Viewing data for Mesocricetus auratus


Scientific name Mesocricetus auratus
Common name Golden hamster
Maximum lifespan 3.90 years (Mesocricetus auratus@AnAge)

Total mtDNA (size: 16264 bases) GC AT G C A T
Base content (bases) 5903 10361 3777 2126 5054 5307
Base content per 1 kb (bases) 363 637 232 131 311 326
Base content (%) 36.3% 63.7%
Total protein-coding genes (size: 11328 bases) GC AT G C A T
Base content (bases) 4067 7261 2745 1322 3652 3609
Base content per 1 kb (bases) 359 641 242 117 322 319
Base content (%) 35.9% 64.1%
D-loop (size: 867 bases) GC AT G C A T
Base content (bases) 341 526 222 119 279 247
Base content per 1 kb (bases) 393 607 256 137 322 285
Base content (%) 39.3% 60.7%
Total tRNA-coding genes (size: 1498 bases) GC AT G C A T
Base content (bases) 530 968 293 237 455 513
Base content per 1 kb (bases) 354 646 196 158 304 342
Base content (%) 35.4% 64.6%
Total rRNA-coding genes (size: 2517 bases) GC AT G C A T
Base content (bases) 942 1575 505 437 656 919
Base content per 1 kb (bases) 374 626 201 174 261 365
Base content (%) 37.4% 62.6%
12S rRNA gene (size: 955 bases) GC AT G C A T
Base content (bases) 366 589 199 167 249 340
Base content per 1 kb (bases) 383 617 208 175 261 356
Base content (%) 38.3% 61.7%
16S rRNA gene (size: 1562 bases) GC AT G C A T
Base content (bases) 576 986 306 270 407 579
Base content per 1 kb (bases) 369 631 196 173 261 371
Base content (%) 36.9% 63.1%

ATP6 (size: 681 bases) GC AT G C A T
Base content (bases) 243 438 173 70 218 220
Base content per 1 kb (bases) 357 643 254 103 320 323
Base content (%) 35.7% 64.3%
ATP8 (size: 204 bases) GC AT G C A T
Base content (bases) 63 141 51 12 63 78
Base content per 1 kb (bases) 309 691 250 59 309 382
Base content (%) 30.9% 69.1%
COX1 (size: 1545 bases) GC AT G C A T
Base content (bases) 587 958 331 256 514 444
Base content per 1 kb (bases) 380 620 214 166 333 287
Base content (%) 38.0% 62.0%
COX2 (size: 684 bases) GC AT G C A T
Base content (bases) 242 442 144 98 215 227
Base content per 1 kb (bases) 354 646 211 143 314 332
Base content (%) 35.4% 64.6%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 310 474 194 116 258 216
Base content per 1 kb (bases) 395 605 247 148 329 276
Base content (%) 39.5% 60.5%
CYTB (size: 1141 bases) GC AT G C A T
Base content (bases) 417 724 272 145 382 342
Base content per 1 kb (bases) 365 635 238 127 335 300
Base content (%) 36.5% 63.5%
ND1 (size: 955 bases) GC AT G C A T
Base content (bases) 345 610 243 102 315 295
Base content per 1 kb (bases) 361 639 254 107 330 309
Base content (%) 36.1% 63.9%
ND2 (size: 1033 bases) GC AT G C A T
Base content (bases) 375 658 293 82 316 342
Base content per 1 kb (bases) 363 637 284 79 306 331
Base content (%) 36.3% 63.7%
ND3 (size: 348 bases) GC AT G C A T
Base content (bases) 122 226 82 40 121 105
Base content per 1 kb (bases) 351 649 236 115 348 302
Base content (%) 35.1% 64.9%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 457 921 315 142 452 469
Base content per 1 kb (bases) 332 668 229 103 328 340
Base content (%) 33.2% 66.8%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 99 198 67 32 104 94
Base content per 1 kb (bases) 333 667 226 108 350 316
Base content (%) 33.3% 66.7%
ND5 (size: 1821 bases) GC AT G C A T
Base content (bases) 647 1174 456 191 580 594
Base content per 1 kb (bases) 355 645 250 105 319 326
Base content (%) 35.5% 64.5%
ND6 (size: 525 bases) GC AT G C A T
Base content (bases) 183 342 140 43 136 206
Base content per 1 kb (bases) 349 651 267 82 259 392
Base content (%) 34.9% 65.1%

ATP6 (size: 681 bases)
Amino acid sequence: MNENLFASFITPTMMGLPVVIIIIMLPSMMLTSSNRLLSNRFHTFQQWVVKMITKQMMSIHSPKGQTWCLMLVSLIIFIGSTNLLGLLPH View full
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.87%)
Alanine (Ala, A)
n = 13 (5.75%)
Serine (Ser, S)
n = 15 (6.64%)
Threonine (Thr, T)
n = 24 (10.62%)
Cysteine (Cys, C)
n = 1 (0.44%)
Valine (Val, V)
n = 12 (5.31%)
Leucine (Leu, L)
n = 38 (16.81%)
Isoleucine (Ile, I)
n = 26 (11.5%)
Methionine (Met, M)
n = 17 (7.52%)
Proline (Pro, P)
n = 14 (6.19%)
Phenylalanine (Phe, F)
n = 13 (5.75%)
Tyrosine (Tyr, Y)
n = 2 (0.88%)
Tryptophan (Trp, W)
n = 3 (1.33%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 3 (1.33%)
Asparagine (Asn, N)
n = 8 (3.54%)
Glutamine (Gln, Q)
n = 8 (3.54%)
Histidine (His, H)
n = 8 (3.54%)
Lysine (Lys, K)
n = 5 (2.21%)
Arginine (Arg, R)
n = 4 (1.77%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
21 5 16 5 7 18 0 8 7 1 7 0 4 1 7 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 1 2 5 6 0 1 2 7 1 6 2 5 1 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 12 0 4 2 3 1 1 4 2 0 0 0 4 4 7
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 3 0 1 0 5 0 1 2 1 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
40 64 85 38
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
24 61 36 106
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
6 48 99 74
ATP8 (size: 204 bases)
Amino acid sequence: MPQLDTSTWFTTVLTSTITLFILIQLKISLQNFPNKPSNKYLKTLKLSNPWELKWTKIFSPLSLPLQ*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 0 (0%)
Serine (Ser, S)
n = 7 (10.45%)
Threonine (Thr, T)
n = 9 (13.43%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 1 (1.49%)
Leucine (Leu, L)
n = 13 (19.4%)
Isoleucine (Ile, I)
n = 5 (7.46%)
Methionine (Met, M)
n = 1 (1.49%)
Proline (Pro, P)
n = 6 (8.96%)
Phenylalanine (Phe, F)
n = 4 (5.97%)
Tyrosine (Tyr, Y)
n = 1 (1.49%)
Tryptophan (Trp, W)
n = 3 (4.48%)
Aspartic acid (Asp, D)
n = 1 (1.49%)
Glutamic acid (Glu, E)
n = 1 (1.49%)
Asparagine (Asn, N)
n = 4 (5.97%)
Glutamine (Gln, Q)
n = 4 (5.97%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 7 (10.45%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 3 0 3 0 7 0 3 2 2 1 0 0 0 3 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 0 0 0 0 0 0 0 0 2 2 2 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 4 1 3 0 2 1 1 0 1 0 0 0 1 3 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 1 0 1 0 7 0 0 0 0 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
3 20 27 18
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
4 21 19 24
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
5 10 32 21
COX1 (size: 1545 bases)
Amino acid sequence: MFINRWLFSTNHKDIGTLYLMFGAWAGMVGTALSILIRAELGQPGALLGDDQIYNVVVTAHAFVMIFFMVMPMMIGGFGNWLVPLMIGAP View full
Amino acid frequencies:
Glycine (Gly, G)
n = 46 (8.95%)
Alanine (Ala, A)
n = 42 (8.17%)
Serine (Ser, S)
n = 31 (6.03%)
Threonine (Thr, T)
n = 36 (7.0%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 40 (7.78%)
Leucine (Leu, L)
n = 58 (11.28%)
Isoleucine (Ile, I)
n = 37 (7.2%)
Methionine (Met, M)
n = 32 (6.23%)
Proline (Pro, P)
n = 28 (5.45%)
Phenylalanine (Phe, F)
n = 43 (8.37%)
Tyrosine (Tyr, Y)
n = 19 (3.7%)
Tryptophan (Trp, W)
n = 17 (3.31%)
Aspartic acid (Asp, D)
n = 17 (3.31%)
Glutamic acid (Glu, E)
n = 9 (1.75%)
Asparagine (Asn, N)
n = 16 (3.11%)
Glutamine (Gln, Q)
n = 6 (1.17%)
Histidine (His, H)
n = 18 (3.5%)
Lysine (Lys, K)
n = 10 (1.95%)
Arginine (Arg, R)
n = 8 (1.56%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
23 14 28 13 2 21 2 19 5 1 13 5 19 3 24 19
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 0 17 10 14 1 9 6 24 7 10 7 10 1 14
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 19 2 6 4 18 0 1 2 12 7 1 1 7 9 12
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 7 2 12 5 8 2 1 2 5 0 0 0 1 0 16
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
154 98 134 129
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
75 134 96 210
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
27 99 214 175
COX2 (size: 684 bases)
Amino acid sequence: MAYPSQLGLQDATSPIMEELMNFHDHTLMIVFLISSLVLYVITLMLTTKLTHTSTMDAQEVETIWTILPAVILILIALPSLRILYMMDEI View full
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 8 (3.52%)
Serine (Ser, S)
n = 19 (8.37%)
Threonine (Thr, T)
n = 17 (7.49%)
Cysteine (Cys, C)
n = 3 (1.32%)
Valine (Val, V)
n = 16 (7.05%)
Leucine (Leu, L)
n = 33 (14.54%)
Isoleucine (Ile, I)
n = 18 (7.93%)
Methionine (Met, M)
n = 14 (6.17%)
Proline (Pro, P)
n = 14 (6.17%)
Phenylalanine (Phe, F)
n = 6 (2.64%)
Tyrosine (Tyr, Y)
n = 10 (4.41%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 11 (4.85%)
Glutamic acid (Glu, E)
n = 14 (6.17%)
Asparagine (Asn, N)
n = 8 (3.52%)
Glutamine (Gln, Q)
n = 6 (2.64%)
Histidine (His, H)
n = 6 (2.64%)
Lysine (Lys, K)
n = 5 (2.2%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 6 12 7 1 10 1 13 4 2 5 5 5 1 4 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 2 1 3 2 3 0 1 1 4 2 6 2 4 2 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 10 1 5 2 8 0 3 1 7 3 0 1 4 4 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 12 2 5 6 4 1 0 1 5 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
57 51 66 54
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
26 54 61 87
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 39 100 74
COX3 (size: 784 bases)
Amino acid sequence: MTHQTHAYHMVNPSPWPLTGALSALLLTSGLAMWFHYNTLTLLYLGLLTNMLTMYQWWRDIVREGTYQGHHTPIVQKGLRYGMILFIVSE View full
Amino acid frequencies:
Glycine (Gly, G)
n = 22 (8.46%)
Alanine (Ala, A)
n = 15 (5.77%)
Serine (Ser, S)
n = 19 (7.31%)
Threonine (Thr, T)
n = 21 (8.08%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 16 (6.15%)
Leucine (Leu, L)
n = 36 (13.85%)
Isoleucine (Ile, I)
n = 14 (5.38%)
Methionine (Met, M)
n = 10 (3.85%)
Proline (Pro, P)
n = 10 (3.85%)
Phenylalanine (Phe, F)
n = 19 (7.31%)
Tyrosine (Tyr, Y)
n = 14 (5.38%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 4 (1.54%)
Glutamic acid (Glu, E)
n = 7 (2.69%)
Asparagine (Asn, N)
n = 8 (3.08%)
Glutamine (Gln, Q)
n = 7 (2.69%)
Histidine (His, H)
n = 16 (6.15%)
Lysine (Lys, K)
n = 4 (1.54%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 5 8 16 6 5 0 9 7 0 4 5 6 1 11 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 2 5 3 6 1 5 9 7 1 2 3 5 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 12 0 6 2 7 1 0 3 9 5 1 0 5 3 8
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 6 1 3 1 4 0 2 0 3 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
64 65 60 72
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 62 60 95
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
8 67 96 90
CYTB (size: 1141 bases)
Amino acid sequence: MTNIRKKHPLMKIINHSFIDLPTPSNISSWWNFGSLIGLCLIIQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWLIRYLHANGASMF View full
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (6.33%)
Alanine (Ala, A)
n = 28 (7.39%)
Serine (Ser, S)
n = 22 (5.8%)
Threonine (Thr, T)
n = 26 (6.86%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 22 (5.8%)
Leucine (Leu, L)
n = 54 (14.25%)
Isoleucine (Ile, I)
n = 44 (11.61%)
Methionine (Met, M)
n = 12 (3.17%)
Proline (Pro, P)
n = 21 (5.54%)
Phenylalanine (Phe, F)
n = 28 (7.39%)
Tyrosine (Tyr, Y)
n = 16 (4.22%)
Tryptophan (Trp, W)
n = 11 (2.9%)
Aspartic acid (Asp, D)
n = 12 (3.17%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 15 (3.96%)
Glutamine (Gln, Q)
n = 5 (1.32%)
Histidine (His, H)
n = 13 (3.43%)
Lysine (Lys, K)
n = 10 (2.64%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
27 17 11 12 5 26 0 9 5 0 7 5 10 0 12 16
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 2 12 5 11 0 4 9 10 1 6 2 13 0 13
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 13 0 3 2 15 0 0 2 11 5 0 2 8 7 9
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 6 0 7 5 10 0 0 1 6 1 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
92 90 109 89
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
48 95 77 160
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
5 87 156 132
ND1 (size: 955 bases)
Amino acid sequence: VHLINILMLLIPILIAMAFLTLVERKILGYMQLRKGPNIVGPYGILQPFADAMKLFIKEPLRPLATSTSLFIIAPTLSLMLAFSLWIPLP View full
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.79%)
Alanine (Ala, A)
n = 24 (7.57%)
Serine (Ser, S)
n = 26 (8.2%)
Threonine (Thr, T)
n = 21 (6.62%)
Cysteine (Cys, C)
n = 1 (0.32%)
Valine (Val, V)
n = 10 (3.15%)
Leucine (Leu, L)
n = 55 (17.35%)
Isoleucine (Ile, I)
n = 32 (10.09%)
Methionine (Met, M)
n = 21 (6.62%)
Proline (Pro, P)
n = 21 (6.62%)
Phenylalanine (Phe, F)
n = 21 (6.62%)
Tyrosine (Tyr, Y)
n = 12 (3.79%)
Tryptophan (Trp, W)
n = 9 (2.84%)
Aspartic acid (Asp, D)
n = 4 (1.26%)
Glutamic acid (Glu, E)
n = 10 (3.15%)
Asparagine (Asn, N)
n = 11 (3.47%)
Glutamine (Gln, Q)
n = 6 (1.89%)
Histidine (His, H)
n = 7 (2.21%)
Lysine (Lys, K)
n = 7 (2.21%)
Arginine (Arg, R)
n = 8 (2.52%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
16 16 21 8 4 23 1 18 6 0 3 1 5 1 15 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
0 1 0 6 8 10 0 1 6 4 1 7 6 8 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 10 0 5 7 10 0 1 3 8 4 1 1 8 3 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 7 3 2 2 7 0 2 1 5 0 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
60 78 96 84
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
34 88 57 139
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
8 77 142 91
ND2 (size: 1033 bases)
Amino acid sequence: INPITLLIIYFTILSGPMVTMLSNNFFLMWIGLEMNLLAIIPVMTNKSNPRTTEAATKYFITQATASMIFLLSIIMNYKQLGTWTIQPQT View full
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (3.79%)
Alanine (Ala, A)
n = 18 (5.25%)
Serine (Ser, S)
n = 33 (9.62%)
Threonine (Thr, T)
n = 33 (9.62%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 7 (2.04%)
Leucine (Leu, L)
n = 62 (18.08%)
Isoleucine (Ile, I)
n = 40 (11.66%)
Methionine (Met, M)
n = 21 (6.12%)
Proline (Pro, P)
n = 23 (6.71%)
Phenylalanine (Phe, F)
n = 16 (4.66%)
Tyrosine (Tyr, Y)
n = 10 (2.92%)
Tryptophan (Trp, W)
n = 8 (2.33%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 5 (1.46%)
Asparagine (Asn, N)
n = 20 (5.83%)
Glutamine (Gln, Q)
n = 11 (3.21%)
Histidine (His, H)
n = 6 (1.75%)
Lysine (Lys, K)
n = 14 (4.08%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
24 16 19 13 9 29 1 9 10 1 1 3 3 0 8 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 1 8 5 5 0 2 5 5 1 8 7 8 0 13
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 14 1 6 8 13 1 1 4 6 4 0 1 5 15 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 5 0 0 0 13 1 0 1 2 0 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
43 95 133 73
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
30 102 66 146
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
9 96 143 96
ND3 (size: 1033 bases)
Amino acid sequence: INPITLLIIYFTILSGPMVTMLSNNFFLMWIGLEMNLLAIIPVMTNKSNPRTTEAATKYFITQATASMIFLLSIIMNYKQLGTWTIQPQT View full
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (3.79%)
Alanine (Ala, A)
n = 18 (5.25%)
Serine (Ser, S)
n = 33 (9.62%)
Threonine (Thr, T)
n = 33 (9.62%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 7 (2.04%)
Leucine (Leu, L)
n = 62 (18.08%)
Isoleucine (Ile, I)
n = 40 (11.66%)
Methionine (Met, M)
n = 21 (6.12%)
Proline (Pro, P)
n = 23 (6.71%)
Phenylalanine (Phe, F)
n = 16 (4.66%)
Tyrosine (Tyr, Y)
n = 10 (2.92%)
Tryptophan (Trp, W)
n = 8 (2.33%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 5 (1.46%)
Asparagine (Asn, N)
n = 20 (5.83%)
Glutamine (Gln, Q)
n = 11 (3.21%)
Histidine (His, H)
n = 6 (1.75%)
Lysine (Lys, K)
n = 14 (4.08%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
24 16 19 13 9 29 1 9 10 1 1 3 3 0 8 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 1 8 5 5 0 2 5 5 1 8 7 8 0 13
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 14 1 6 8 13 1 1 4 6 4 0 1 5 15 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 5 0 0 0 13 1 0 1 2 0 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
43 95 133 73
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
30 102 66 146
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
9 96 143 96
ND4 (size: 1378 bases)
Amino acid sequence: MLKIIVPSLMLLPLTWFSSSKKVWINVTAYSFLINIIAMTTLWQNSDGTLNFSSMFSMDSLSSPLTALTIWLLPLMLLASQKHIKKETVL View full
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (4.15%)
Alanine (Ala, A)
n = 30 (6.55%)
Serine (Ser, S)
n = 42 (9.17%)
Threonine (Thr, T)
n = 38 (8.3%)
Cysteine (Cys, C)
n = 3 (0.66%)
Valine (Val, V)
n = 11 (2.4%)
Leucine (Leu, L)
n = 91 (19.87%)
Isoleucine (Ile, I)
n = 52 (11.35%)
Methionine (Met, M)
n = 33 (7.21%)
Proline (Pro, P)
n = 19 (4.15%)
Phenylalanine (Phe, F)
n = 17 (3.71%)
Tyrosine (Tyr, Y)
n = 14 (3.06%)
Tryptophan (Trp, W)
n = 12 (2.62%)
Aspartic acid (Asp, D)
n = 5 (1.09%)
Glutamic acid (Glu, E)
n = 9 (1.97%)
Asparagine (Asn, N)
n = 21 (4.59%)
Glutamine (Gln, Q)
n = 10 (2.18%)
Histidine (His, H)
n = 9 (1.97%)
Lysine (Lys, K)
n = 15 (3.28%)
Arginine (Arg, R)
n = 9 (1.97%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
33 19 29 20 5 36 3 25 10 0 2 0 8 1 11 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 2 12 5 13 0 6 1 12 0 10 6 3 0 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 24 0 6 9 17 0 8 2 7 7 1 2 8 13 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 7 2 3 2 13 2 0 0 9 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
74 111 169 105
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
53 119 83 204
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 85 217 142
ND4L (size: 297 bases)
Amino acid sequence: MTTTLFNITLAFVFSLIGTLMFRSHLMSTLLCLEGMMLTLFIMLTITSLNIHSMITYPIPIVILVFAACEAAVGLALLVKVSSTYGMDYV View full
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 6 (6.12%)
Serine (Ser, S)
n = 7 (7.14%)
Threonine (Thr, T)
n = 11 (11.22%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 7 (7.14%)
Leucine (Leu, L)
n = 19 (19.39%)
Isoleucine (Ile, I)
n = 9 (9.18%)
Methionine (Met, M)
n = 8 (8.16%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 6 (6.12%)
Tyrosine (Tyr, Y)
n = 3 (3.06%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 4 (4.08%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 2 (2.04%)
Lysine (Lys, K)
n = 1 (1.02%)
Arginine (Arg, R)
n = 1 (1.02%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 5 6 3 3 6 0 7 2 0 3 0 4 0 5 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 3 0 1 4 1 0 0 4 0 2 0 0 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 5 0 2 1 4 0 0 0 3 0 0 0 2 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 1 1 0 1 1 0 0 1 0 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
20 19 33 27
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
8 26 16 49
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
4 22 45 28
ND5 (size: 1821 bases)
Amino acid sequence: INPITSVIILIFVALMLPIMLSSTNIYKTYSFSNHATSMIKYSFMLSLIPLCTLFYSNTELLITSWHWVTINTIKLSINLKFDFFCIIFL View full
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (4.29%)
Alanine (Ala, A)
n = 38 (6.27%)
Serine (Ser, S)
n = 54 (8.91%)
Threonine (Thr, T)
n = 54 (8.91%)
Cysteine (Cys, C)
n = 8 (1.32%)
Valine (Val, V)
n = 16 (2.64%)
Leucine (Leu, L)
n = 97 (16.01%)
Isoleucine (Ile, I)
n = 63 (10.4%)
Methionine (Met, M)
n = 37 (6.11%)
Proline (Pro, P)
n = 24 (3.96%)
Phenylalanine (Phe, F)
n = 43 (7.1%)
Tyrosine (Tyr, Y)
n = 19 (3.14%)
Tryptophan (Trp, W)
n = 13 (2.15%)
Aspartic acid (Asp, D)
n = 9 (1.49%)
Glutamic acid (Glu, E)
n = 11 (1.82%)
Asparagine (Asn, N)
n = 40 (6.6%)
Glutamine (Gln, Q)
n = 12 (1.98%)
Histidine (His, H)
n = 11 (1.82%)
Lysine (Lys, K)
n = 22 (3.63%)
Arginine (Arg, R)
n = 9 (1.49%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
36 27 32 20 8 42 4 23 11 1 3 3 7 3 23 20
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 5 3 16 12 10 0 5 7 11 3 4 10 9 1 14
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 29 1 11 10 20 1 4 8 11 8 1 0 16 24 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 10 1 3 6 20 2 1 4 4 0 0 0 1 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
100 130 228 149
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
68 158 125 256
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
23 168 241 175
ND6 (size: 525 bases)
Amino acid sequence: MMESILILSSFIALGCLGTSLKPSPIYGGMCLIISGCAGCLAVMGLGGSFLGLMVFLIYLGGMMVVFGYTTAMSAEEYPETWVSSWLMFG View full
Amino acid frequencies:
Glycine (Gly, G)
n = 27 (15.52%)
Alanine (Ala, A)
n = 9 (5.17%)
Serine (Ser, S)
n = 15 (8.62%)
Threonine (Thr, T)
n = 8 (4.6%)
Cysteine (Cys, C)
n = 5 (2.87%)
Valine (Val, V)
n = 16 (9.2%)
Leucine (Leu, L)
n = 21 (12.07%)
Isoleucine (Ile, I)
n = 13 (7.47%)
Methionine (Met, M)
n = 16 (9.2%)
Proline (Pro, P)
n = 3 (1.72%)
Phenylalanine (Phe, F)
n = 10 (5.75%)
Tyrosine (Tyr, Y)
n = 8 (4.6%)
Tryptophan (Trp, W)
n = 5 (2.87%)
Aspartic acid (Asp, D)
n = 3 (1.72%)
Glutamic acid (Glu, E)
n = 9 (5.17%)
Asparagine (Asn, N)
n = 4 (2.3%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 1 (0.57%)
Arginine (Arg, R)
n = 1 (0.57%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 1 10 1 1 0 0 15 0 0 3 1 11 1 10 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 4 1 5 0 3 1 8 1 8 10 3 0 0 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 3 1 4 0 4 1 6 0 6 2 2 4 3 1 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 4 5 3 0 0 1 1 0 0 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
64 6 48 57
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 29 26 76
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
32 8 62 73
Total protein-coding genes (size: 11396 bases)
Amino acid sequence: VHLINILMLLIPILIAMAFLTLVERKILGYMQLRKGPNIVGPYGILQPFADAMKLFIKEPLRPLATSTSLFIIAPTLSLMLAFSLWIPLP View full
Amino acid frequencies:
Glycine (Gly, G)
n = 215 (5.66%)
Alanine (Ala, A)
n = 241 (6.35%)
Serine (Ser, S)
n = 299 (7.88%)
Threonine (Thr, T)
n = 304 (8.01%)
Cysteine (Cys, C)
n = 32 (0.84%)
Valine (Val, V)
n = 178 (4.69%)
Leucine (Leu, L)
n = 601 (15.83%)
Isoleucine (Ile, I)
n = 363 (9.56%)
Methionine (Met, M)
n = 228 (6.01%)
Proline (Pro, P)
n = 191 (5.03%)
Phenylalanine (Phe, F)
n = 234 (6.16%)
Tyrosine (Tyr, Y)
n = 131 (3.45%)
Tryptophan (Trp, W)
n = 102 (2.69%)
Aspartic acid (Asp, D)
n = 70 (1.84%)
Glutamic acid (Glu, E)
n = 92 (2.42%)
Asparagine (Asn, N)
n = 163 (4.29%)
Glutamine (Gln, Q)
n = 80 (2.11%)
Histidine (His, H)
n = 96 (2.53%)
Lysine (Lys, K)
n = 106 (2.79%)
Arginine (Arg, R)
n = 63 (1.66%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
226 137 198 127 56 230 12 164 72 8 54 28 84 12 139 95
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
30 16 16 89 59 88 5 43 49 96 27 68 51 67 5 97
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
41 159 7 65 47 124 6 27 30 86 45 9 12 72 91 53
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
43 75 17 40 30 97 9 8 13 41 1 0 0 7 1 93
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
796 855 1221 925
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
469 978 746 1604
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
161 831 1595 1210 

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Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.