Viewing data for Thunnus maccoyii
| Scientific name | Thunnus maccoyii |
| Common name | Southern bluefin tuna |
| Maximum lifespan | 20.00 years (Thunnus maccoyii@AnAge) |
| Total mtDNA (size: 16527 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 7602 | 8833 | 4848 | 2754 | 4162 | 4671 |
| Base content per 1 kb (bases) | 460 | 534 | 293 | 167 | 252 | 283 |
| Base content (%) | 46.0% | 53.4% | ||||
| Total protein-coding genes (size: 11407 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 5309 | 6045 | 3568 | 1741 | 2973 | 3072 |
| Base content per 1 kb (bases) | 465 | 530 | 313 | 153 | 261 | 269 |
| Base content (%) | 46.5% | 53.0% | ||||
| D-loop (size: 865 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 319 | 513 | 190 | 129 | 245 | 268 |
| Base content per 1 kb (bases) | 369 | 593 | 220 | 149 | 283 | 310 |
| Base content (%) | 36.9% | 59.3% | ||||
| Total tRNA-coding genes (size: 1551 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 706 | 844 | 387 | 319 | 383 | 461 |
| Base content per 1 kb (bases) | 455 | 544 | 250 | 206 | 247 | 297 |
| Base content (%) | 45.5% | 54.4% | ||||
| Total rRNA-coding genes (size: 3639 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 1717 | 1913 | 1002 | 715 | 809 | 1104 |
| Base content per 1 kb (bases) | 472 | 526 | 275 | 196 | 222 | 303 |
| Base content (%) | 47.2% | 52.6% | ||||
| 12S rRNA gene (size: 947 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 463 | 481 | 252 | 211 | 198 | 283 |
| Base content per 1 kb (bases) | 489 | 508 | 266 | 223 | 209 | 299 |
| Base content (%) | 48.9% | 50.8% | ||||
| 16S rRNA gene (size: 2692 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 1254 | 1432 | 750 | 504 | 611 | 821 |
| Base content per 1 kb (bases) | 466 | 532 | 279 | 187 | 227 | 305 |
| Base content (%) | 46.6% | 53.2% | ||||
| ATP6 (size: 684 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 297 | 378 | 210 | 87 | 190 | 188 |
| Base content per 1 kb (bases) | 434 | 553 | 307 | 127 | 278 | 275 |
| Base content (%) | 43.4% | 55.3% | ||||
| ATP8 (size: 168 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 76 | 92 | 56 | 20 | 36 | 56 |
| Base content per 1 kb (bases) | 452 | 548 | 333 | 119 | 214 | 333 |
| Base content (%) | 45.2% | 54.8% | ||||
| COX1 (size: 1551 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 706 | 831 | 421 | 285 | 438 | 393 |
| Base content per 1 kb (bases) | 455 | 536 | 271 | 184 | 282 | 253 |
| Base content (%) | 45.5% | 53.6% | ||||
| COX2 (size: 691 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 308 | 381 | 194 | 114 | 186 | 195 |
| Base content per 1 kb (bases) | 446 | 551 | 281 | 165 | 269 | 282 |
| Base content (%) | 44.6% | 55.1% | ||||
| COX3 (size: 785 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 363 | 419 | 235 | 128 | 209 | 210 |
| Base content per 1 kb (bases) | 462 | 534 | 299 | 163 | 266 | 268 |
| Base content (%) | 46.2% | 53.4% | ||||
| CYTB (size: 1141 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 524 | 605 | 354 | 170 | 325 | 280 |
| Base content per 1 kb (bases) | 459 | 530 | 310 | 149 | 285 | 245 |
| Base content (%) | 45.9% | 53.0% | ||||
| ND1 (size: 975 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 465 | 506 | 317 | 148 | 256 | 250 |
| Base content per 1 kb (bases) | 477 | 519 | 325 | 152 | 263 | 256 |
| Base content (%) | 47.7% | 51.9% | ||||
| ND2 (size: 1046 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 525 | 521 | 377 | 148 | 245 | 276 |
| Base content per 1 kb (bases) | 502 | 498 | 360 | 141 | 234 | 264 |
| Base content (%) | 50.2% | 49.8% | ||||
| ND3 (size: 349 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 179 | 170 | 123 | 56 | 88 | 82 |
| Base content per 1 kb (bases) | 513 | 487 | 352 | 160 | 252 | 235 |
| Base content (%) | 51.3% | 48.7% | ||||
| ND4 (size: 1381 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 651 | 729 | 439 | 212 | 354 | 375 |
| Base content per 1 kb (bases) | 471 | 528 | 318 | 154 | 256 | 272 |
| Base content (%) | 47.1% | 52.8% | ||||
| ND4L (size: 297 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 142 | 152 | 98 | 44 | 85 | 67 |
| Base content per 1 kb (bases) | 478 | 512 | 330 | 148 | 286 | 226 |
| Base content (%) | 47.8% | 51.2% | ||||
| ND5 (size: 1839 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 846 | 988 | 584 | 262 | 474 | 514 |
| Base content per 1 kb (bases) | 460 | 537 | 318 | 142 | 258 | 279 |
| Base content (%) | 46.0% | 53.7% | ||||
| ND6 (size: 522 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 233 | 289 | 164 | 69 | 92 | 197 |
| Base content per 1 kb (bases) | 446 | 554 | 314 | 132 | 176 | 377 |
| Base content (%) | 44.6% | 55.4% | ||||
| ATP6 (size: 684 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
Amino acid frequencies:
Glycine (Gly, G)
n = 10 (4.41%) 
Alanine (Ala, A)
n = 18 (7.93%) 
Serine (Ser, S)
n = 8 (3.52%) 
Threonine (Thr, T)
n = 23 (10.13%) 
Cysteine (Cys, C)
n = 0 (0%) 
Valine (Val, V)
n = 15 (6.61%) 
Leucine (Leu, L)
n = 55 (24.23%) 
Isoleucine (Ile, I)
n = 13 (5.73%) 
Methionine (Met, M)
n = 10 (4.41%) 
Proline (Pro, P)
n = 17 (7.49%) 
Phenylalanine (Phe, F)
n = 14 (6.17%) 
Tyrosine (Tyr, Y)
n = 3 (1.32%) 
Tryptophan (Trp, W)
n = 5 (2.2%) 
Aspartic acid (Asp, D)
n = 0 (0%) 
Glutamic acid (Glu, E)
n = 6 (2.64%) 
Asparagine (Asn, N)
n = 9 (3.96%) 
Glutamine (Gln, Q)
n = 7 (3.08%) 
Histidine (His, H)
n = 3 (1.32%) 
Lysine (Lys, K)
n = 1 (0.44%) 
Arginine (Arg, R)
n = 6 (2.64%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 6 | 7 | 4 | 12 | 8 | 24 | 1 | 8 | 6 | 1 | 4 | 7 | 2 | 1 | 6 | 8 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 6 | 0 | 0 | 5 | 5 | 8 | 0 | 0 | 4 | 5 | 0 | 5 | 4 | 8 | 0 | 4 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 5 | 12 | 1 | 1 | 3 | 0 | 0 | 0 | 4 | 0 | 3 | 0 | 0 | 2 | 7 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 2 | 6 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 4 | 2 | 0 | 0 | 1 | 0 | 5 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 47 | 78 | 59 | 35 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 24 | 61 | 30 | 104 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 12 | 67 | 94 | 46 | ||||||||||||
| ATP8 (size: 168 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: MPQLNPAPWLAILVFSWLVFLIIIPPKVMAHSFPNEPTPQSTEKPKGEPWNWPWH* | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 1 (1.82%)
Alanine (Ala, A)
n = 3 (5.45%)
Serine (Ser, S)
n = 3 (5.45%)
Threonine (Thr, T)
n = 2 (3.64%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 3 (5.45%)
Leucine (Leu, L)
n = 5 (9.09%)
Isoleucine (Ile, I)
n = 4 (7.27%)
Methionine (Met, M)
n = 2 (3.64%)
Proline (Pro, P)
n = 11 (20.0%)
Phenylalanine (Phe, F)
n = 3 (5.45%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 3 (5.45%)
Asparagine (Asn, N)
n = 3 (5.45%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 2 (3.64%)
Lysine (Lys, K)
n = 3 (5.45%)
Arginine (Arg, R)
n = 0 (0%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 1 | 3 | 1 | 1 | 1 | 2 | 0 | 1 | 2 | 0 | 1 | 1 | 1 | 0 | 0 | 3 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 0 | 0 | 0 | 2 | 1 | 0 | 0 | 0 | 0 | 1 | 3 | 4 | 4 | 0 | 0 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 0 | 2 | 0 | 0 | 0 | 2 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 2 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 2 | 3 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 4 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 10 | 19 | 15 | 12 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 7 | 18 | 14 | 17 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 3 | 19 | 27 | 7 | ||||||||||||
| COX1 (size: 1551 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 46 (8.91%)
Alanine (Ala, A)
n = 49 (9.5%)
Serine (Ser, S)
n = 29 (5.62%)
Threonine (Thr, T)
n = 36 (6.98%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 43 (8.33%)
Leucine (Leu, L)
n = 61 (11.82%)
Isoleucine (Ile, I)
n = 40 (7.75%)
Methionine (Met, M)
n = 24 (4.65%)
Proline (Pro, P)
n = 27 (5.23%)
Phenylalanine (Phe, F)
n = 40 (7.75%)
Tyrosine (Tyr, Y)
n = 17 (3.29%)
Tryptophan (Trp, W)
n = 16 (3.1%)
Aspartic acid (Asp, D)
n = 15 (2.91%)
Glutamic acid (Glu, E)
n = 11 (2.13%)
Asparagine (Asn, N)
n = 13 (2.52%)
Glutamine (Gln, Q)
n = 7 (1.36%)
Histidine (His, H)
n = 18 (3.49%)
Lysine (Lys, K)
n = 8 (1.55%)
Arginine (Arg, R)
n = 8 (1.55%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 24 | 16 | 3 | 22 | 6 | 24 | 3 | 2 | 4 | 3 | 12 | 6 | 23 | 1 | 10 | 30 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 21 | 0 | 1 | 12 | 21 | 16 | 0 | 9 | 7 | 22 | 7 | 9 | 4 | 12 | 1 | 6 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 9 | 18 | 2 | 6 | 7 | 11 | 0 | 0 | 5 | 3 | 14 | 0 | 1 | 4 | 9 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 15 | 9 | 2 | 0 | 15 | 7 | 1 | 1 | 1 | 4 | 2 | 0 | 0 | 1 | 0 | 16 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 162 | 114 | 125 | 102 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 75 | 134 | 90 | 204 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 44 | 166 | 172 | 121 | ||||||||||||
| COX2 (size: 691 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.93%)
Alanine (Ala, A)
n = 18 (7.86%)
Serine (Ser, S)
n = 17 (7.42%)
Threonine (Thr, T)
n = 8 (3.49%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 16 (6.99%)
Leucine (Leu, L)
n = 28 (12.23%)
Isoleucine (Ile, I)
n = 23 (10.04%)
Methionine (Met, M)
n = 10 (4.37%)
Proline (Pro, P)
n = 14 (6.11%)
Phenylalanine (Phe, F)
n = 9 (3.93%)
Tyrosine (Tyr, Y)
n = 9 (3.93%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 14 (6.11%)
Glutamic acid (Glu, E)
n = 14 (6.11%)
Asparagine (Asn, N)
n = 5 (2.18%)
Glutamine (Gln, Q)
n = 8 (3.49%)
Histidine (His, H)
n = 10 (4.37%)
Lysine (Lys, K)
n = 4 (1.75%)
Arginine (Arg, R)
n = 6 (2.62%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 10 | 13 | 6 | 10 | 4 | 10 | 3 | 1 | 4 | 4 | 4 | 7 | 3 | 2 | 6 | 3 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 0 | 2 | 3 | 7 | 7 | 1 | 2 | 1 | 4 | 2 | 6 | 4 | 4 | 0 | 1 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 1 | 6 | 0 | 4 | 3 | 5 | 1 | 0 | 3 | 3 | 6 | 0 | 0 | 0 | 5 | 5 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 5 | 13 | 1 | 4 | 10 | 4 | 0 | 0 | 1 | 5 | 0 | 0 | 0 | 0 | 0 | 5 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 71 | 65 | 53 | 39 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 25 | 53 | 64 | 86 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 18 | 75 | 77 | 58 | ||||||||||||
| COX3 (size: 785 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 21 (8.08%)
Alanine (Ala, A)
n = 23 (8.85%)
Serine (Ser, S)
n = 14 (5.38%)
Threonine (Thr, T)
n = 24 (9.23%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 17 (6.54%)
Leucine (Leu, L)
n = 31 (11.92%)
Isoleucine (Ile, I)
n = 13 (5.0%)
Methionine (Met, M)
n = 8 (3.08%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 23 (8.85%)
Tyrosine (Tyr, Y)
n = 13 (5.0%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 9 (3.46%)
Asparagine (Asn, N)
n = 2 (0.77%)
Glutamine (Gln, Q)
n = 7 (2.69%)
Histidine (His, H)
n = 16 (6.15%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 6 (2.31%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 6 | 7 | 4 | 5 | 5 | 16 | 1 | 4 | 7 | 0 | 5 | 8 | 3 | 1 | 5 | 18 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 0 | 2 | 5 | 10 | 8 | 0 | 4 | 5 | 10 | 1 | 5 | 2 | 4 | 0 | 1 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 7 | 15 | 1 | 6 | 2 | 3 | 0 | 0 | 3 | 3 | 10 | 0 | 0 | 0 | 2 | 6 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 10 | 9 | 0 | 0 | 5 | 2 | 0 | 0 | 1 | 5 | 0 | 0 | 0 | 0 | 0 | 12 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 74 | 67 | 52 | 65 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 43 | 69 | 54 | 92 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 8 | 97 | 102 | 51 | ||||||||||||
| CYTB (size: 1141 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 26 (6.86%)
Alanine (Ala, A)
n = 32 (8.44%)
Serine (Ser, S)
n = 25 (6.6%)
Threonine (Thr, T)
n = 21 (5.54%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 27 (7.12%)
Leucine (Leu, L)
n = 58 (15.3%)
Isoleucine (Ile, I)
n = 28 (7.39%)
Methionine (Met, M)
n = 8 (2.11%)
Proline (Pro, P)
n = 22 (5.8%)
Phenylalanine (Phe, F)
n = 34 (8.97%)
Tyrosine (Tyr, Y)
n = 13 (3.43%)
Tryptophan (Trp, W)
n = 13 (3.43%)
Aspartic acid (Asp, D)
n = 9 (2.37%)
Glutamic acid (Glu, E)
n = 7 (1.85%)
Asparagine (Asn, N)
n = 18 (4.75%)
Glutamine (Gln, Q)
n = 5 (1.32%)
Histidine (His, H)
n = 11 (2.9%)
Lysine (Lys, K)
n = 8 (2.11%)
Arginine (Arg, R)
n = 8 (2.11%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 11 | 17 | 2 | 21 | 11 | 21 | 2 | 1 | 3 | 2 | 8 | 7 | 10 | 1 | 4 | 30 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 6 | 1 | 2 | 4 | 12 | 14 | 0 | 3 | 8 | 12 | 2 | 5 | 4 | 11 | 1 | 6 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 9 | 5 | 0 | 8 | 8 | 8 | 0 | 0 | 1 | 2 | 11 | 0 | 0 | 4 | 14 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 11 | 6 | 1 | 3 | 6 | 8 | 0 | 0 | 0 | 6 | 2 | 0 | 0 | 0 | 0 | 13 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 97 | 100 | 83 | 88 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 50 | 95 | 71 | 152 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 17 | 151 | 120 | 80 | ||||||||||||
| ND1 (size: 975 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.56%)
Alanine (Ala, A)
n = 38 (11.73%)
Serine (Ser, S)
n = 18 (5.56%)
Threonine (Thr, T)
n = 20 (6.17%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 17 (5.25%)
Leucine (Leu, L)
n = 61 (18.83%)
Isoleucine (Ile, I)
n = 27 (8.33%)
Methionine (Met, M)
n = 10 (3.09%)
Proline (Pro, P)
n = 24 (7.41%)
Phenylalanine (Phe, F)
n = 17 (5.25%)
Tyrosine (Tyr, Y)
n = 11 (3.4%)
Tryptophan (Trp, W)
n = 8 (2.47%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.4%)
Asparagine (Asn, N)
n = 12 (3.7%)
Glutamine (Gln, Q)
n = 7 (2.16%)
Histidine (His, H)
n = 4 (1.23%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 17 | 10 | 6 | 10 | 18 | 19 | 8 | 6 | 6 | 1 | 2 | 8 | 6 | 1 | 6 | 11 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 0 | 0 | 6 | 18 | 12 | 1 | 2 | 7 | 5 | 4 | 4 | 10 | 10 | 0 | 2 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 10 | 6 | 1 | 4 | 5 | 7 | 0 | 0 | 2 | 3 | 8 | 0 | 0 | 4 | 8 | 2 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 2 | 9 | 2 | 0 | 4 | 7 | 0 | 0 | 0 | 6 | 2 | 0 | 0 | 1 | 0 | 8 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 87 | 98 | 77 | 59 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 36 | 96 | 57 | 132 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 24 | 121 | 114 | 62 | ||||||||||||
| ND2 (size: 1046 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.19%)
Alanine (Ala, A)
n = 40 (11.53%)
Serine (Ser, S)
n = 23 (6.63%)
Threonine (Thr, T)
n = 42 (12.1%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 11 (3.17%)
Leucine (Leu, L)
n = 76 (21.9%)
Isoleucine (Ile, I)
n = 21 (6.05%)
Methionine (Met, M)
n = 13 (3.75%)
Proline (Pro, P)
n = 22 (6.34%)
Phenylalanine (Phe, F)
n = 12 (3.46%)
Tyrosine (Tyr, Y)
n = 7 (2.02%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 12 (3.46%)
Glutamine (Gln, Q)
n = 13 (3.75%)
Histidine (His, H)
n = 7 (2.02%)
Lysine (Lys, K)
n = 9 (2.59%)
Arginine (Arg, R)
n = 4 (1.15%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 7 | 14 | 6 | 15 | 22 | 25 | 12 | 2 | 11 | 2 | 3 | 2 | 4 | 2 | 3 | 9 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 7 | 0 | 0 | 4 | 23 | 12 | 1 | 5 | 6 | 3 | 4 | 5 | 8 | 8 | 1 | 10 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 18 | 13 | 1 | 1 | 7 | 8 | 2 | 0 | 5 | 1 | 6 | 1 | 0 | 3 | 9 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 4 | 4 | 1 | 1 | 1 | 9 | 0 | 0 | 1 | 3 | 0 | 0 | 0 | 0 | 0 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 76 | 120 | 102 | 50 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 38 | 122 | 55 | 133 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 34 | 135 | 118 | 61 | ||||||||||||
| ND3 (size: 1046 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.19%)
Alanine (Ala, A)
n = 40 (11.53%)
Serine (Ser, S)
n = 23 (6.63%)
Threonine (Thr, T)
n = 42 (12.1%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 11 (3.17%)
Leucine (Leu, L)
n = 76 (21.9%)
Isoleucine (Ile, I)
n = 21 (6.05%)
Methionine (Met, M)
n = 13 (3.75%)
Proline (Pro, P)
n = 22 (6.34%)
Phenylalanine (Phe, F)
n = 12 (3.46%)
Tyrosine (Tyr, Y)
n = 7 (2.02%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 12 (3.46%)
Glutamine (Gln, Q)
n = 13 (3.75%)
Histidine (His, H)
n = 7 (2.02%)
Lysine (Lys, K)
n = 9 (2.59%)
Arginine (Arg, R)
n = 4 (1.15%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 7 | 14 | 6 | 15 | 22 | 25 | 12 | 2 | 11 | 2 | 3 | 2 | 4 | 2 | 3 | 9 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 7 | 0 | 0 | 4 | 23 | 12 | 1 | 5 | 6 | 3 | 4 | 5 | 8 | 8 | 1 | 10 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 18 | 13 | 1 | 1 | 7 | 8 | 2 | 0 | 5 | 1 | 6 | 1 | 0 | 3 | 9 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 4 | 4 | 1 | 1 | 1 | 9 | 0 | 0 | 1 | 3 | 0 | 0 | 0 | 0 | 0 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 76 | 120 | 102 | 50 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 38 | 122 | 55 | 133 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 34 | 135 | 118 | 61 | ||||||||||||
| ND4 (size: 1381 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 26 (5.66%)
Alanine (Ala, A)
n = 39 (8.5%)
Serine (Ser, S)
n = 29 (6.32%)
Threonine (Thr, T)
n = 42 (9.15%)
Cysteine (Cys, C)
n = 4 (0.87%)
Valine (Val, V)
n = 15 (3.27%)
Leucine (Leu, L)
n = 98 (21.35%)
Isoleucine (Ile, I)
n = 34 (7.41%)
Methionine (Met, M)
n = 25 (5.45%)
Proline (Pro, P)
n = 28 (6.1%)
Phenylalanine (Phe, F)
n = 15 (3.27%)
Tyrosine (Tyr, Y)
n = 14 (3.05%)
Tryptophan (Trp, W)
n = 18 (3.92%)
Aspartic acid (Asp, D)
n = 4 (0.87%)
Glutamic acid (Glu, E)
n = 13 (2.83%)
Asparagine (Asn, N)
n = 11 (2.4%)
Glutamine (Gln, Q)
n = 12 (2.61%)
Histidine (His, H)
n = 12 (2.61%)
Lysine (Lys, K)
n = 9 (1.96%)
Arginine (Arg, R)
n = 11 (2.4%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 16 | 18 | 11 | 20 | 26 | 33 | 8 | 11 | 11 | 1 | 3 | 4 | 6 | 2 | 6 | 9 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 14 | 2 | 2 | 3 | 19 | 17 | 0 | 2 | 8 | 8 | 8 | 8 | 12 | 8 | 0 | 6 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 16 | 19 | 1 | 4 | 7 | 7 | 1 | 2 | 8 | 5 | 9 | 5 | 0 | 3 | 8 | 4 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 8 | 9 | 4 | 1 | 3 | 9 | 0 | 0 | 3 | 7 | 1 | 0 | 0 | 0 | 0 | 13 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 97 | 150 | 131 | 81 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 69 | 128 | 75 | 187 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 45 | 160 | 169 | 85 | ||||||||||||
| ND4L (size: 297 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 12 (12.24%)
Serine (Ser, S)
n = 12 (12.24%)
Threonine (Thr, T)
n = 9 (9.18%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 2 (2.04%)
Leucine (Leu, L)
n = 23 (23.47%)
Isoleucine (Ile, I)
n = 2 (2.04%)
Methionine (Met, M)
n = 5 (5.1%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 7 (7.14%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 2 (2.04%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 2 (2.04%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 3 (3.06%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 1 | 1 | 3 | 2 | 4 | 8 | 3 | 3 | 2 | 1 | 2 | 0 | 0 | 0 | 3 | 4 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 1 | 2 | 4 | 4 | 3 | 0 | 0 | 2 | 2 | 0 | 0 | 2 | 0 | 0 | 2 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 6 | 1 | 0 | 2 | 2 | 5 | 0 | 1 | 2 | 0 | 0 | 0 | 1 | 0 | 2 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 1 | 1 | 1 | 1 | 0 | 0 | 1 | 0 | 2 | 0 | 0 | 0 | 1 | 0 | 1 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 21 | 29 | 21 | 25 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 14 | 31 | 14 | 37 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 8 | 35 | 32 | 21 | ||||||||||||
| ND5 (size: 1839 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 30 (4.9%)
Alanine (Ala, A)
n = 58 (9.48%)
Serine (Ser, S)
n = 44 (7.19%)
Threonine (Thr, T)
n = 59 (9.64%)
Cysteine (Cys, C)
n = 6 (0.98%)
Valine (Val, V)
n = 27 (4.41%)
Leucine (Leu, L)
n = 95 (15.52%)
Isoleucine (Ile, I)
n = 48 (7.84%)
Methionine (Met, M)
n = 30 (4.9%)
Proline (Pro, P)
n = 30 (4.9%)
Phenylalanine (Phe, F)
n = 40 (6.54%)
Tyrosine (Tyr, Y)
n = 10 (1.63%)
Tryptophan (Trp, W)
n = 14 (2.29%)
Aspartic acid (Asp, D)
n = 11 (1.8%)
Glutamic acid (Glu, E)
n = 12 (1.96%)
Asparagine (Asn, N)
n = 29 (4.74%)
Glutamine (Gln, Q)
n = 19 (3.1%)
Histidine (His, H)
n = 17 (2.78%)
Lysine (Lys, K)
n = 20 (3.27%)
Arginine (Arg, R)
n = 10 (1.63%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 26 | 22 | 14 | 21 | 21 | 38 | 7 | 7 | 12 | 7 | 8 | 7 | 10 | 2 | 11 | 29 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 16 | 1 | 5 | 13 | 27 | 16 | 2 | 2 | 12 | 10 | 5 | 9 | 12 | 8 | 1 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 30 | 21 | 2 | 7 | 11 | 13 | 0 | 1 | 12 | 4 | 6 | 3 | 1 | 4 | 25 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 16 | 10 | 2 | 5 | 6 | 18 | 2 | 2 | 2 | 6 | 0 | 0 | 0 | 1 | 0 | 11 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 137 | 163 | 198 | 110 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 72 | 177 | 119 | 240 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 50 | 243 | 195 | 120 | ||||||||||||
| ND6 (size: 522 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 24 (13.87%)
Alanine (Ala, A)
n = 18 (10.4%)
Serine (Ser, S)
n = 10 (5.78%)
Threonine (Thr, T)
n = 6 (3.47%)
Cysteine (Cys, C)
n = 3 (1.73%)
Valine (Val, V)
n = 27 (15.61%)
Leucine (Leu, L)
n = 29 (16.76%)
Isoleucine (Ile, I)
n = 4 (2.31%)
Methionine (Met, M)
n = 9 (5.2%)
Proline (Pro, P)
n = 6 (3.47%)
Phenylalanine (Phe, F)
n = 8 (4.62%)
Tyrosine (Tyr, Y)
n = 9 (5.2%)
Tryptophan (Trp, W)
n = 5 (2.89%)
Aspartic acid (Asp, D)
n = 3 (1.73%)
Glutamic acid (Glu, E)
n = 6 (3.47%)
Asparagine (Asn, N)
n = 1 (0.58%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 1 (0.58%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 4 (2.31%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 4 | 0 | 1 | 3 | 1 | 2 | 4 | 16 | 0 | 0 | 10 | 2 | 8 | 7 | 7 | 1 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 8 | 3 | 0 | 10 | 2 | 5 | 1 | 6 | 1 | 5 | 12 | 4 | 1 | 1 | 0 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 0 | 0 | 3 | 2 | 2 | 1 | 2 | 3 | 0 | 8 | 1 | 3 | 3 | 1 | 0 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 0 | 4 | 2 | 3 | 0 | 0 | 0 | 0 | 0 | 3 | 1 | 0 | 0 | 0 | 1 | 2 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 78 | 21 | 23 | 52 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 39 | 37 | 21 | 77 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 47 | 11 | 48 | 68 | ||||||||||||
| Total protein-coding genes (size: 11429 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 239 (6.28%)
Alanine (Ala, A)
n = 358 (9.41%)
Serine (Ser, S)
n = 241 (6.33%)
Threonine (Thr, T)
n = 299 (7.86%)
Cysteine (Cys, C)
n = 25 (0.66%)
Valine (Val, V)
n = 227 (5.96%)
Leucine (Leu, L)
n = 647 (17.0%)
Isoleucine (Ile, I)
n = 263 (6.91%)
Methionine (Met, M)
n = 156 (4.1%)
Proline (Pro, P)
n = 224 (5.89%)
Phenylalanine (Phe, F)
n = 230 (6.04%)
Tyrosine (Tyr, Y)
n = 108 (2.84%)
Tryptophan (Trp, W)
n = 118 (3.1%)
Aspartic acid (Asp, D)
n = 73 (1.92%)
Glutamic acid (Glu, E)
n = 105 (2.76%)
Asparagine (Asn, N)
n = 117 (3.07%)
Glutamine (Gln, Q)
n = 93 (2.44%)
Histidine (His, H)
n = 106 (2.79%)
Lysine (Lys, K)
n = 72 (1.89%)
Arginine (Arg, R)
n = 76 (2.0%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 131 | 132 | 62 | 144 | 135 | 234 | 53 | 65 | 70 | 23 | 62 | 63 | 77 | 22 | 69 | 161 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 94 | 8 | 17 | 71 | 157 | 120 | 6 | 35 | 63 | 90 | 46 | 63 | 71 | 83 | 4 | 46 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 113 | 122 | 13 | 45 | 62 | 73 | 6 | 8 | 46 | 32 | 76 | 13 | 7 | 26 | 91 | 27 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 79 | 88 | 17 | 18 | 55 | 69 | 3 | 4 | 10 | 52 | 10 | 0 | 0 | 6 | 1 | 105 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 990 | 1062 | 956 | 746 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 507 | 1055 | 681 | 1511 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 318 | 1331 | 1316 | 789 | ||||||||||||
Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​T​h​u​n​n​u​s​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​a​c​c​o​y​i​i​"​[​O​r​g​a​n​i​s​m​]​)​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
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If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.
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