Scientific name | Alligator sinensis |
Common name | Chinese alligator |
Maximum lifespan | 60.70 years (Alligator sinensis@AnAge) |
Total mtDNA (size: 16746 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 7699 | 9047 | 5211 | 2488 | 4118 | 4929 |
Base content per 1 kb (bases) | 460 | 540 | 311 | 149 | 246 | 294 |
Base content (%) | 46.0% | 54.0% |
Total protein-coding genes (size: 11389 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 5311 | 6078 | 3750 | 1561 | 2881 | 3197 |
Base content per 1 kb (bases) | 466 | 534 | 329 | 137 | 253 | 281 |
Base content (%) | 46.6% | 53.4% |
Total tRNA-coding genes (size: 2443 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 1095 | 1348 | 691 | 404 | 612 | 736 |
Base content per 1 kb (bases) | 448 | 552 | 283 | 165 | 251 | 301 |
Base content (%) | 44.8% | 55.2% |
Total rRNA-coding genes (size: 2564 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 1204 | 1360 | 701 | 503 | 513 | 847 |
Base content per 1 kb (bases) | 470 | 530 | 273 | 196 | 200 | 330 |
Base content (%) | 47.0% | 53.0% |
12S rRNA gene (size: 985 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 485 | 500 | 278 | 207 | 177 | 323 |
Base content per 1 kb (bases) | 492 | 508 | 282 | 210 | 180 | 328 |
Base content (%) | 49.2% | 50.8% |
16S rRNA gene (size: 1579 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 719 | 860 | 423 | 296 | 336 | 524 |
Base content per 1 kb (bases) | 455 | 545 | 268 | 187 | 213 | 332 |
Base content (%) | 45.5% | 54.5% |
ATP6 (size: 684 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 309 | 375 | 225 | 84 | 184 | 191 |
Base content per 1 kb (bases) | 452 | 548 | 329 | 123 | 269 | 279 |
Base content (%) | 45.2% | 54.8% |
ATP8 (size: 183 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 86 | 97 | 69 | 17 | 39 | 58 |
Base content per 1 kb (bases) | 470 | 530 | 377 | 93 | 213 | 317 |
Base content (%) | 47.0% | 53.0% |
COX1 (size: 1578 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 746 | 832 | 483 | 263 | 415 | 417 |
Base content per 1 kb (bases) | 473 | 527 | 306 | 167 | 263 | 264 |
Base content (%) | 47.3% | 52.7% |
COX2 (size: 688 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 322 | 366 | 221 | 101 | 170 | 196 |
Base content per 1 kb (bases) | 468 | 532 | 321 | 147 | 247 | 285 |
Base content (%) | 46.8% | 53.2% |
COX3 (size: 784 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 383 | 401 | 257 | 126 | 201 | 200 |
Base content per 1 kb (bases) | 489 | 511 | 328 | 161 | 256 | 255 |
Base content (%) | 48.9% | 51.1% |
CYTB (size: 1138 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 538 | 600 | 380 | 158 | 291 | 309 |
Base content per 1 kb (bases) | 473 | 527 | 334 | 139 | 256 | 272 |
Base content (%) | 47.3% | 52.7% |
ND1 (size: 966 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 454 | 512 | 315 | 139 | 253 | 259 |
Base content per 1 kb (bases) | 470 | 530 | 326 | 144 | 262 | 268 |
Base content (%) | 47.0% | 53.0% |
ND2 (size: 1065 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 480 | 585 | 350 | 130 | 272 | 313 |
Base content per 1 kb (bases) | 451 | 549 | 329 | 122 | 255 | 294 |
Base content (%) | 45.1% | 54.9% |
ND3 (size: 348 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 161 | 187 | 114 | 47 | 92 | 95 |
Base content per 1 kb (bases) | 463 | 537 | 328 | 135 | 264 | 273 |
Base content (%) | 46.3% | 53.7% |
ND4 (size: 1374 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 633 | 741 | 462 | 171 | 361 | 380 |
Base content per 1 kb (bases) | 461 | 539 | 336 | 124 | 263 | 277 |
Base content (%) | 46.1% | 53.9% |
ND4L (size: 297 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 133 | 164 | 95 | 38 | 81 | 83 |
Base content per 1 kb (bases) | 448 | 552 | 320 | 128 | 273 | 279 |
Base content (%) | 44.8% | 55.2% |
ND5 (size: 1812 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 842 | 970 | 605 | 237 | 453 | 517 |
Base content per 1 kb (bases) | 465 | 535 | 334 | 131 | 250 | 285 |
Base content (%) | 46.5% | 53.5% |
ND6 (size: 516 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 238 | 278 | 183 | 55 | 82 | 196 |
Base content per 1 kb (bases) | 461 | 539 | 355 | 107 | 159 | 380 |
Base content (%) | 46.1% | 53.9% |
ATP6 (size: 684 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
6 | 16 | 6 | 12 | 11 | 21 | 5 | 11 | 8 | 0 | 0 | 4 | 2 | 2 | 4 | 3 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 0 | 0 | 2 | 8 | 2 | 1 | 1 | 6 | 1 | 3 | 3 | 3 | 8 | 2 | 3 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
6 | 11 | 2 | 2 | 6 | 3 | 0 | 0 | 4 | 0 | 3 | 1 | 3 | 2 | 8 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
3 | 2 | 1 | 1 | 0 | 5 | 0 | 0 | 1 | 2 | 2 | 0 | 0 | 1 | 0 | 3 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
36 | 81 | 71 | 40 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
24 | 62 | 34 | 108 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
24 | 82 | 86 | 36 |
ATP8 (size: 183 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MPQLNPEPWLTTLLITWISFIAFLQPKITSPAPVNDPTTRKPPTIKTWPWPWTQTCLINS* | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
3 | 3 | 0 | 2 | 0 | 3 | 0 | 0 | 3 | 0 | 0 | 0 | 1 | 0 | 0 | 2 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
1 | 1 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 2 | 5 | 3 | 1 | 1 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
5 | 4 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 2 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
0 | 0 | 1 | 0 | 1 | 2 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 5 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
5 | 20 | 23 | 13 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
7 | 26 | 12 | 16 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
5 | 23 | 23 | 10 |
COX1 (size: 1578 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
17 | 20 | 25 | 10 | 19 | 19 | 3 | 8 | 9 | 1 | 2 | 15 | 16 | 6 | 16 | 27 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
4 | 0 | 2 | 5 | 22 | 12 | 2 | 2 | 11 | 22 | 8 | 1 | 17 | 10 | 3 | 3 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
18 | 17 | 1 | 6 | 15 | 7 | 1 | 1 | 4 | 6 | 13 | 3 | 4 | 4 | 14 | 5 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
14 | 8 | 2 | 5 | 10 | 8 | 1 | 1 | 2 | 5 | 1 | 1 | 0 | 0 | 0 | 12 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
148 | 120 | 138 | 120 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
75 | 140 | 100 | 211 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
40 | 223 | 179 | 84 |
COX2 (size: 688 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
6 | 10 | 11 | 5 | 9 | 8 | 6 | 3 | 6 | 1 | 1 | 5 | 6 | 1 | 2 | 8 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
3 | 0 | 5 | 2 | 6 | 5 | 0 | 1 | 2 | 3 | 2 | 2 | 5 | 4 | 2 | 4 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
5 | 5 | 1 | 1 | 10 | 5 | 1 | 0 | 3 | 3 | 6 | 1 | 1 | 1 | 7 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
10 | 11 | 0 | 3 | 8 | 4 | 0 | 3 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 4 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
56 | 63 | 60 | 50 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
26 | 58 | 60 | 85 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
19 | 100 | 76 | 34 |
COX3 (size: 784 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
6 | 7 | 7 | 8 | 10 | 10 | 2 | 3 | 5 | 3 | 3 | 7 | 6 | 0 | 7 | 15 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 0 | 1 | 2 | 13 | 5 | 0 | 1 | 8 | 5 | 4 | 2 | 7 | 2 | 0 | 1 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
11 | 14 | 0 | 2 | 3 | 7 | 0 | 0 | 6 | 5 | 8 | 1 | 2 | 0 | 3 | 2 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
14 | 5 | 3 | 1 | 4 | 2 | 0 | 0 | 1 | 4 | 0 | 0 | 0 | 0 | 0 | 11 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
67 | 70 | 59 | 65 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
42 | 69 | 55 | 95 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
17 | 118 | 86 | 40 |
CYTB (size: 1138 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
11 | 15 | 13 | 8 | 19 | 27 | 2 | 8 | 6 | 4 | 4 | 6 | 7 | 1 | 5 | 21 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
6 | 1 | 0 | 2 | 15 | 9 | 0 | 2 | 7 | 14 | 2 | 3 | 10 | 6 | 2 | 5 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
16 | 11 | 1 | 5 | 9 | 9 | 3 | 0 | 4 | 2 | 11 | 5 | 0 | 3 | 12 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
12 | 5 | 1 | 0 | 7 | 8 | 0 | 1 | 3 | 4 | 0 | 0 | 0 | 0 | 0 | 6 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
82 | 107 | 105 | 85 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
49 | 106 | 71 | 153 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
27 | 167 | 133 | 52 |
ND1 (size: 966 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
6 | 12 | 13 | 12 | 10 | 25 | 9 | 11 | 4 | 1 | 5 | 4 | 3 | 1 | 10 | 8 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
5 | 0 | 1 | 2 | 16 | 10 | 1 | 1 | 4 | 6 | 3 | 0 | 12 | 11 | 1 | 5 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
11 | 10 | 2 | 3 | 9 | 8 | 2 | 0 | 5 | 3 | 7 | 1 | 0 | 0 | 8 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
3 | 6 | 4 | 0 | 5 | 7 | 0 | 0 | 1 | 4 | 2 | 0 | 0 | 0 | 1 | 7 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
71 | 96 | 84 | 71 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
35 | 103 | 50 | 134 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
33 | 116 | 125 | 48 |
ND2 (size: 1065 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
11 | 15 | 12 | 11 | 18 | 26 | 9 | 8 | 9 | 2 | 2 | 6 | 4 | 4 | 7 | 8 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
4 | 0 | 0 | 7 | 13 | 10 | 2 | 1 | 3 | 5 | 0 | 2 | 6 | 8 | 2 | 6 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
20 | 15 | 2 | 2 | 16 | 8 | 2 | 1 | 5 | 4 | 4 | 4 | 0 | 4 | 5 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
5 | 6 | 1 | 1 | 1 | 16 | 1 | 0 | 1 | 3 | 1 | 1 | 0 | 0 | 0 | 5 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
66 | 103 | 118 | 68 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
30 | 121 | 59 | 145 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
34 | 126 | 136 | 59 |
ND3 (size: 1065 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
11 | 15 | 12 | 11 | 18 | 26 | 9 | 8 | 9 | 2 | 2 | 6 | 4 | 4 | 7 | 8 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
4 | 0 | 0 | 7 | 13 | 10 | 2 | 1 | 3 | 5 | 0 | 2 | 6 | 8 | 2 | 6 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
20 | 15 | 2 | 2 | 16 | 8 | 2 | 1 | 5 | 4 | 4 | 4 | 0 | 4 | 5 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
5 | 6 | 1 | 1 | 1 | 16 | 1 | 0 | 1 | 3 | 1 | 1 | 0 | 0 | 0 | 5 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
66 | 103 | 118 | 68 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
30 | 121 | 59 | 145 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
34 | 126 | 136 | 59 |
ND4 (size: 1374 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
15 | 19 | 23 | 21 | 24 | 30 | 8 | 11 | 16 | 0 | 0 | 3 | 9 | 0 | 7 | 10 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
8 | 1 | 2 | 7 | 22 | 11 | 3 | 3 | 6 | 4 | 3 | 3 | 15 | 9 | 2 | 13 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
15 | 15 | 1 | 3 | 10 | 9 | 2 | 2 | 8 | 2 | 9 | 2 | 7 | 3 | 13 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
10 | 6 | 0 | 1 | 6 | 8 | 0 | 1 | 3 | 3 | 2 | 0 | 0 | 0 | 1 | 8 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
84 | 147 | 143 | 84 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
48 | 140 | 75 | 195 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
39 | 175 | 162 | 82 |
ND4L (size: 297 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
2 | 5 | 6 | 3 | 4 | 8 | 4 | 1 | 1 | 0 | 1 | 3 | 0 | 0 | 1 | 3 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 2 | 2 | 1 | 4 | 2 | 1 | 1 | 3 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
3 | 7 | 0 | 2 | 3 | 5 | 0 | 1 | 1 | 0 | 1 | 0 | 1 | 0 | 5 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
3 | 1 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
18 | 26 | 33 | 22 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
11 | 29 | 15 | 44 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
9 | 40 | 35 | 15 |
ND5 (size: 1812 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
20 | 22 | 19 | 13 | 27 | 32 | 11 | 12 | 14 | 4 | 4 | 9 | 8 | 1 | 13 | 28 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
11 | 0 | 6 | 9 | 28 | 20 | 1 | 0 | 11 | 12 | 2 | 2 | 20 | 8 | 1 | 11 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
36 | 14 | 0 | 5 | 11 | 17 | 2 | 1 | 14 | 5 | 10 | 2 | 3 | 5 | 19 | 5 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
11 | 5 | 4 | 3 | 10 | 22 | 5 | 1 | 3 | 3 | 0 | 0 | 0 | 1 | 0 | 8 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
127 | 155 | 199 | 123 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
63 | 185 | 123 | 233 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
47 | 265 | 195 | 97 |
ND6 (size: 516 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
5 | 4 | 3 | 2 | 1 | 2 | 4 | 5 | 0 | 0 | 3 | 2 | 11 | 13 | 14 | 3 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
6 | 8 | 0 | 4 | 1 | 2 | 3 | 4 | 2 | 3 | 15 | 2 | 1 | 0 | 0 | 1 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
0 | 0 | 2 | 1 | 1 | 2 | 0 | 6 | 1 | 4 | 0 | 3 | 6 | 1 | 0 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
1 | 0 | 6 | 2 | 0 | 0 | 1 | 2 | 0 | 1 | 1 | 1 | 0 | 0 | 0 | 5 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
71 | 18 | 31 | 52 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
52 | 20 | 16 | 84 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
60 | 17 | 35 | 60 |
Total protein-coding genes (size: 11433 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
110 | 158 | 143 | 111 | 156 | 221 | 65 | 84 | 81 | 17 | 25 | 64 | 75 | 29 | 88 | 143 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
55 | 13 | 20 | 45 | 156 | 91 | 14 | 17 | 66 | 77 | 42 | 23 | 105 | 71 | 16 | 55 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
151 | 126 | 12 | 33 | 98 | 82 | 13 | 12 | 55 | 34 | 74 | 24 | 28 | 24 | 99 | 15 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
87 | 61 | 25 | 18 | 54 | 85 | 9 | 9 | 18 | 32 | 9 | 3 | 0 | 4 | 3 | 77 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
859 | 1036 | 1097 | 818 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
474 | 1091 | 690 | 1555 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
361 | 1504 | 1313 | 632 |
Failed to understand id: ?term=("Alligator sinensis"[Organism]) AND (refseq[filter] AND mitochondrion[filter])