 28 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 10 2 1 7 19 2 0 4 5 0 1 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
110 171 221 103
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
72 188 117 228
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 284 241 65
ND6 (size: 477 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 30 (18.99%)
Alanine (Ala, A)
n = 10 (6.33%)
Serine (Ser, S)
n = 4 (2.53%)
Threonine (Thr, T)
n = 3 (1.9%)
Cysteine (Cys, C)
n = 3 (1.9%)
Valine (Val, V)
n = 34 (21.52%)
Leucine (Leu, L)
n = 23 (14.56%)
Isoleucine (Ile, I)
n = 3 (1.9%)
Methionine (Met, M)
n = 6 (3.8%)
Proline (Pro, P)
n = 2 (1.27%)
Phenylalanine (Phe, F)
n = 13 (8.23%)
Tyrosine (Tyr, Y)
n = 7 (4.43%)
Tryptophan (Trp, W)
n = 5 (3.16%)
Aspartic acid (Asp, D)
n = 4 (2.53%)
Glutamic acid (Glu, E)
n = 3 (1.9%)
Asparagine (Asn, N)
n = 1 (0.63%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 1 (0.63%)
Lysine (Lys, K)
n = 1 (0.63%)
Arginine (Arg, R)
n = 5 (3.16%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 0 1 2 1 0 4 0 0 0 12 1 3 18 11 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 1 2 6 0 2 2 8 1 9 12 0 0 0 2 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 0 0 0 0 0 3 1 0 2 5 3 16 1 0 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 0 3 2 2 0 1 1 0 0 4 0 1 0 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
81 15 16 47
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
45 18 17 79
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
74 15 17 53
Total protein-coding genes (size: 11349 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 221 (5.85%)
Alanine (Ala, A)
n = 290 (7.67%)
Serine (Ser, S)
n = 278 (7.35%)
Threonine (Thr, T)
n = 363 (9.6%)
Cysteine (Cys, C)
n = 28 (0.74%)
Valine (Val, V)
n = 162 (4.28%)
Leucine (Leu, L)
n = 672 (17.77%)
Isoleucine (Ile, I)
n = 283 (7.48%)
Methionine (Met, M)
n = 168 (4.44%)
Proline (Pro, P)
n = 222 (5.87%)
Phenylalanine (Phe, F)
n = 216 (5.71%)
Tyrosine (Tyr, Y)
n = 109 (2.88%)
Tryptophan (Trp, W)
n = 108 (2.86%)
Aspartic acid (Asp, D)
n = 61 (1.61%)
Glutamic acid (Glu, E)
n = 93 (2.46%)
Asparagine (Asn, N)
n = 133 (3.52%)
Glutamine (Gln, Q)
n = 97 (2.57%)
Histidine (His, H)
n = 108 (2.86%)
Lysine (Lys, K)
n = 89 (2.35%)
Arginine (Arg, R)
n = 71 (1.88%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
66 217 137 56 174 338 31 55 85 12 33 41 65 23 46 170
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
31 6 22 45 139 98 8 35 68 89 29 32 89 96 5 45
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
169 145 4 26 100 89 6 10 47 30 79 11 18 16 117 23
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
85 74 19 9 52 83 6 6 17 42 6 2 2 6 0 97
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
827 1097 1097 761
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
489 1096 696 1501
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
211 1586 1501 484 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​E​g​r​e​t​t​a​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ g​a​r​z​e​t​t​a​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.