Viewing data for Myrmecobius fasciatus
| Scientific name | Myrmecobius fasciatus |
| Common name | Numbat |
| Maximum lifespan | 11.00 years (Myrmecobius fasciatus@AnAge) |
| Total mtDNA (size: 16813 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 6538 | 10275 | 4181 | 2357 | 4739 | 5536 |
| Base content per 1 kb (bases) | 389 | 611 | 249 | 140 | 282 | 329 |
| Base content (%) | 38.9% | 61.1% | ||||
| Total protein-coding genes (size: 11332 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 4535 | 6797 | 3059 | 1476 | 3218 | 3579 |
| Base content per 1 kb (bases) | 400 | 600 | 270 | 130 | 284 | 316 |
| Base content (%) | 40.0% | 60.0% | ||||
D-loop:
No data available for this section.
| Total tRNA-coding genes (size: 1499 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 540 | 959 | 313 | 227 | 444 | 515 |
| Base content per 1 kb (bases) | 360 | 640 | 209 | 151 | 296 | 344 |
| Base content (%) | 36.0% | 64.0% | ||||
| Total rRNA-coding genes (size: 2525 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 995 | 1530 | 541 | 454 | 611 | 919 |
| Base content per 1 kb (bases) | 394 | 606 | 214 | 180 | 242 | 364 |
| Base content (%) | 39.4% | 60.6% | ||||
| 12S rRNA gene (size: 949 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 407 | 542 | 217 | 190 | 210 | 332 |
| Base content per 1 kb (bases) | 429 | 571 | 229 | 200 | 221 | 350 |
| Base content (%) | 42.9% | 57.1% | ||||
| 16S rRNA gene (size: 1576 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 588 | 988 | 324 | 264 | 401 | 587 |
| Base content per 1 kb (bases) | 373 | 627 | 206 | 168 | 254 | 372 |
| Base content (%) | 37.3% | 62.7% | ||||
| ATP6 (size: 681 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 269 | 412 | 197 | 72 | 200 | 212 |
| Base content per 1 kb (bases) | 395 | 605 | 289 | 106 | 294 | 311 |
| Base content (%) | 39.5% | 60.5% | ||||
| ATP8 (size: 210 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 77 | 133 | 46 | 31 | 68 | 65 |
| Base content per 1 kb (bases) | 367 | 633 | 219 | 148 | 324 | 310 |
| Base content (%) | 36.7% | 63.3% | ||||
| COX1 (size: 1539 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 624 | 915 | 363 | 261 | 476 | 439 |
| Base content per 1 kb (bases) | 405 | 595 | 236 | 170 | 309 | 285 |
| Base content (%) | 40.5% | 59.5% | ||||
| COX2 (size: 688 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 272 | 416 | 161 | 111 | 207 | 209 |
| Base content per 1 kb (bases) | 395 | 605 | 234 | 161 | 301 | 304 |
| Base content (%) | 39.5% | 60.5% | ||||
| COX3 (size: 784 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 332 | 452 | 212 | 120 | 236 | 216 |
| Base content per 1 kb (bases) | 423 | 577 | 270 | 153 | 301 | 276 |
| Base content (%) | 42.3% | 57.7% | ||||
| CYTB (size: 1146 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 502 | 644 | 342 | 160 | 310 | 334 |
| Base content per 1 kb (bases) | 438 | 562 | 298 | 140 | 271 | 291 |
| Base content (%) | 43.8% | 56.2% | ||||
| ND1 (size: 957 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 384 | 573 | 260 | 124 | 263 | 310 |
| Base content per 1 kb (bases) | 401 | 599 | 272 | 130 | 275 | 324 |
| Base content (%) | 40.1% | 59.9% | ||||
| ND2 (size: 1044 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 403 | 641 | 308 | 95 | 279 | 362 |
| Base content per 1 kb (bases) | 386 | 614 | 295 | 91 | 267 | 347 |
| Base content (%) | 38.6% | 61.4% | ||||
| ND3 (size: 346 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 149 | 197 | 102 | 47 | 104 | 93 |
| Base content per 1 kb (bases) | 431 | 569 | 295 | 136 | 301 | 269 |
| Base content (%) | 43.1% | 56.9% | ||||
| ND4 (size: 1378 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 542 | 836 | 375 | 167 | 399 | 437 |
| Base content per 1 kb (bases) | 393 | 607 | 272 | 121 | 290 | 317 |
| Base content (%) | 39.3% | 60.7% | ||||
| ND4L (size: 297 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 109 | 188 | 75 | 34 | 93 | 95 |
| Base content per 1 kb (bases) | 367 | 633 | 253 | 114 | 313 | 320 |
| Base content (%) | 36.7% | 63.3% | ||||
| ND5 (size: 1818 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 694 | 1124 | 480 | 214 | 511 | 613 |
| Base content per 1 kb (bases) | 382 | 618 | 264 | 118 | 281 | 337 |
| Base content (%) | 38.2% | 61.8% | ||||
| ND6 (size: 498 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 197 | 301 | 151 | 46 | 91 | 210 |
| Base content per 1 kb (bases) | 396 | 604 | 303 | 92 | 183 | 422 |
| Base content (%) | 39.6% | 60.4% | ||||
| ATP6 (size: 681 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.54%) 
Alanine (Ala, A)
n = 15 (6.64%) 
Serine (Ser, S)
n = 14 (6.19%) 
Threonine (Thr, T)
n = 25 (11.06%) 
Cysteine (Cys, C)
n = 3 (1.33%) 
Valine (Val, V)
n = 9 (3.98%) 
Leucine (Leu, L)
n = 47 (20.8%) 
Isoleucine (Ile, I)
n = 27 (11.95%) 
Methionine (Met, M)
n = 12 (5.31%) 
Proline (Pro, P)
n = 14 (6.19%) 
Phenylalanine (Phe, F)
n = 10 (4.42%) 
Tyrosine (Tyr, Y)
n = 3 (1.33%) 
Tryptophan (Trp, W)
n = 3 (1.33%) 
Aspartic acid (Asp, D)
n = 0 (0%) 
Glutamic acid (Glu, E)
n = 4 (1.77%) 
Asparagine (Asn, N)
n = 9 (3.98%) 
Glutamine (Gln, Q)
n = 8 (3.54%) 
Histidine (His, H)
n = 4 (1.77%) 
Lysine (Lys, K)
n = 5 (2.21%) 
Arginine (Arg, R)
n = 6 (2.65%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 13 | 14 | 8 | 10 | 6 | 25 | 1 | 5 | 5 | 3 | 1 | 2 | 6 | 0 | 7 | 3 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 1 | 2 | 5 | 4 | 6 | 0 | 1 | 2 | 3 | 2 | 3 | 5 | 6 | 0 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 8 | 12 | 0 | 3 | 1 | 5 | 2 | 1 | 2 | 1 | 2 | 0 | 0 | 6 | 3 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 3 | 1 | 0 | 0 | 5 | 0 | 1 | 1 | 4 | 0 | 0 | 0 | 1 | 0 | 3 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 36 | 74 | 81 | 36 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 23 | 65 | 34 | 105 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 13 | 58 | 97 | 59 | ||||||||||||
| ATP8 (size: 210 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: MPQLETSTWFYVSCFTVLGLFCAFQLKIVGIEMIYIYPPEEVLKLPEIPFPWEKKWTKIYLPLSSALLS* | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 2 (2.9%)
Alanine (Ala, A)
n = 2 (2.9%)
Serine (Ser, S)
n = 5 (7.25%)
Threonine (Thr, T)
n = 4 (5.8%)
Cysteine (Cys, C)
n = 2 (2.9%)
Valine (Val, V)
n = 4 (5.8%)
Leucine (Leu, L)
n = 10 (14.49%)
Isoleucine (Ile, I)
n = 6 (8.7%)
Methionine (Met, M)
n = 2 (2.9%)
Proline (Pro, P)
n = 7 (10.14%)
Phenylalanine (Phe, F)
n = 5 (7.25%)
Tyrosine (Tyr, Y)
n = 4 (5.8%)
Tryptophan (Trp, W)
n = 3 (4.35%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 6 (8.7%)
Asparagine (Asn, N)
n = 0 (0%)
Glutamine (Gln, Q)
n = 2 (2.9%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 5 (7.25%)
Arginine (Arg, R)
n = 0 (0%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 5 | 1 | 1 | 3 | 1 | 3 | 0 | 2 | 0 | 2 | 1 | 1 | 1 | 1 | 1 | 4 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 1 | 1 | 0 | 1 | 0 | 1 | 1 | 0 | 1 | 0 | 2 | 0 | 5 | 0 | 0 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 1 | 2 | 1 | 1 | 1 | 3 | 0 | 0 | 0 | 3 | 1 | 0 | 1 | 0 | 0 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 0 | 5 | 1 | 0 | 0 | 4 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 3 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 14 | 16 | 17 | 23 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 7 | 18 | 18 | 27 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 10 | 12 | 30 | 18 | ||||||||||||
| COX1 (size: 1539 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.18%)
Alanine (Ala, A)
n = 43 (8.4%)
Serine (Ser, S)
n = 31 (6.05%)
Threonine (Thr, T)
n = 35 (6.84%)
Cysteine (Cys, C)
n = 1 (0.2%)
Valine (Val, V)
n = 39 (7.62%)
Leucine (Leu, L)
n = 60 (11.72%)
Isoleucine (Ile, I)
n = 42 (8.2%)
Methionine (Met, M)
n = 26 (5.08%)
Proline (Pro, P)
n = 28 (5.47%)
Phenylalanine (Phe, F)
n = 43 (8.4%)
Tyrosine (Tyr, Y)
n = 19 (3.71%)
Tryptophan (Trp, W)
n = 17 (3.32%)
Aspartic acid (Asp, D)
n = 15 (2.93%)
Glutamic acid (Glu, E)
n = 9 (1.76%)
Asparagine (Asn, N)
n = 16 (3.13%)
Glutamine (Gln, Q)
n = 7 (1.37%)
Histidine (His, H)
n = 17 (3.32%)
Lysine (Lys, K)
n = 9 (1.76%)
Arginine (Arg, R)
n = 8 (1.56%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 28 | 14 | 20 | 10 | 3 | 32 | 6 | 7 | 6 | 1 | 8 | 3 | 24 | 4 | 19 | 24 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 6 | 1 | 0 | 15 | 7 | 20 | 1 | 11 | 16 | 16 | 4 | 7 | 3 | 16 | 2 | 9 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 2 | 22 | 2 | 8 | 4 | 16 | 0 | 0 | 3 | 11 | 8 | 1 | 2 | 5 | 11 | 5 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 12 | 8 | 1 | 9 | 6 | 9 | 0 | 2 | 2 | 3 | 1 | 0 | 0 | 0 | 1 | 16 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 153 | 111 | 131 | 118 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 76 | 134 | 93 | 210 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 32 | 118 | 215 | 148 | ||||||||||||
| COX2 (size: 688 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.51%)
Alanine (Ala, A)
n = 11 (4.82%)
Serine (Ser, S)
n = 15 (6.58%)
Threonine (Thr, T)
n = 18 (7.89%)
Cysteine (Cys, C)
n = 3 (1.32%)
Valine (Val, V)
n = 14 (6.14%)
Leucine (Leu, L)
n = 32 (14.04%)
Isoleucine (Ile, I)
n = 15 (6.58%)
Methionine (Met, M)
n = 19 (8.33%)
Proline (Pro, P)
n = 14 (6.14%)
Phenylalanine (Phe, F)
n = 7 (3.07%)
Tyrosine (Tyr, Y)
n = 12 (5.26%)
Tryptophan (Trp, W)
n = 5 (2.19%)
Aspartic acid (Asp, D)
n = 11 (4.82%)
Glutamic acid (Glu, E)
n = 13 (5.7%)
Asparagine (Asn, N)
n = 5 (2.19%)
Glutamine (Gln, Q)
n = 10 (4.39%)
Histidine (His, H)
n = 7 (3.07%)
Lysine (Lys, K)
n = 4 (1.75%)
Arginine (Arg, R)
n = 6 (2.63%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 8 | 7 | 12 | 7 | 3 | 11 | 2 | 9 | 6 | 4 | 5 | 4 | 3 | 2 | 6 | 1 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 7 | 2 | 1 | 4 | 3 | 4 | 0 | 2 | 1 | 1 | 4 | 6 | 1 | 6 | 1 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 5 | 6 | 2 | 2 | 3 | 5 | 1 | 1 | 3 | 10 | 2 | 0 | 0 | 2 | 3 | 4 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 10 | 3 | 6 | 5 | 3 | 1 | 2 | 2 | 1 | 1 | 0 | 0 | 0 | 0 | 5 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 57 | 60 | 65 | 47 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 26 | 54 | 62 | 87 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 28 | 47 | 82 | 72 | ||||||||||||
| COX3 (size: 784 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 21 (8.08%)
Alanine (Ala, A)
n = 15 (5.77%)
Serine (Ser, S)
n = 18 (6.92%)
Threonine (Thr, T)
n = 22 (8.46%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 14 (5.38%)
Leucine (Leu, L)
n = 34 (13.08%)
Isoleucine (Ile, I)
n = 17 (6.54%)
Methionine (Met, M)
n = 12 (4.62%)
Proline (Pro, P)
n = 11 (4.23%)
Phenylalanine (Phe, F)
n = 23 (8.85%)
Tyrosine (Tyr, Y)
n = 12 (4.62%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 4 (1.54%)
Glutamic acid (Glu, E)
n = 7 (2.69%)
Asparagine (Asn, N)
n = 4 (1.54%)
Glutamine (Gln, Q)
n = 8 (3.08%)
Histidine (His, H)
n = 18 (6.92%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 8 | 9 | 11 | 9 | 4 | 12 | 0 | 9 | 5 | 3 | 1 | 2 | 9 | 2 | 12 | 11 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 1 | 1 | 4 | 6 | 3 | 2 | 4 | 9 | 7 | 1 | 2 | 5 | 3 | 1 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 5 | 14 | 0 | 4 | 2 | 8 | 1 | 0 | 3 | 5 | 7 | 3 | 0 | 2 | 2 | 6 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 12 | 5 | 2 | 1 | 3 | 2 | 0 | 0 | 1 | 4 | 0 | 0 | 0 | 0 | 0 | 9 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 61 | 67 | 60 | 73 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 43 | 63 | 55 | 100 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 16 | 82 | 101 | 62 | ||||||||||||
| CYTB (size: 1146 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 25 (6.56%)
Alanine (Ala, A)
n = 24 (6.3%)
Serine (Ser, S)
n = 23 (6.04%)
Threonine (Thr, T)
n = 25 (6.56%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 18 (4.72%)
Leucine (Leu, L)
n = 63 (16.54%)
Isoleucine (Ile, I)
n = 37 (9.71%)
Methionine (Met, M)
n = 13 (3.41%)
Proline (Pro, P)
n = 25 (6.56%)
Phenylalanine (Phe, F)
n = 26 (6.82%)
Tyrosine (Tyr, Y)
n = 14 (3.67%)
Tryptophan (Trp, W)
n = 12 (3.15%)
Aspartic acid (Asp, D)
n = 9 (2.36%)
Glutamic acid (Glu, E)
n = 6 (1.57%)
Asparagine (Asn, N)
n = 19 (4.99%)
Glutamine (Gln, Q)
n = 7 (1.84%)
Histidine (His, H)
n = 13 (3.41%)
Lysine (Lys, K)
n = 11 (2.89%)
Arginine (Arg, R)
n = 8 (2.1%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 13 | 24 | 11 | 8 | 12 | 27 | 6 | 9 | 6 | 1 | 3 | 4 | 8 | 3 | 9 | 17 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 3 | 6 | 8 | 10 | 0 | 1 | 9 | 12 | 3 | 4 | 8 | 10 | 3 | 2 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 9 | 13 | 1 | 2 | 5 | 14 | 1 | 1 | 0 | 6 | 8 | 2 | 1 | 4 | 15 | 4 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 9 | 4 | 2 | 3 | 6 | 9 | 2 | 0 | 3 | 5 | 0 | 0 | 1 | 0 | 0 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 82 | 106 | 107 | 87 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 50 | 96 | 79 | 157 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 28 | 140 | 148 | 66 | ||||||||||||
| ND1 (size: 957 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.77%)
Alanine (Ala, A)
n = 28 (8.81%)
Serine (Ser, S)
n = 26 (8.18%)
Threonine (Thr, T)
n = 25 (7.86%)
Cysteine (Cys, C)
n = 2 (0.63%)
Valine (Val, V)
n = 11 (3.46%)
Leucine (Leu, L)
n = 57 (17.92%)
Isoleucine (Ile, I)
n = 29 (9.12%)
Methionine (Met, M)
n = 21 (6.6%)
Proline (Pro, P)
n = 18 (5.66%)
Phenylalanine (Phe, F)
n = 19 (5.97%)
Tyrosine (Tyr, Y)
n = 11 (3.46%)
Tryptophan (Trp, W)
n = 9 (2.83%)
Aspartic acid (Asp, D)
n = 5 (1.57%)
Glutamic acid (Glu, E)
n = 10 (3.14%)
Asparagine (Asn, N)
n = 12 (3.77%)
Glutamine (Gln, Q)
n = 6 (1.89%)
Histidine (His, H)
n = 1 (0.31%)
Lysine (Lys, K)
n = 8 (2.52%)
Arginine (Arg, R)
n = 8 (2.52%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 13 | 16 | 18 | 4 | 3 | 34 | 4 | 9 | 5 | 1 | 1 | 2 | 8 | 0 | 6 | 13 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 0 | 2 | 4 | 12 | 12 | 0 | 1 | 3 | 6 | 2 | 4 | 3 | 9 | 2 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 9 | 13 | 0 | 3 | 4 | 13 | 1 | 0 | 5 | 6 | 5 | 1 | 3 | 3 | 9 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 1 | 7 | 3 | 2 | 3 | 8 | 0 | 1 | 0 | 6 | 1 | 0 | 0 | 0 | 1 | 8 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 66 | 78 | 100 | 75 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 36 | 92 | 54 | 137 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 22 | 90 | 156 | 51 | ||||||||||||
| ND2 (size: 1044 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 13 (3.75%)
Alanine (Ala, A)
n = 26 (7.49%)
Serine (Ser, S)
n = 29 (8.36%)
Threonine (Thr, T)
n = 45 (12.97%)
Cysteine (Cys, C)
n = 2 (0.58%)
Valine (Val, V)
n = 5 (1.44%)
Leucine (Leu, L)
n = 53 (15.27%)
Isoleucine (Ile, I)
n = 42 (12.1%)
Methionine (Met, M)
n = 25 (7.2%)
Proline (Pro, P)
n = 19 (5.48%)
Phenylalanine (Phe, F)
n = 15 (4.32%)
Tyrosine (Tyr, Y)
n = 11 (3.17%)
Tryptophan (Trp, W)
n = 12 (3.46%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 16 (4.61%)
Glutamine (Gln, Q)
n = 10 (2.88%)
Histidine (His, H)
n = 5 (1.44%)
Lysine (Lys, K)
n = 10 (2.88%)
Arginine (Arg, R)
n = 3 (0.86%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 16 | 26 | 23 | 4 | 4 | 36 | 1 | 8 | 10 | 0 | 0 | 0 | 4 | 1 | 4 | 11 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 2 | 8 | 13 | 5 | 0 | 0 | 3 | 7 | 3 | 7 | 3 | 8 | 1 | 12 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 13 | 19 | 1 | 4 | 7 | 14 | 0 | 1 | 3 | 3 | 8 | 0 | 0 | 5 | 11 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 4 | 4 | 0 | 0 | 2 | 8 | 2 | 0 | 1 | 2 | 0 | 0 | 0 | 1 | 0 | 12 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 50 | 82 | 142 | 74 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 34 | 115 | 59 | 140 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 11 | 111 | 161 | 65 | ||||||||||||
| ND3 (size: 1044 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 13 (3.75%)
Alanine (Ala, A)
n = 26 (7.49%)
Serine (Ser, S)
n = 29 (8.36%)
Threonine (Thr, T)
n = 45 (12.97%)
Cysteine (Cys, C)
n = 2 (0.58%)
Valine (Val, V)
n = 5 (1.44%)
Leucine (Leu, L)
n = 53 (15.27%)
Isoleucine (Ile, I)
n = 42 (12.1%)
Methionine (Met, M)
n = 25 (7.2%)
Proline (Pro, P)
n = 19 (5.48%)
Phenylalanine (Phe, F)
n = 15 (4.32%)
Tyrosine (Tyr, Y)
n = 11 (3.17%)
Tryptophan (Trp, W)
n = 12 (3.46%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 16 (4.61%)
Glutamine (Gln, Q)
n = 10 (2.88%)
Histidine (His, H)
n = 5 (1.44%)
Lysine (Lys, K)
n = 10 (2.88%)
Arginine (Arg, R)
n = 3 (0.86%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 16 | 26 | 23 | 4 | 4 | 36 | 1 | 8 | 10 | 0 | 0 | 0 | 4 | 1 | 4 | 11 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 2 | 8 | 13 | 5 | 0 | 0 | 3 | 7 | 3 | 7 | 3 | 8 | 1 | 12 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 13 | 19 | 1 | 4 | 7 | 14 | 0 | 1 | 3 | 3 | 8 | 0 | 0 | 5 | 11 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 4 | 4 | 0 | 0 | 2 | 8 | 2 | 0 | 1 | 2 | 0 | 0 | 0 | 1 | 0 | 12 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 50 | 82 | 142 | 74 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 34 | 115 | 59 | 140 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 11 | 111 | 161 | 65 | ||||||||||||
| ND4 (size: 1378 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 20 (4.37%)
Alanine (Ala, A)
n = 27 (5.9%)
Serine (Ser, S)
n = 42 (9.17%)
Threonine (Thr, T)
n = 43 (9.39%)
Cysteine (Cys, C)
n = 7 (1.53%)
Valine (Val, V)
n = 18 (3.93%)
Leucine (Leu, L)
n = 92 (20.09%)
Isoleucine (Ile, I)
n = 40 (8.73%)
Methionine (Met, M)
n = 29 (6.33%)
Proline (Pro, P)
n = 22 (4.8%)
Phenylalanine (Phe, F)
n = 16 (3.49%)
Tyrosine (Tyr, Y)
n = 14 (3.06%)
Tryptophan (Trp, W)
n = 12 (2.62%)
Aspartic acid (Asp, D)
n = 3 (0.66%)
Glutamic acid (Glu, E)
n = 9 (1.97%)
Asparagine (Asn, N)
n = 16 (3.49%)
Glutamine (Gln, Q)
n = 7 (1.53%)
Histidine (His, H)
n = 18 (3.93%)
Lysine (Lys, K)
n = 14 (3.06%)
Arginine (Arg, R)
n = 10 (2.18%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 25 | 15 | 24 | 11 | 7 | 46 | 5 | 19 | 4 | 3 | 4 | 7 | 7 | 0 | 6 | 10 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 5 | 1 | 6 | 6 | 10 | 10 | 1 | 3 | 7 | 6 | 4 | 6 | 4 | 10 | 2 | 9 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 11 | 22 | 1 | 4 | 9 | 18 | 0 | 3 | 8 | 7 | 7 | 3 | 4 | 6 | 10 | 6 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 12 | 8 | 1 | 1 | 2 | 13 | 1 | 2 | 1 | 7 | 0 | 0 | 0 | 0 | 0 | 9 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 77 | 126 | 153 | 103 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 60 | 123 | 81 | 195 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 30 | 126 | 203 | 100 | ||||||||||||
| ND4L (size: 297 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 6 (6.12%)
Alanine (Ala, A)
n = 7 (7.14%)
Serine (Ser, S)
n = 6 (6.12%)
Threonine (Thr, T)
n = 4 (4.08%)
Cysteine (Cys, C)
n = 4 (4.08%)
Valine (Val, V)
n = 3 (3.06%)
Leucine (Leu, L)
n = 24 (24.49%)
Isoleucine (Ile, I)
n = 9 (9.18%)
Methionine (Met, M)
n = 11 (11.22%)
Proline (Pro, P)
n = 1 (1.02%)
Phenylalanine (Phe, F)
n = 5 (5.1%)
Tyrosine (Tyr, Y)
n = 1 (1.02%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 5 (5.1%)
Glutamine (Gln, Q)
n = 1 (1.02%)
Histidine (His, H)
n = 6 (6.12%)
Lysine (Lys, K)
n = 1 (1.02%)
Arginine (Arg, R)
n = 1 (1.02%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 5 | 4 | 10 | 2 | 3 | 14 | 1 | 4 | 1 | 0 | 0 | 0 | 3 | 0 | 2 | 3 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 0 | 4 | 2 | 2 | 2 | 1 | 2 | 1 | 3 | 0 | 0 | 0 | 1 | 0 | 2 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 1 | 0 | 1 | 2 | 0 | 4 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 5 | 2 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 4 | 2 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 19 | 29 | 30 | 21 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 11 | 18 | 18 | 52 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 4 | 28 | 47 | 20 | ||||||||||||
| ND5 (size: 1818 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 29 (4.79%)
Alanine (Ala, A)
n = 40 (6.61%)
Serine (Ser, S)
n = 47 (7.77%)
Threonine (Thr, T)
n = 57 (9.42%)
Cysteine (Cys, C)
n = 5 (0.83%)
Valine (Val, V)
n = 21 (3.47%)
Leucine (Leu, L)
n = 84 (13.88%)
Isoleucine (Ile, I)
n = 58 (9.59%)
Methionine (Met, M)
n = 46 (7.6%)
Proline (Pro, P)
n = 26 (4.3%)
Phenylalanine (Phe, F)
n = 40 (6.61%)
Tyrosine (Tyr, Y)
n = 16 (2.64%)
Tryptophan (Trp, W)
n = 12 (1.98%)
Aspartic acid (Asp, D)
n = 12 (1.98%)
Glutamic acid (Glu, E)
n = 11 (1.82%)
Asparagine (Asn, N)
n = 37 (6.12%)
Glutamine (Gln, Q)
n = 16 (2.64%)
Histidine (His, H)
n = 19 (3.14%)
Lysine (Lys, K)
n = 20 (3.31%)
Arginine (Arg, R)
n = 9 (1.49%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 31 | 27 | 42 | 11 | 8 | 37 | 7 | 20 | 13 | 3 | 4 | 2 | 11 | 4 | 10 | 30 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 0 | 5 | 11 | 13 | 16 | 0 | 8 | 8 | 10 | 3 | 7 | 8 | 9 | 2 | 9 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 14 | 32 | 2 | 8 | 9 | 18 | 1 | 5 | 6 | 6 | 10 | 3 | 1 | 11 | 26 | 7 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 12 | 10 | 1 | 3 | 9 | 16 | 4 | 0 | 1 | 8 | 0 | 0 | 0 | 1 | 0 | 9 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 113 | 133 | 229 | 131 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 66 | 159 | 132 | 249 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 35 | 188 | 252 | 131 | ||||||||||||
| ND6 (size: 498 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 24 (14.55%)
Alanine (Ala, A)
n = 11 (6.67%)
Serine (Ser, S)
n = 13 (7.88%)
Threonine (Thr, T)
n = 5 (3.03%)
Cysteine (Cys, C)
n = 3 (1.82%)
Valine (Val, V)
n = 23 (13.94%)
Leucine (Leu, L)
n = 31 (18.79%)
Isoleucine (Ile, I)
n = 5 (3.03%)
Methionine (Met, M)
n = 9 (5.45%)
Proline (Pro, P)
n = 3 (1.82%)
Phenylalanine (Phe, F)
n = 11 (6.67%)
Tyrosine (Tyr, Y)
n = 7 (4.24%)
Tryptophan (Trp, W)
n = 5 (3.03%)
Aspartic acid (Asp, D)
n = 5 (3.03%)
Glutamic acid (Glu, E)
n = 5 (3.03%)
Asparagine (Asn, N)
n = 1 (0.61%)
Glutamine (Gln, Q)
n = 1 (0.61%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 2 (1.21%)
Arginine (Arg, R)
n = 1 (0.61%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 5 | 0 | 3 | 2 | 0 | 2 | 2 | 15 | 1 | 0 | 10 | 0 | 7 | 6 | 10 | 1 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 6 | 2 | 1 | 7 | 0 | 3 | 1 | 10 | 2 | 3 | 9 | 1 | 1 | 0 | 1 | 4 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 0 | 0 | 1 | 4 | 1 | 0 | 2 | 5 | 1 | 5 | 2 | 2 | 10 | 1 | 0 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 0 | 2 | 3 | 5 | 0 | 2 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 3 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 68 | 11 | 28 | 59 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 39 | 26 | 22 | 79 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 44 | 9 | 41 | 72 | ||||||||||||
| Total protein-coding genes (size: 11386 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 219 (5.77%)
Alanine (Ala, A)
n = 257 (6.78%)
Serine (Ser, S)
n = 277 (7.3%)
Threonine (Thr, T)
n = 318 (8.38%)
Cysteine (Cys, C)
n = 38 (1.0%)
Valine (Val, V)
n = 183 (4.82%)
Leucine (Leu, L)
n = 615 (16.21%)
Isoleucine (Ile, I)
n = 334 (8.81%)
Methionine (Met, M)
n = 229 (6.04%)
Proline (Pro, P)
n = 194 (5.11%)
Phenylalanine (Phe, F)
n = 230 (6.06%)
Tyrosine (Tyr, Y)
n = 128 (3.37%)
Tryptophan (Trp, W)
n = 106 (2.79%)
Aspartic acid (Asp, D)
n = 69 (1.82%)
Glutamic acid (Glu, E)
n = 92 (2.43%)
Asparagine (Asn, N)
n = 142 (3.74%)
Glutamine (Gln, Q)
n = 86 (2.27%)
Histidine (His, H)
n = 108 (2.85%)
Lysine (Lys, K)
n = 94 (2.48%)
Arginine (Arg, R)
n = 66 (1.74%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 172 | 162 | 187 | 84 | 60 | 291 | 36 | 121 | 64 | 22 | 40 | 27 | 92 | 24 | 96 | 134 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 42 | 9 | 29 | 72 | 84 | 94 | 7 | 44 | 63 | 75 | 37 | 49 | 44 | 86 | 15 | 65 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 81 | 158 | 14 | 47 | 49 | 119 | 9 | 19 | 34 | 65 | 63 | 16 | 23 | 46 | 96 | 36 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 72 | 72 | 20 | 30 | 39 | 83 | 11 | 9 | 12 | 42 | 3 | 0 | 1 | 4 | 4 | 90 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 820 | 925 | 1171 | 878 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 483 | 993 | 727 | 1591 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 284 | 1049 | 1578 | 883 | ||||||||||||
Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​M​y​r​m​e​c​o​b​i​u​s​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ f​a​s​c​i​a​t​u​s​"​[​O​r​g​a​n​i​s​m​]​)​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
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If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.
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