Viewing data for Neocyttus rhomboidalis
| Scientific name | Neocyttus rhomboidalis |
| Common name | Spiky oreo |
| Maximum lifespan | 100.00 years (Neocyttus rhomboidalis@AnAge) |
| Total mtDNA (size: 16745 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 7330 | 9415 | 4640 | 2690 | 4523 | 4892 |
| Base content per 1 kb (bases) | 438 | 562 | 277 | 161 | 270 | 292 |
| Base content (%) | 43.8% | 56.2% | ||||
| Total protein-coding genes (size: 11409 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 5028 | 6381 | 3352 | 1676 | 3229 | 3152 |
| Base content per 1 kb (bases) | 441 | 559 | 294 | 147 | 283 | 276 |
| Base content (%) | 44.1% | 55.9% | ||||
| D-loop (size: 1125 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 422 | 703 | 254 | 168 | 342 | 361 |
| Base content per 1 kb (bases) | 375 | 625 | 226 | 149 | 304 | 321 |
| Base content (%) | 37.5% | 62.5% | ||||
| Total tRNA-coding genes (size: 1550 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 684 | 866 | 383 | 301 | 378 | 488 |
| Base content per 1 kb (bases) | 441 | 559 | 247 | 194 | 244 | 315 |
| Base content (%) | 44.1% | 55.9% | ||||
| Total rRNA-coding genes (size: 2619 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 1176 | 1443 | 638 | 538 | 560 | 883 |
| Base content per 1 kb (bases) | 449 | 551 | 244 | 205 | 214 | 337 |
| Base content (%) | 44.9% | 55.1% | ||||
| 12S rRNA gene (size: 946 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 458 | 488 | 254 | 204 | 191 | 297 |
| Base content per 1 kb (bases) | 484 | 516 | 268 | 216 | 202 | 314 |
| Base content (%) | 48.4% | 51.6% | ||||
| 16S rRNA gene (size: 1673 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 718 | 955 | 384 | 334 | 369 | 586 |
| Base content per 1 kb (bases) | 429 | 571 | 230 | 200 | 221 | 350 |
| Base content (%) | 42.9% | 57.1% | ||||
| ATP6 (size: 683 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 289 | 394 | 207 | 82 | 218 | 176 |
| Base content per 1 kb (bases) | 423 | 577 | 303 | 120 | 319 | 258 |
| Base content (%) | 42.3% | 57.7% | ||||
| ATP8 (size: 168 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 72 | 96 | 53 | 19 | 42 | 54 |
| Base content per 1 kb (bases) | 429 | 571 | 315 | 113 | 250 | 321 |
| Base content (%) | 42.9% | 57.1% | ||||
| COX1 (size: 1563 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 676 | 887 | 391 | 285 | 483 | 404 |
| Base content per 1 kb (bases) | 433 | 567 | 250 | 182 | 309 | 258 |
| Base content (%) | 43.3% | 56.7% | ||||
| COX2 (size: 691 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 293 | 398 | 181 | 112 | 200 | 198 |
| Base content per 1 kb (bases) | 424 | 576 | 262 | 162 | 289 | 287 |
| Base content (%) | 42.4% | 57.6% | ||||
| COX3 (size: 785 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 354 | 431 | 220 | 134 | 238 | 193 |
| Base content per 1 kb (bases) | 451 | 549 | 280 | 171 | 303 | 246 |
| Base content (%) | 45.1% | 54.9% | ||||
| CYTB (size: 1141 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 507 | 634 | 327 | 180 | 330 | 304 |
| Base content per 1 kb (bases) | 444 | 556 | 287 | 158 | 289 | 266 |
| Base content (%) | 44.4% | 55.6% | ||||
| ND1 (size: 975 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 428 | 547 | 284 | 144 | 290 | 257 |
| Base content per 1 kb (bases) | 439 | 561 | 291 | 148 | 297 | 264 |
| Base content (%) | 43.9% | 56.1% | ||||
| ND2 (size: 1036 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 467 | 569 | 343 | 124 | 266 | 303 |
| Base content per 1 kb (bases) | 451 | 549 | 331 | 120 | 257 | 292 |
| Base content (%) | 45.1% | 54.9% | ||||
| ND3 (size: 349 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 159 | 190 | 105 | 54 | 110 | 80 |
| Base content per 1 kb (bases) | 456 | 544 | 301 | 155 | 315 | 229 |
| Base content (%) | 45.6% | 54.4% | ||||
| ND4 (size: 1382 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 593 | 789 | 404 | 189 | 406 | 383 |
| Base content per 1 kb (bases) | 429 | 571 | 292 | 137 | 294 | 277 |
| Base content (%) | 42.9% | 57.1% | ||||
| ND4L (size: 297 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 145 | 152 | 98 | 47 | 85 | 67 |
| Base content per 1 kb (bases) | 488 | 512 | 330 | 158 | 286 | 226 |
| Base content (%) | 48.8% | 51.2% | ||||
| ND5 (size: 1839 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 808 | 1031 | 566 | 242 | 495 | 536 |
| Base content per 1 kb (bases) | 439 | 561 | 308 | 132 | 269 | 291 |
| Base content (%) | 43.9% | 56.1% | ||||
| ND6 (size: 522 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 242 | 280 | 176 | 66 | 73 | 207 |
| Base content per 1 kb (bases) | 464 | 536 | 337 | 126 | 140 | 397 |
| Base content (%) | 46.4% | 53.6% | ||||
| ATP6 (size: 683 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.87%) 
Alanine (Ala, A)
n = 18 (7.96%) 
Serine (Ser, S)
n = 9 (3.98%) 
Threonine (Thr, T)
n = 21 (9.29%) 
Cysteine (Cys, C)
n = 0 (0%) 
Valine (Val, V)
n = 12 (5.31%) 
Leucine (Leu, L)
n = 55 (24.34%) 
Isoleucine (Ile, I)
n = 21 (9.29%) 
Methionine (Met, M)
n = 7 (3.1%) 
Proline (Pro, P)
n = 17 (7.52%) 
Phenylalanine (Phe, F)
n = 14 (6.19%) 
Tyrosine (Tyr, Y)
n = 4 (1.77%) 
Tryptophan (Trp, W)
n = 5 (2.21%) 
Aspartic acid (Asp, D)
n = 1 (0.44%) 
Glutamic acid (Glu, E)
n = 4 (1.77%) 
Asparagine (Asn, N)
n = 8 (3.54%) 
Glutamine (Gln, Q)
n = 9 (3.98%) 
Histidine (His, H)
n = 5 (2.21%) 
Lysine (Lys, K)
n = 1 (0.44%) 
Arginine (Arg, R)
n = 5 (2.21%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 16 | 5 | 5 | 9 | 15 | 12 | 2 | 15 | 9 | 0 | 1 | 4 | 5 | 2 | 8 | 6 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 0 | 7 | 8 | 3 | 0 | 2 | 6 | 3 | 0 | 2 | 8 | 7 | 0 | 6 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 7 | 8 | 0 | 0 | 3 | 1 | 0 | 3 | 2 | 2 | 2 | 0 | 2 | 5 | 3 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 2 | 3 | 1 | 0 | 1 | 1 | 0 | 0 | 1 | 3 | 1 | 0 | 0 | 0 | 0 | 5 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 46 | 74 | 63 | 44 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 26 | 60 | 32 | 109 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 10 | 73 | 80 | 64 | ||||||||||||
| ATP8 (size: 168 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: MPQLNPAPWLMIFVFSWLVFLAVIPPKILAHNFTNEPTPQTTETMKPSPWNWPWH* | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 3 (5.45%)
Serine (Ser, S)
n = 2 (3.64%)
Threonine (Thr, T)
n = 5 (9.09%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 3 (5.45%)
Leucine (Leu, L)
n = 5 (9.09%)
Isoleucine (Ile, I)
n = 3 (5.45%)
Methionine (Met, M)
n = 3 (5.45%)
Proline (Pro, P)
n = 10 (18.18%)
Phenylalanine (Phe, F)
n = 4 (7.27%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 2 (3.64%)
Asparagine (Asn, N)
n = 4 (7.27%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 2 (3.64%)
Lysine (Lys, K)
n = 2 (3.64%)
Arginine (Arg, R)
n = 0 (0%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 1 | 2 | 2 | 0 | 1 | 1 | 1 | 2 | 1 | 1 | 0 | 0 | 2 | 1 | 1 | 3 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 0 | 0 | 0 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 5 | 2 | 3 | 0 | 1 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 3 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 2 | 2 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 1 | 1 | 1 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 5 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 8 | 17 | 18 | 13 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 6 | 19 | 13 | 18 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 5 | 17 | 23 | 11 | ||||||||||||
| COX1 (size: 1563 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 46 (8.85%)
Alanine (Ala, A)
n = 48 (9.23%)
Serine (Ser, S)
n = 32 (6.15%)
Threonine (Thr, T)
n = 34 (6.54%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 42 (8.08%)
Leucine (Leu, L)
n = 63 (12.12%)
Isoleucine (Ile, I)
n = 40 (7.69%)
Methionine (Met, M)
n = 24 (4.62%)
Proline (Pro, P)
n = 28 (5.38%)
Phenylalanine (Phe, F)
n = 43 (8.27%)
Tyrosine (Tyr, Y)
n = 18 (3.46%)
Tryptophan (Trp, W)
n = 17 (3.27%)
Aspartic acid (Asp, D)
n = 14 (2.69%)
Glutamic acid (Glu, E)
n = 12 (2.31%)
Asparagine (Asn, N)
n = 15 (2.88%)
Glutamine (Gln, Q)
n = 7 (1.35%)
Histidine (His, H)
n = 19 (3.65%)
Lysine (Lys, K)
n = 9 (1.73%)
Arginine (Arg, R)
n = 8 (1.54%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 31 | 9 | 15 | 16 | 15 | 14 | 1 | 17 | 7 | 0 | 13 | 6 | 19 | 4 | 29 | 14 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 9 | 0 | 1 | 10 | 22 | 16 | 0 | 3 | 12 | 14 | 17 | 6 | 12 | 7 | 3 | 2 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 9 | 23 | 0 | 6 | 5 | 15 | 0 | 2 | 4 | 9 | 9 | 3 | 0 | 8 | 7 | 5 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 14 | 8 | 4 | 7 | 7 | 9 | 0 | 2 | 1 | 3 | 2 | 0 | 1 | 0 | 0 | 14 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 162 | 108 | 129 | 122 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 79 | 136 | 94 | 212 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 44 | 147 | 181 | 149 | ||||||||||||
| COX2 (size: 691 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.93%)
Alanine (Ala, A)
n = 18 (7.86%)
Serine (Ser, S)
n = 16 (6.99%)
Threonine (Thr, T)
n = 8 (3.49%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 20 (8.73%)
Leucine (Leu, L)
n = 28 (12.23%)
Isoleucine (Ile, I)
n = 20 (8.73%)
Methionine (Met, M)
n = 11 (4.8%)
Proline (Pro, P)
n = 14 (6.11%)
Phenylalanine (Phe, F)
n = 9 (3.93%)
Tyrosine (Tyr, Y)
n = 8 (3.49%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 13 (5.68%)
Glutamic acid (Glu, E)
n = 15 (6.55%)
Asparagine (Asn, N)
n = 5 (2.18%)
Glutamine (Gln, Q)
n = 8 (3.49%)
Histidine (His, H)
n = 11 (4.8%)
Lysine (Lys, K)
n = 4 (1.75%)
Arginine (Arg, R)
n = 6 (2.62%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 16 | 4 | 8 | 10 | 4 | 9 | 0 | 5 | 8 | 0 | 6 | 4 | 8 | 2 | 6 | 3 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 1 | 1 | 3 | 7 | 6 | 2 | 2 | 2 | 2 | 3 | 2 | 7 | 5 | 0 | 2 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 2 | 4 | 0 | 1 | 9 | 3 | 0 | 2 | 1 | 5 | 3 | 1 | 0 | 4 | 1 | 5 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 6 | 14 | 1 | 3 | 10 | 4 | 0 | 1 | 2 | 3 | 0 | 0 | 0 | 0 | 0 | 4 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 75 | 62 | 51 | 42 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 25 | 53 | 64 | 88 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 12 | 66 | 83 | 69 | ||||||||||||
| COX3 (size: 785 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 21 (8.08%)
Alanine (Ala, A)
n = 23 (8.85%)
Serine (Ser, S)
n = 13 (5.0%)
Threonine (Thr, T)
n = 23 (8.85%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 16 (6.15%)
Leucine (Leu, L)
n = 32 (12.31%)
Isoleucine (Ile, I)
n = 15 (5.77%)
Methionine (Met, M)
n = 8 (3.08%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 25 (9.62%)
Tyrosine (Tyr, Y)
n = 11 (4.23%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 6 (2.31%)
Glutamic acid (Glu, E)
n = 9 (3.46%)
Asparagine (Asn, N)
n = 1 (0.38%)
Glutamine (Gln, Q)
n = 9 (3.46%)
Histidine (His, H)
n = 16 (6.15%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 10 | 5 | 7 | 18 | 3 | 6 | 2 | 3 | 8 | 1 | 6 | 5 | 4 | 1 | 13 | 12 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 1 | 1 | 6 | 7 | 9 | 1 | 0 | 9 | 4 | 8 | 3 | 6 | 3 | 0 | 4 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 6 | 13 | 0 | 4 | 3 | 3 | 0 | 0 | 3 | 7 | 4 | 1 | 0 | 1 | 0 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 13 | 8 | 1 | 2 | 4 | 2 | 0 | 0 | 0 | 5 | 0 | 0 | 0 | 0 | 0 | 11 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 75 | 71 | 52 | 63 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 43 | 68 | 54 | 96 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 16 | 81 | 86 | 78 | ||||||||||||
| CYTB (size: 1141 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 26 (6.86%)
Alanine (Ala, A)
n = 32 (8.44%)
Serine (Ser, S)
n = 20 (5.28%)
Threonine (Thr, T)
n = 23 (6.07%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 28 (7.39%)
Leucine (Leu, L)
n = 60 (15.83%)
Isoleucine (Ile, I)
n = 30 (7.92%)
Methionine (Met, M)
n = 9 (2.37%)
Proline (Pro, P)
n = 22 (5.8%)
Phenylalanine (Phe, F)
n = 31 (8.18%)
Tyrosine (Tyr, Y)
n = 14 (3.69%)
Tryptophan (Trp, W)
n = 13 (3.43%)
Aspartic acid (Asp, D)
n = 10 (2.64%)
Glutamic acid (Glu, E)
n = 5 (1.32%)
Asparagine (Asn, N)
n = 18 (4.75%)
Glutamine (Gln, Q)
n = 6 (1.58%)
Histidine (His, H)
n = 12 (3.17%)
Lysine (Lys, K)
n = 10 (2.64%)
Arginine (Arg, R)
n = 8 (2.11%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 19 | 11 | 5 | 13 | 9 | 22 | 6 | 8 | 6 | 0 | 4 | 7 | 14 | 3 | 16 | 15 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 0 | 3 | 4 | 15 | 12 | 1 | 3 | 7 | 12 | 4 | 4 | 10 | 7 | 1 | 1 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 10 | 12 | 0 | 1 | 8 | 7 | 1 | 1 | 2 | 6 | 8 | 1 | 2 | 4 | 14 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 11 | 5 | 0 | 5 | 5 | 9 | 1 | 1 | 0 | 5 | 2 | 0 | 0 | 0 | 0 | 12 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 101 | 98 | 93 | 88 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 53 | 94 | 75 | 158 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 26 | 135 | 136 | 83 | ||||||||||||
| ND1 (size: 975 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 17 (5.25%)
Alanine (Ala, A)
n = 33 (10.19%)
Serine (Ser, S)
n = 25 (7.72%)
Threonine (Thr, T)
n = 22 (6.79%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 18 (5.56%)
Leucine (Leu, L)
n = 60 (18.52%)
Isoleucine (Ile, I)
n = 25 (7.72%)
Methionine (Met, M)
n = 11 (3.4%)
Proline (Pro, P)
n = 24 (7.41%)
Phenylalanine (Phe, F)
n = 18 (5.56%)
Tyrosine (Tyr, Y)
n = 12 (3.7%)
Tryptophan (Trp, W)
n = 8 (2.47%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 12 (3.7%)
Asparagine (Asn, N)
n = 11 (3.4%)
Glutamine (Gln, Q)
n = 7 (2.16%)
Histidine (His, H)
n = 2 (0.62%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 16 | 9 | 9 | 12 | 10 | 18 | 3 | 16 | 6 | 1 | 4 | 5 | 6 | 3 | 12 | 6 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 0 | 4 | 16 | 12 | 1 | 1 | 4 | 8 | 4 | 8 | 11 | 4 | 1 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 15 | 2 | 0 | 4 | 5 | 11 | 0 | 1 | 4 | 6 | 6 | 2 | 1 | 6 | 5 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 1 | 11 | 1 | 2 | 2 | 6 | 1 | 0 | 2 | 4 | 2 | 0 | 0 | 1 | 0 | 6 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 84 | 84 | 81 | 76 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 38 | 99 | 56 | 132 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 22 | 101 | 120 | 82 | ||||||||||||
| ND2 (size: 1036 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 17 (4.94%)
Alanine (Ala, A)
n = 32 (9.3%)
Serine (Ser, S)
n = 24 (6.98%)
Threonine (Thr, T)
n = 43 (12.5%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 8 (2.33%)
Leucine (Leu, L)
n = 75 (21.8%)
Isoleucine (Ile, I)
n = 26 (7.56%)
Methionine (Met, M)
n = 20 (5.81%)
Proline (Pro, P)
n = 20 (5.81%)
Phenylalanine (Phe, F)
n = 9 (2.62%)
Tyrosine (Tyr, Y)
n = 6 (1.74%)
Tryptophan (Trp, W)
n = 11 (3.2%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 6 (1.74%)
Asparagine (Asn, N)
n = 12 (3.49%)
Glutamine (Gln, Q)
n = 14 (4.07%)
Histidine (His, H)
n = 7 (2.03%)
Lysine (Lys, K)
n = 10 (2.91%)
Arginine (Arg, R)
n = 4 (1.16%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 20 | 6 | 15 | 11 | 21 | 23 | 4 | 13 | 13 | 1 | 3 | 3 | 1 | 1 | 5 | 4 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 5 | 0 | 0 | 3 | 18 | 10 | 1 | 1 | 5 | 8 | 3 | 5 | 9 | 4 | 2 | 8 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 21 | 13 | 1 | 2 | 12 | 6 | 0 | 2 | 2 | 1 | 5 | 0 | 3 | 3 | 9 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 7 | 5 | 1 | 0 | 1 | 8 | 2 | 1 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 11 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 64 | 104 | 115 | 62 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 36 | 115 | 56 | 138 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 24 | 124 | 132 | 65 | ||||||||||||
| ND3 (size: 1036 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 17 (4.94%)
Alanine (Ala, A)
n = 32 (9.3%)
Serine (Ser, S)
n = 24 (6.98%)
Threonine (Thr, T)
n = 43 (12.5%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 8 (2.33%)
Leucine (Leu, L)
n = 75 (21.8%)
Isoleucine (Ile, I)
n = 26 (7.56%)
Methionine (Met, M)
n = 20 (5.81%)
Proline (Pro, P)
n = 20 (5.81%)
Phenylalanine (Phe, F)
n = 9 (2.62%)
Tyrosine (Tyr, Y)
n = 6 (1.74%)
Tryptophan (Trp, W)
n = 11 (3.2%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 6 (1.74%)
Asparagine (Asn, N)
n = 12 (3.49%)
Glutamine (Gln, Q)
n = 14 (4.07%)
Histidine (His, H)
n = 7 (2.03%)
Lysine (Lys, K)
n = 10 (2.91%)
Arginine (Arg, R)
n = 4 (1.16%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 20 | 6 | 15 | 11 | 21 | 23 | 4 | 13 | 13 | 1 | 3 | 3 | 1 | 1 | 5 | 4 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 5 | 0 | 0 | 3 | 18 | 10 | 1 | 1 | 5 | 8 | 3 | 5 | 9 | 4 | 2 | 8 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 21 | 13 | 1 | 2 | 12 | 6 | 0 | 2 | 2 | 1 | 5 | 0 | 3 | 3 | 9 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 7 | 5 | 1 | 0 | 1 | 8 | 2 | 1 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 11 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 64 | 104 | 115 | 62 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 36 | 115 | 56 | 138 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 24 | 124 | 132 | 65 | ||||||||||||
| ND4 (size: 1382 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 29 (6.32%)
Alanine (Ala, A)
n = 37 (8.06%)
Serine (Ser, S)
n = 30 (6.54%)
Threonine (Thr, T)
n = 44 (9.59%)
Cysteine (Cys, C)
n = 5 (1.09%)
Valine (Val, V)
n = 12 (2.61%)
Leucine (Leu, L)
n = 91 (19.83%)
Isoleucine (Ile, I)
n = 38 (8.28%)
Methionine (Met, M)
n = 28 (6.1%)
Proline (Pro, P)
n = 26 (5.66%)
Phenylalanine (Phe, F)
n = 17 (3.7%)
Tyrosine (Tyr, Y)
n = 11 (2.4%)
Tryptophan (Trp, W)
n = 18 (3.92%)
Aspartic acid (Asp, D)
n = 3 (0.65%)
Glutamic acid (Glu, E)
n = 10 (2.18%)
Asparagine (Asn, N)
n = 14 (3.05%)
Glutamine (Gln, Q)
n = 11 (2.4%)
Histidine (His, H)
n = 14 (3.05%)
Lysine (Lys, K)
n = 11 (2.4%)
Arginine (Arg, R)
n = 11 (2.4%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 25 | 13 | 23 | 19 | 20 | 19 | 2 | 30 | 8 | 3 | 5 | 0 | 7 | 0 | 12 | 5 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 5 | 1 | 4 | 10 | 18 | 8 | 1 | 3 | 12 | 9 | 5 | 7 | 13 | 6 | 0 | 7 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 23 | 13 | 1 | 9 | 8 | 6 | 0 | 3 | 4 | 6 | 5 | 4 | 1 | 4 | 10 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 11 | 6 | 4 | 0 | 3 | 11 | 0 | 0 | 3 | 6 | 2 | 0 | 0 | 0 | 0 | 14 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 91 | 122 | 142 | 105 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 70 | 130 | 74 | 186 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 28 | 152 | 166 | 114 | ||||||||||||
| ND4L (size: 297 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 6 (6.12%)
Alanine (Ala, A)
n = 14 (14.29%)
Serine (Ser, S)
n = 10 (10.2%)
Threonine (Thr, T)
n = 7 (7.14%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 2 (2.04%)
Leucine (Leu, L)
n = 22 (22.45%)
Isoleucine (Ile, I)
n = 3 (3.06%)
Methionine (Met, M)
n = 6 (6.12%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 6 (6.12%)
Tyrosine (Tyr, Y)
n = 1 (1.02%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 2 (2.04%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 1 (1.02%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 3 (3.06%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 1 | 2 | 4 | 5 | 5 | 5 | 1 | 6 | 3 | 0 | 0 | 1 | 1 | 0 | 3 | 3 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 2 | 1 | 1 | 9 | 4 | 0 | 2 | 2 | 0 | 2 | 0 | 2 | 0 | 0 | 1 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 4 | 2 | 0 | 2 | 2 | 4 | 0 | 0 | 2 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 4 | 2 | 0 | 1 | 1 | 0 | 0 | 0 | 1 | 1 | 1 | 0 | 0 | 1 | 0 | 1 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 26 | 28 | 19 | 26 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 15 | 31 | 14 | 39 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 6 | 39 | 34 | 20 | ||||||||||||
| ND5 (size: 1839 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 30 (4.9%)
Alanine (Ala, A)
n = 56 (9.15%)
Serine (Ser, S)
n = 42 (6.86%)
Threonine (Thr, T)
n = 58 (9.48%)
Cysteine (Cys, C)
n = 7 (1.14%)
Valine (Val, V)
n = 29 (4.74%)
Leucine (Leu, L)
n = 104 (16.99%)
Isoleucine (Ile, I)
n = 48 (7.84%)
Methionine (Met, M)
n = 27 (4.41%)
Proline (Pro, P)
n = 32 (5.23%)
Phenylalanine (Phe, F)
n = 38 (6.21%)
Tyrosine (Tyr, Y)
n = 10 (1.63%)
Tryptophan (Trp, W)
n = 13 (2.12%)
Aspartic acid (Asp, D)
n = 12 (1.96%)
Glutamic acid (Glu, E)
n = 12 (1.96%)
Asparagine (Asn, N)
n = 28 (4.58%)
Glutamine (Gln, Q)
n = 21 (3.43%)
Histidine (His, H)
n = 14 (2.29%)
Lysine (Lys, K)
n = 22 (3.59%)
Arginine (Arg, R)
n = 9 (1.47%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 30 | 18 | 20 | 16 | 23 | 40 | 6 | 18 | 18 | 3 | 8 | 10 | 7 | 4 | 16 | 22 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 7 | 2 | 5 | 4 | 29 | 21 | 2 | 3 | 14 | 11 | 2 | 6 | 16 | 10 | 0 | 11 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 26 | 19 | 2 | 9 | 14 | 7 | 0 | 3 | 9 | 3 | 7 | 0 | 1 | 12 | 16 | 4 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 10 | 10 | 2 | 4 | 8 | 19 | 3 | 0 | 2 | 7 | 0 | 0 | 0 | 1 | 0 | 13 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 139 | 161 | 195 | 118 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 71 | 176 | 120 | 246 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 32 | 229 | 221 | 131 | ||||||||||||
| ND6 (size: 522 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 28 (16.18%)
Alanine (Ala, A)
n = 18 (10.4%)
Serine (Ser, S)
n = 11 (6.36%)
Threonine (Thr, T)
n = 2 (1.16%)
Cysteine (Cys, C)
n = 2 (1.16%)
Valine (Val, V)
n = 24 (13.87%)
Leucine (Leu, L)
n = 33 (19.08%)
Isoleucine (Ile, I)
n = 6 (3.47%)
Methionine (Met, M)
n = 6 (3.47%)
Proline (Pro, P)
n = 6 (3.47%)
Phenylalanine (Phe, F)
n = 9 (5.2%)
Tyrosine (Tyr, Y)
n = 10 (5.78%)
Tryptophan (Trp, W)
n = 6 (3.47%)
Aspartic acid (Asp, D)
n = 1 (0.58%)
Glutamic acid (Glu, E)
n = 5 (2.89%)
Asparagine (Asn, N)
n = 1 (0.58%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 1 (0.58%)
Arginine (Arg, R)
n = 4 (2.31%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 6 | 0 | 2 | 11 | 0 | 0 | 1 | 12 | 0 | 0 | 11 | 0 | 7 | 6 | 9 | 0 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 2 | 0 | 10 | 0 | 2 | 6 | 2 | 3 | 4 | 19 | 2 | 0 | 3 | 1 | 1 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 0 | 0 | 1 | 8 | 0 | 2 | 0 | 1 | 0 | 6 | 4 | 4 | 9 | 0 | 1 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 0 | 1 | 4 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 2 | 0 | 1 | 0 | 0 | 2 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 76 | 22 | 18 | 58 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 42 | 36 | 18 | 78 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 58 | 8 | 37 | 71 | ||||||||||||
| Total protein-coding genes (size: 11431 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 246 (6.46%)
Alanine (Ala, A)
n = 340 (8.93%)
Serine (Ser, S)
n = 243 (6.38%)
Threonine (Thr, T)
n = 296 (7.78%)
Cysteine (Cys, C)
n = 26 (0.68%)
Valine (Val, V)
n = 219 (5.75%)
Leucine (Leu, L)
n = 657 (17.26%)
Isoleucine (Ile, I)
n = 282 (7.41%)
Methionine (Met, M)
n = 163 (4.28%)
Proline (Pro, P)
n = 221 (5.81%)
Phenylalanine (Phe, F)
n = 231 (6.07%)
Tyrosine (Tyr, Y)
n = 107 (2.81%)
Tryptophan (Trp, W)
n = 119 (3.13%)
Aspartic acid (Asp, D)
n = 72 (1.89%)
Glutamic acid (Glu, E)
n = 100 (2.63%)
Asparagine (Asn, N)
n = 120 (3.15%)
Glutamine (Gln, Q)
n = 100 (2.63%)
Histidine (His, H)
n = 106 (2.79%)
Lysine (Lys, K)
n = 80 (2.1%)
Arginine (Arg, R)
n = 73 (1.92%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 196 | 86 | 117 | 145 | 135 | 174 | 31 | 152 | 90 | 10 | 63 | 47 | 82 | 27 | 134 | 97 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 46 | 10 | 16 | 65 | 153 | 107 | 15 | 22 | 79 | 78 | 67 | 51 | 100 | 62 | 8 | 49 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 130 | 112 | 5 | 47 | 73 | 68 | 1 | 18 | 36 | 54 | 53 | 17 | 20 | 51 | 69 | 26 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 80 | 78 | 22 | 26 | 46 | 72 | 8 | 6 | 14 | 41 | 12 | 0 | 2 | 4 | 0 | 102 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 977 | 985 | 997 | 848 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 520 | 1046 | 689 | 1552 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 291 | 1214 | 1339 | 963 | ||||||||||||
Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​N​e​o​c​y​t​t​u​s​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ r​h​o​m​b​o​i​d​a​l​i​s​"​[​O​r​g​a​n​i​s​m​]​)​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
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If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.
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