Viewing data for Manouria emys


Scientific name Manouria emys
Common name East Indian upland tortoise
Maximum lifespan 19.90 years (Manouria emys@AnAge)

Total mtDNA (size: 16455 bases) GC AT G C A T
Base content (bases) 6587 9868 4418 2169 4256 5612
Base content per 1 kb (bases) 400 600 268 132 259 341
Base content (%) 40.0% 60.0%
Total protein-coding genes (size: 11345 bases) GC AT G C A T
Base content (bases) 4624 6721 3234 1390 2963 3758
Base content per 1 kb (bases) 408 592 285 123 261 331
Base content (%) 40.8% 59.2%
D-loop: No data available for this section.
Total tRNA-coding genes (size: 1551 bases) GC AT G C A T
Base content (bases) 594 957 359 235 406 551
Base content per 1 kb (bases) 383 617 231 152 262 355
Base content (%) 38.3% 61.7%
Total rRNA-coding genes (size: 2580 bases) GC AT G C A T
Base content (bases) 1056 1524 620 436 549 975
Base content per 1 kb (bases) 409 591 240 169 213 378
Base content (%) 40.9% 59.1%
12S rRNA gene (size: 970 bases) GC AT G C A T
Base content (bases) 408 562 247 161 203 359
Base content per 1 kb (bases) 421 579 255 166 209 370
Base content (%) 42.1% 57.9%
16S rRNA gene (size: 1610 bases) GC AT G C A T
Base content (bases) 648 962 373 275 346 616
Base content per 1 kb (bases) 402 598 232 171 215 383
Base content (%) 40.2% 59.8%

ATP6 (size: 681 bases) GC AT G C A T
Base content (bases) 277 404 203 74 183 221
Base content per 1 kb (bases) 407 593 298 109 269 325
Base content (%) 40.7% 59.3%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 59 109 49 10 43 66
Base content per 1 kb (bases) 351 649 292 60 256 393
Base content (%) 35.1% 64.9%
COX1 (size: 1548 bases) GC AT G C A T
Base content (bases) 649 899 382 267 460 439
Base content per 1 kb (bases) 419 581 247 172 297 284
Base content (%) 41.9% 58.1%
COX2 (size: 687 bases) GC AT G C A T
Base content (bases) 266 421 172 94 179 242
Base content per 1 kb (bases) 387 613 250 137 261 352
Base content (%) 38.7% 61.3%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 346 438 219 127 209 229
Base content per 1 kb (bases) 441 559 279 162 267 292
Base content (%) 44.1% 55.9%
CYTB (size: 1144 bases) GC AT G C A T
Base content (bases) 484 660 347 137 309 351
Base content per 1 kb (bases) 423 577 303 120 270 307
Base content (%) 42.3% 57.7%
ND1 (size: 972 bases) GC AT G C A T
Base content (bases) 402 570 279 123 272 298
Base content per 1 kb (bases) 414 586 287 127 280 307
Base content (%) 41.4% 58.6%
ND2 (size: 1041 bases) GC AT G C A T
Base content (bases) 414 627 322 92 243 384
Base content per 1 kb (bases) 398 602 309 88 233 369
Base content (%) 39.8% 60.2%
ND3 (size: 352 bases) GC AT G C A T
Base content (bases) 146 206 101 45 97 109
Base content per 1 kb (bases) 415 585 287 128 276 310
Base content (%) 41.5% 58.5%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 551 827 395 156 349 478
Base content per 1 kb (bases) 400 600 287 113 253 347
Base content (%) 40.0% 60.0%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 121 176 87 34 87 89
Base content per 1 kb (bases) 407 593 293 114 293 300
Base content (%) 40.7% 59.3%
ND5 (size: 1791 bases) GC AT G C A T
Base content (bases) 708 1083 520 188 461 622
Base content per 1 kb (bases) 395 605 290 105 257 347
Base content (%) 39.5% 60.5%
ND6 (size: 525 bases) GC AT G C A T
Base content (bases) 208 317 163 45 76 241
Base content per 1 kb (bases) 396 604 310 86 145 459
Base content (%) 39.6% 60.4%

ATP6 (size: 681 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.54%)
Alanine (Ala, A)
n = 15 (6.64%)
Serine (Ser, S)
n = 15 (6.64%)
Threonine (Thr, T)
n = 22 (9.73%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 10 (4.42%)
Leucine (Leu, L)
n = 51 (22.57%)
Isoleucine (Ile, I)
n = 22 (9.73%)
Methionine (Met, M)
n = 14 (6.19%)
Proline (Pro, P)
n = 15 (6.64%)
Phenylalanine (Phe, F)
n = 10 (4.42%)
Tyrosine (Tyr, Y)
n = 3 (1.33%)
Tryptophan (Trp, W)
n = 4 (1.77%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.77%)
Asparagine (Asn, N)
n = 10 (4.42%)
Glutamine (Gln, Q)
n = 9 (3.98%)
Histidine (His, H)
n = 3 (1.33%)
Lysine (Lys, K)
n = 4 (1.77%)
Arginine (Arg, R)
n = 6 (2.65%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 12 11 5 6 21 6 13 9 0 2 3 5 0 4 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 0 11 4 0 0 3 5 0 1 3 9 2 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 13 1 2 3 7 0 0 3 1 2 0 0 3 7 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 2 2 0 1 4 0 0 2 3 1 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
38 71 75 43
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
21 64 35 107
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 68 111 33
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPDPWFLILSSTWLMYSIVLQPKISSYLSTNNPTNKNNKTTNTKPWTWPWT*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 0 (0%)
Serine (Ser, S)
n = 6 (10.91%)
Threonine (Thr, T)
n = 8 (14.55%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 1 (1.82%)
Leucine (Leu, L)
n = 6 (10.91%)
Isoleucine (Ile, I)
n = 3 (5.45%)
Methionine (Met, M)
n = 2 (3.64%)
Proline (Pro, P)
n = 7 (12.73%)
Phenylalanine (Phe, F)
n = 1 (1.82%)
Tyrosine (Tyr, Y)
n = 2 (3.64%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 1 (1.82%)
Glutamic acid (Glu, E)
n = 0 (0%)
Asparagine (Asn, N)
n = 7 (12.73%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 4 (7.27%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 2 1 1 1 3 0 1 2 0 1 0 0 0 0 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 0 0 0 0 0 0 0 0 1 0 5 1 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 3 0 3 2 1 0 0 0 2 0 0 0 2 5 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 0 0 1 0 3 1 0 0 0 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
2 14 24 16
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
5 21 17 13
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
3 14 25 14
COX1 (size: 1548 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.13%)
Alanine (Ala, A)
n = 44 (8.54%)
Serine (Ser, S)
n = 32 (6.21%)
Threonine (Thr, T)
n = 39 (7.57%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 36 (6.99%)
Leucine (Leu, L)
n = 60 (11.65%)
Isoleucine (Ile, I)
n = 39 (7.57%)
Methionine (Met, M)
n = 31 (6.02%)
Proline (Pro, P)
n = 26 (5.05%)
Phenylalanine (Phe, F)
n = 39 (7.57%)
Tyrosine (Tyr, Y)
n = 19 (3.69%)
Tryptophan (Trp, W)
n = 17 (3.3%)
Aspartic acid (Asp, D)
n = 15 (2.91%)
Glutamic acid (Glu, E)
n = 10 (1.94%)
Asparagine (Asn, N)
n = 14 (2.72%)
Glutamine (Gln, Q)
n = 10 (1.94%)
Histidine (His, H)
n = 19 (3.69%)
Lysine (Lys, K)
n = 9 (1.75%)
Arginine (Arg, R)
n = 8 (1.55%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
20 19 28 8 7 21 9 14 10 0 8 1 23 4 20 19
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 1 10 14 16 4 9 12 17 9 4 4 17 1 13
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 13 1 8 9 11 0 1 3 12 7 3 1 5 9 11
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 9 1 6 9 9 0 1 3 4 0 0 1 0 0 14
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
152 108 137 119
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
78 137 96 205
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
37 137 206 136
COX2 (size: 687 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.51%)
Alanine (Ala, A)
n = 12 (5.26%)
Serine (Ser, S)
n = 14 (6.14%)
Threonine (Thr, T)
n = 15 (6.58%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 16 (7.02%)
Leucine (Leu, L)
n = 28 (12.28%)
Isoleucine (Ile, I)
n = 18 (7.89%)
Methionine (Met, M)
n = 18 (7.89%)
Proline (Pro, P)
n = 14 (6.14%)
Phenylalanine (Phe, F)
n = 9 (3.95%)
Tyrosine (Tyr, Y)
n = 9 (3.95%)
Tryptophan (Trp, W)
n = 5 (2.19%)
Aspartic acid (Asp, D)
n = 9 (3.95%)
Glutamic acid (Glu, E)
n = 14 (6.14%)
Asparagine (Asn, N)
n = 9 (3.95%)
Glutamine (Gln, Q)
n = 7 (3.07%)
Histidine (His, H)
n = 11 (4.82%)
Lysine (Lys, K)
n = 4 (1.75%)
Arginine (Arg, R)
n = 6 (2.63%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 8 17 3 3 16 0 6 6 1 3 3 9 1 5 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 2 3 2 7 0 1 0 3 4 1 1 8 4 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 4 0 2 2 8 0 0 2 1 8 0 0 3 6 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 13 1 4 5 4 0 0 1 5 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
59 60 66 44
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
23 53 64 89
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
12 59 112 46
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 21 (8.08%)
Alanine (Ala, A)
n = 23 (8.85%)
Serine (Ser, S)
n = 16 (6.15%)
Threonine (Thr, T)
n = 22 (8.46%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 16 (6.15%)
Leucine (Leu, L)
n = 30 (11.54%)
Isoleucine (Ile, I)
n = 14 (5.38%)
Methionine (Met, M)
n = 11 (4.23%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 23 (8.85%)
Tyrosine (Tyr, Y)
n = 13 (5.0%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 4 (1.54%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 5 (1.92%)
Glutamine (Gln, Q)
n = 8 (3.08%)
Histidine (His, H)
n = 15 (5.77%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 10 7 1 2 18 4 4 8 0 4 3 8 1 9 14
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 1 7 9 7 0 2 9 10 0 1 3 8 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 11 1 1 1 9 2 0 3 4 9 0 1 2 3 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 8 0 3 1 2 0 0 0 5 0 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
72 65 57 67
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
42 70 55 94
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
13 84 117 47
CYTB (size: 1144 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (6.84%)
Alanine (Ala, A)
n = 22 (5.79%)
Serine (Ser, S)
n = 25 (6.58%)
Threonine (Thr, T)
n = 29 (7.63%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 12 (3.16%)
Leucine (Leu, L)
n = 62 (16.32%)
Isoleucine (Ile, I)
n = 37 (9.74%)
Methionine (Met, M)
n = 17 (4.47%)
Proline (Pro, P)
n = 23 (6.05%)
Phenylalanine (Phe, F)
n = 28 (7.37%)
Tyrosine (Tyr, Y)
n = 14 (3.68%)
Tryptophan (Trp, W)
n = 11 (2.89%)
Aspartic acid (Asp, D)
n = 9 (2.37%)
Glutamic acid (Glu, E)
n = 5 (1.32%)
Asparagine (Asn, N)
n = 21 (5.53%)
Glutamine (Gln, Q)
n = 8 (2.11%)
Histidine (His, H)
n = 11 (2.89%)
Lysine (Lys, K)
n = 10 (2.63%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 22 15 11 8 26 3 13 8 0 2 2 7 1 3 25
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 2 4 12 6 0 3 10 10 3 1 7 14 1 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 10 1 1 5 16 1 1 1 1 13 0 1 5 16 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 5 0 2 7 10 0 0 2 6 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
74 98 116 93
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
50 97 78 156
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
13 152 157 59
ND1 (size: 972 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 16 (4.95%)
Alanine (Ala, A)
n = 23 (7.12%)
Serine (Ser, S)
n = 31 (9.6%)
Threonine (Thr, T)
n = 17 (5.26%)
Cysteine (Cys, C)
n = 1 (0.31%)
Valine (Val, V)
n = 12 (3.72%)
Leucine (Leu, L)
n = 59 (18.27%)
Isoleucine (Ile, I)
n = 25 (7.74%)
Methionine (Met, M)
n = 21 (6.5%)
Proline (Pro, P)
n = 24 (7.43%)
Phenylalanine (Phe, F)
n = 21 (6.5%)
Tyrosine (Tyr, Y)
n = 13 (4.02%)
Tryptophan (Trp, W)
n = 8 (2.48%)
Aspartic acid (Asp, D)
n = 5 (1.55%)
Glutamic acid (Glu, E)
n = 11 (3.41%)
Asparagine (Asn, N)
n = 12 (3.72%)
Glutamine (Gln, Q)
n = 6 (1.86%)
Histidine (His, H)
n = 3 (0.93%)
Lysine (Lys, K)
n = 8 (2.48%)
Arginine (Arg, R)
n = 7 (2.17%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 15 18 4 8 32 5 8 6 0 0 5 6 1 9 12
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 0 8 8 7 0 0 3 9 4 2 2 19 1 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 6 0 4 10 13 2 0 2 5 8 2 2 2 10 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 11 0 2 3 8 0 0 1 5 1 0 0 0 1 6
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
67 89 85 83
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
34 93 59 138
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
22 97 154 51
ND2 (size: 1041 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.47%)
Alanine (Ala, A)
n = 23 (6.65%)
Serine (Ser, S)
n = 24 (6.94%)
Threonine (Thr, T)
n = 54 (15.61%)
Cysteine (Cys, C)
n = 2 (0.58%)
Valine (Val, V)
n = 5 (1.45%)
Leucine (Leu, L)
n = 61 (17.63%)
Isoleucine (Ile, I)
n = 35 (10.12%)
Methionine (Met, M)
n = 24 (6.94%)
Proline (Pro, P)
n = 19 (5.49%)
Phenylalanine (Phe, F)
n = 9 (2.6%)
Tyrosine (Tyr, Y)
n = 8 (2.31%)
Tryptophan (Trp, W)
n = 11 (3.18%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 13 (3.76%)
Glutamine (Gln, Q)
n = 14 (4.05%)
Histidine (His, H)
n = 9 (2.6%)
Lysine (Lys, K)
n = 13 (3.76%)
Arginine (Arg, R)
n = 4 (1.16%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 25 22 8 7 32 1 13 14 0 2 0 3 0 2 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 2 3 11 8 1 0 3 8 1 2 3 13 1 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
19 26 0 5 6 6 1 0 6 1 7 0 0 3 10 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 5 0 0 1 10 3 0 0 4 0 0 0 0 1 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
46 94 145 62
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
35 114 64 134
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
11 114 175 47
ND3 (size: 1041 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.47%)
Alanine (Ala, A)
n = 23 (6.65%)
Serine (Ser, S)
n = 24 (6.94%)
Threonine (Thr, T)
n = 54 (15.61%)
Cysteine (Cys, C)
n = 2 (0.58%)
Valine (Val, V)
n = 5 (1.45%)
Leucine (Leu, L)
n = 61 (17.63%)
Isoleucine (Ile, I)
n = 35 (10.12%)
Methionine (Met, M)
n = 24 (6.94%)
Proline (Pro, P)
n = 19 (5.49%)
Phenylalanine (Phe, F)
n = 9 (2.6%)
Tyrosine (Tyr, Y)
n = 8 (2.31%)
Tryptophan (Trp, W)
n = 11 (3.18%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 13 (3.76%)
Glutamine (Gln, Q)
n = 14 (4.05%)
Histidine (His, H)
n = 9 (2.6%)
Lysine (Lys, K)
n = 13 (3.76%)
Arginine (Arg, R)
n = 4 (1.16%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 25 22 8 7 32 1 13 14 0 2 0 3 0 2 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 2 3 11 8 1 0 3 8 1 2 3 13 1 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
19 26 0 5 6 6 1 0 6 1 7 0 0 3 10 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 5 0 0 1 10 3 0 0 4 0 0 0 0 1 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
46 94 145 62
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
35 114 64 134
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
11 114 175 47
ND4 (size: 1378 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 20 (4.37%)
Alanine (Ala, A)
n = 30 (6.55%)
Serine (Ser, S)
n = 33 (7.21%)
Threonine (Thr, T)
n = 57 (12.45%)
Cysteine (Cys, C)
n = 5 (1.09%)
Valine (Val, V)
n = 12 (2.62%)
Leucine (Leu, L)
n = 83 (18.12%)
Isoleucine (Ile, I)
n = 40 (8.73%)
Methionine (Met, M)
n = 33 (7.21%)
Proline (Pro, P)
n = 25 (5.46%)
Phenylalanine (Phe, F)
n = 16 (3.49%)
Tyrosine (Tyr, Y)
n = 12 (2.62%)
Tryptophan (Trp, W)
n = 15 (3.28%)
Aspartic acid (Asp, D)
n = 3 (0.66%)
Glutamic acid (Glu, E)
n = 11 (2.4%)
Asparagine (Asn, N)
n = 14 (3.06%)
Glutamine (Gln, Q)
n = 15 (3.28%)
Histidine (His, H)
n = 13 (2.84%)
Lysine (Lys, K)
n = 12 (2.62%)
Arginine (Arg, R)
n = 10 (2.18%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
19 21 27 5 10 48 4 15 12 3 1 0 11 0 4 12
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 2 3 10 10 7 3 2 6 10 2 1 5 19 0 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
21 24 2 2 5 19 0 1 6 3 9 1 1 4 10 7
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 11 0 1 2 12 0 2 1 6 1 0 0 0 0 14
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
76 130 163 90
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
57 138 80 184
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
23 127 235 74
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 5 (5.1%)
Alanine (Ala, A)
n = 5 (5.1%)
Serine (Ser, S)
n = 15 (15.31%)
Threonine (Thr, T)
n = 8 (8.16%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 3 (3.06%)
Leucine (Leu, L)
n = 20 (20.41%)
Isoleucine (Ile, I)
n = 5 (5.1%)
Methionine (Met, M)
n = 7 (7.14%)
Proline (Pro, P)
n = 3 (3.06%)
Phenylalanine (Phe, F)
n = 5 (5.1%)
Tyrosine (Tyr, Y)
n = 2 (2.04%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 2 (2.04%)
Glutamine (Gln, Q)
n = 4 (4.08%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 3 (3.06%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 4 6 2 0 12 2 4 3 1 2 0 1 0 2 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 2 1 0 3 2 0 1 2 2 0 0 1 2 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 3 0 2 3 8 0 0 2 2 0 0 0 1 1 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 2 0 0 1 0 0 0 1 2 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
16 30 24 29
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
14 29 16 40
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
4 28 49 18
ND5 (size: 1791 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 28 (4.7%)
Alanine (Ala, A)
n = 44 (7.38%)
Serine (Ser, S)
n = 47 (7.89%)
Threonine (Thr, T)
n = 64 (10.74%)
Cysteine (Cys, C)
n = 5 (0.84%)
Valine (Val, V)
n = 14 (2.35%)
Leucine (Leu, L)
n = 87 (14.6%)
Isoleucine (Ile, I)
n = 59 (9.9%)
Methionine (Met, M)
n = 44 (7.38%)
Proline (Pro, P)
n = 28 (4.7%)
Phenylalanine (Phe, F)
n = 35 (5.87%)
Tyrosine (Tyr, Y)
n = 13 (2.18%)
Tryptophan (Trp, W)
n = 11 (1.85%)
Aspartic acid (Asp, D)
n = 7 (1.17%)
Glutamic acid (Glu, E)
n = 12 (2.01%)
Asparagine (Asn, N)
n = 33 (5.54%)
Glutamine (Gln, Q)
n = 16 (2.68%)
Histidine (His, H)
n = 17 (2.85%)
Lysine (Lys, K)
n = 23 (3.86%)
Arginine (Arg, R)
n = 9 (1.51%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
24 35 37 8 12 38 4 22 16 0 2 2 10 0 11 24
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 2 3 7 18 19 0 2 13 12 1 3 3 21 1 12
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
25 27 0 5 15 18 0 1 8 3 10 1 3 7 26 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 12 0 1 6 21 2 2 1 4 2 0 0 1 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
105 132 232 128
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
62 174 122 239
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
21 214 268 94
ND6 (size: 525 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 22 (12.64%)
Alanine (Ala, A)
n = 13 (7.47%)
Serine (Ser, S)
n = 19 (10.92%)
Threonine (Thr, T)
n = 2 (1.15%)
Cysteine (Cys, C)
n = 5 (2.87%)
Valine (Val, V)
n = 21 (12.07%)
Leucine (Leu, L)
n = 24 (13.79%)
Isoleucine (Ile, I)
n = 8 (4.6%)
Methionine (Met, M)
n = 11 (6.32%)
Proline (Pro, P)
n = 3 (1.72%)
Phenylalanine (Phe, F)
n = 16 (9.2%)
Tyrosine (Tyr, Y)
n = 9 (5.17%)
Tryptophan (Trp, W)
n = 7 (4.02%)
Aspartic acid (Asp, D)
n = 6 (3.45%)
Glutamic acid (Glu, E)
n = 3 (1.72%)
Asparagine (Asn, N)
n = 2 (1.15%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 3 (1.72%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 0 1 3 0 3 1 8 0 0 13 0 2 6 15 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
10 5 0 5 1 0 7 7 0 4 11 3 0 0 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 0 1 9 0 2 0 8 0 8 1 5 9 2 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 2 1 6 0 0 0 3 0 0 0 0 1 0 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
65 13 32 65
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
46 29 20 80
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
52 3 24 96
Total protein-coding genes (size: 11367 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 217 (5.73%)
Alanine (Ala, A)
n = 260 (6.87%)
Serine (Ser, S)
n = 284 (7.5%)
Threonine (Thr, T)
n = 346 (9.14%)
Cysteine (Cys, C)
n = 29 (0.77%)
Valine (Val, V)
n = 160 (4.22%)
Leucine (Leu, L)
n = 597 (15.76%)
Isoleucine (Ile, I)
n = 316 (8.34%)
Methionine (Met, M)
n = 238 (6.28%)
Proline (Pro, P)
n = 207 (5.47%)
Phenylalanine (Phe, F)
n = 220 (5.81%)
Tyrosine (Tyr, Y)
n = 121 (3.2%)
Tryptophan (Trp, W)
n = 112 (2.96%)
Aspartic acid (Asp, D)
n = 65 (1.72%)
Glutamic acid (Glu, E)
n = 92 (2.43%)
Asparagine (Asn, N)
n = 145 (3.83%)
Glutamine (Gln, Q)
n = 101 (2.67%)
Histidine (His, H)
n = 105 (2.77%)
Lysine (Lys, K)
n = 91 (2.4%)
Arginine (Arg, R)
n = 72 (1.9%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
135 181 194 60 69 283 42 125 96 5 40 20 86 14 87 133
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
44 14 15 58 99 88 15 27 62 92 36 20 32 143 12 70
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
125 143 8 47 63 120 6 12 36 44 77 13 18 41 104 41
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
64 86 6 26 39 84 7 8 14 45 5 0 2 5 3 99
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
794 939 1186 869
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
480 1049 728 1531
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
236 1133 1689 730 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​M​a​n​o​u​r​i​a​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ e​m​y​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.