Viewing data for Sphenodon punctatus


Scientific name Sphenodon punctatus
Common name Tuatara
Maximum lifespan 90.00 years (Sphenodon punctatus@AnAge)

Total mtDNA (size: 15181 bases) GC AT G C A T
Base content (bases) 6051 9130 3921 2130 4083 5047
Base content per 1 kb (bases) 399 601 258 140 269 332
Base content (%) 39.9% 60.1%
Total protein-coding genes (size: 9561 bases) GC AT G C A T
Base content (bases) 3861 5700 2615 1246 2569 3131
Base content per 1 kb (bases) 404 596 274 130 269 327
Base content (%) 40.4% 59.6%
D-loop (size: 1749 bases) GC AT G C A T
Base content (bases) 602 1147 396 206 615 532
Base content per 1 kb (bases) 344 656 226 118 352 304
Base content (%) 34.4% 65.6%
Total tRNA-coding genes (size: 1436 bases) GC AT G C A T
Base content (bases) 578 858 335 243 377 481
Base content per 1 kb (bases) 403 597 233 169 263 335
Base content (%) 40.3% 59.7%
Total rRNA-coding genes (size: 2422 bases) GC AT G C A T
Base content (bases) 999 1423 562 437 521 902
Base content per 1 kb (bases) 412 588 232 180 215 372
Base content (%) 41.2% 58.8%
12S rRNA gene (size: 905 bases) GC AT G C A T
Base content (bases) 392 513 220 172 185 328
Base content per 1 kb (bases) 433 567 243 190 204 362
Base content (%) 43.3% 56.7%
16S rRNA gene (size: 1517 bases) GC AT G C A T
Base content (bases) 607 910 342 265 336 574
Base content per 1 kb (bases) 400 600 225 175 221 378
Base content (%) 40.0% 60.0%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 288 396 199 89 178 218
Base content per 1 kb (bases) 421 579 291 130 260 319
Base content (%) 42.1% 57.9%
ATP8 (size: 154 bases) GC AT G C A T
Base content (bases) 73 81 48 25 36 45
Base content per 1 kb (bases) 474 526 312 162 234 292
Base content (%) 47.4% 52.6%
COX1 (size: 1560 bases) GC AT G C A T
Base content (bases) 644 916 408 236 424 492
Base content per 1 kb (bases) 413 587 262 151 272 315
Base content (%) 41.3% 58.7%
COX2 (size: 687 bases) GC AT G C A T
Base content (bases) 288 399 202 86 159 240
Base content per 1 kb (bases) 419 581 294 125 231 349
Base content (%) 41.9% 58.1%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 328 456 199 129 237 219
Base content per 1 kb (bases) 418 582 254 165 302 279
Base content (%) 41.8% 58.2%
CYTB (size: 1143 bases) GC AT G C A T
Base content (bases) 467 676 315 152 321 355
Base content per 1 kb (bases) 409 591 276 133 281 311
Base content (%) 40.9% 59.1%
ND1 (size: 967 bases) GC AT G C A T
Base content (bases) 363 604 238 125 277 327
Base content per 1 kb (bases) 375 625 246 129 286 338
Base content (%) 37.5% 62.5%
ND2 (size: 1041 bases) GC AT G C A T
Base content (bases) 398 643 291 107 293 350
Base content per 1 kb (bases) 382 618 280 103 281 336
Base content (%) 38.2% 61.8%
ND3 (size: 349 bases) GC AT G C A T
Base content (bases) 139 210 97 42 106 104
Base content per 1 kb (bases) 398 602 278 120 304 298
Base content (%) 39.8% 60.2%
ND4 (size: 1383 bases) GC AT G C A T
Base content (bases) 539 844 379 160 391 453
Base content per 1 kb (bases) 390 610 274 116 283 328
Base content (%) 39.0% 61.0%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 116 181 77 39 93 88
Base content per 1 kb (bases) 391 609 259 131 313 296
Base content (%) 39.1% 60.9%
ND5: No data available for this section.
ND6 (size: 525 bases) GC AT G C A T
Base content (bases) 221 304 163 58 58 246
Base content per 1 kb (bases) 421 579 310 110 110 469
Base content (%) 42.1% 57.9%

ATP6 (size: 684 bases)
Amino acid sequence: MIPNLFEIFATPYLLKMPLMWLAVMMPAMVLFTPSQHLVTGRYILLKKWTMKQFTKQIMNPLPTQGHKWTVFFMTLMMTLTSMNMISLLP View full
Amino acid frequencies:
Glycine (Gly, G)
n = 6 (2.64%)
Alanine (Ala, A)
n = 22 (9.69%)
Serine (Ser, S)
n = 7 (3.08%)
Threonine (Thr, T)
n = 25 (11.01%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 16 (7.05%)
Leucine (Leu, L)
n = 45 (19.82%)
Isoleucine (Ile, I)
n = 16 (7.05%)
Methionine (Met, M)
n = 18 (7.93%)
Proline (Pro, P)
n = 17 (7.49%)
Phenylalanine (Phe, F)
n = 10 (4.41%)
Tyrosine (Tyr, Y)
n = 4 (1.76%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 5 (2.2%)
Asparagine (Asn, N)
n = 5 (2.2%)
Glutamine (Gln, Q)
n = 8 (3.52%)
Histidine (His, H)
n = 6 (2.64%)
Lysine (Lys, K)
n = 8 (3.52%)
Arginine (Arg, R)
n = 4 (1.76%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 9 12 10 7 18 1 8 7 1 2 0 10 4 6 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 0 2 9 10 1 1 1 2 2 2 5 8 2 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 11 2 0 2 2 0 1 2 2 2 1 1 0 5 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 5 0 0 0 7 1 1 2 1 0 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
49 71 75 33
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
18 68 37 105
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
22 60 106 40
ATP8 (size: 154 bases)
Amino acid sequence: MPQLNPAPWLSTMVLVWLSLGVMHQKVKLFQNIYPTTMCCGAPRPPWPWPW
Amino acid frequencies:
Glycine (Gly, G)
n = 2 (4.0%)
Alanine (Ala, A)
n = 2 (4.0%)
Serine (Ser, S)
n = 2 (4.0%)
Threonine (Thr, T)
n = 3 (6.0%)
Cysteine (Cys, C)
n = 2 (4.0%)
Valine (Val, V)
n = 4 (8.0%)
Leucine (Leu, L)
n = 6 (12.0%)
Isoleucine (Ile, I)
n = 1 (2.0%)
Methionine (Met, M)
n = 4 (8.0%)
Proline (Pro, P)
n = 9 (18.0%)
Phenylalanine (Phe, F)
n = 1 (2.0%)
Tyrosine (Tyr, Y)
n = 1 (2.0%)
Tryptophan (Trp, W)
n = 5 (10.0%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 0 (0%)
Asparagine (Asn, N)
n = 2 (4.0%)
Glutamine (Gln, Q)
n = 3 (6.0%)
Histidine (His, H)
n = 1 (2.0%)
Lysine (Lys, K)
n = 2 (4.0%)
Arginine (Arg, R)
n = 1 (2.0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 0 2 0 1 4 0 1 3 0 0 1 1 2 0 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 2 0 2 0 0 0 0 1 1 3 3 2 1 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 2 0 0 0 2 0 0 0 1 0 1 0 1 1 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 0 0 0 0 2 0 1 0 0 0 0 0 0 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
8 19 12 12
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
10 16 9 16
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
7 13 24 7
COX1 (size: 1560 bases)
Amino acid sequence: ILPLPYKRWLYSTNHKDIGTLYLLFGAWAGMVGTSLSLLIRGELSYPGTLMGNDQIYNVIVTAHAFTMIFFMVMPVMIGGFGNWLIPLMI View full
Amino acid frequencies:
Glycine (Gly, G)
n = 46 (8.86%)
Alanine (Ala, A)
n = 35 (6.74%)
Serine (Ser, S)
n = 34 (6.55%)
Threonine (Thr, T)
n = 39 (7.51%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 28 (5.39%)
Leucine (Leu, L)
n = 66 (12.72%)
Isoleucine (Ile, I)
n = 42 (8.09%)
Methionine (Met, M)
n = 28 (5.39%)
Proline (Pro, P)
n = 31 (5.97%)
Phenylalanine (Phe, F)
n = 39 (7.51%)
Tyrosine (Tyr, Y)
n = 21 (4.05%)
Tryptophan (Trp, W)
n = 18 (3.47%)
Aspartic acid (Asp, D)
n = 15 (2.89%)
Glutamic acid (Glu, E)
n = 11 (2.12%)
Asparagine (Asn, N)
n = 18 (3.47%)
Glutamine (Gln, Q)
n = 9 (1.73%)
Histidine (His, H)
n = 20 (3.85%)
Lysine (Lys, K)
n = 11 (2.12%)
Arginine (Arg, R)
n = 8 (1.54%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
22 20 22 7 7 28 2 19 9 0 1 5 22 0 21 18
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 0 6 10 18 1 2 7 33 4 5 8 17 1 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
14 19 0 7 8 13 0 1 5 7 14 1 3 3 15 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
16 9 2 1 14 10 1 0 2 6 0 0 1 0 0 17
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
135 112 145 128
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
79 133 105 203
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
22 163 242 93
COX2 (size: 687 bases)
Amino acid sequence: MAYPMQIALQNASSPLMEELLHFHDHALMVILLISTSVFYMITMTLTTKLTHINATDAPITETVWTILPSIILVTIALPSLQILYLMDEI View full
Amino acid frequencies:
Glycine (Gly, G)
n = 7 (3.07%)
Alanine (Ala, A)
n = 14 (6.14%)
Serine (Ser, S)
n = 18 (7.89%)
Threonine (Thr, T)
n = 20 (8.77%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 13 (5.7%)
Leucine (Leu, L)
n = 28 (12.28%)
Isoleucine (Ile, I)
n = 23 (10.09%)
Methionine (Met, M)
n = 10 (4.39%)
Proline (Pro, P)
n = 13 (5.7%)
Phenylalanine (Phe, F)
n = 8 (3.51%)
Tyrosine (Tyr, Y)
n = 9 (3.95%)
Tryptophan (Trp, W)
n = 6 (2.63%)
Aspartic acid (Asp, D)
n = 10 (4.39%)
Glutamic acid (Glu, E)
n = 11 (4.82%)
Asparagine (Asn, N)
n = 7 (3.07%)
Glutamine (Gln, Q)
n = 7 (3.07%)
Histidine (His, H)
n = 11 (4.82%)
Lysine (Lys, K)
n = 7 (3.07%)
Arginine (Arg, R)
n = 4 (1.75%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 13 9 3 2 18 2 2 7 0 1 3 8 1 4 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 2 1 8 5 0 0 3 4 0 2 2 8 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 13 0 2 4 9 0 0 3 1 8 1 1 1 6 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 9 2 2 8 7 0 0 2 2 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
55 60 70 44
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
22 62 63 82
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
9 80 107 33
COX3 (size: 784 bases)
Amino acid sequence: MPTQTHTYHIVEQSPWPITGAMSALLMTSGLAVWFHYNSTTLIVTGLLSLLLTMYQWWRDIMREGTFQGHHTLFVQKGLRYGMILFIVSE View full
Amino acid frequencies:
Glycine (Gly, G)
n = 20 (7.69%)
Alanine (Ala, A)
n = 14 (5.38%)
Serine (Ser, S)
n = 17 (6.54%)
Threonine (Thr, T)
n = 27 (10.38%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 18 (6.92%)
Leucine (Leu, L)
n = 32 (12.31%)
Isoleucine (Ile, I)
n = 16 (6.15%)
Methionine (Met, M)
n = 9 (3.46%)
Proline (Pro, P)
n = 11 (4.23%)
Phenylalanine (Phe, F)
n = 25 (9.62%)
Tyrosine (Tyr, Y)
n = 11 (4.23%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 9 (3.46%)
Asparagine (Asn, N)
n = 3 (1.15%)
Glutamine (Gln, Q)
n = 8 (3.08%)
Histidine (His, H)
n = 15 (5.77%)
Lysine (Lys, K)
n = 3 (1.15%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 7 8 5 3 11 0 11 8 0 3 3 10 2 15 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 1 0 8 6 0 3 3 8 6 2 3 4 2 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 13 1 5 5 3 1 1 2 7 4 3 2 1 2 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 5 4 2 3 3 0 0 0 5 0 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
66 58 61 76
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
41 66 54 100
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
22 75 104 60
CYTB (size: 1143 bases)
Amino acid sequence: MIETIRKHHPIIKVLNHAFIDLPSPSNISAWWNFGSLLGLCLIIQLITGVFLAMHYTADVSLAFSSISHICRNVNYGWLIRNMHANGASL View full
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (6.84%)
Alanine (Ala, A)
n = 20 (5.26%)
Serine (Ser, S)
n = 26 (6.84%)
Threonine (Thr, T)
n = 28 (7.37%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 18 (4.74%)
Leucine (Leu, L)
n = 56 (14.74%)
Isoleucine (Ile, I)
n = 39 (10.26%)
Methionine (Met, M)
n = 18 (4.74%)
Proline (Pro, P)
n = 23 (6.05%)
Phenylalanine (Phe, F)
n = 24 (6.32%)
Tyrosine (Tyr, Y)
n = 16 (4.21%)
Tryptophan (Trp, W)
n = 12 (3.16%)
Aspartic acid (Asp, D)
n = 6 (1.58%)
Glutamic acid (Glu, E)
n = 7 (1.84%)
Asparagine (Asn, N)
n = 21 (5.53%)
Glutamine (Gln, Q)
n = 5 (1.32%)
Histidine (His, H)
n = 14 (3.68%)
Lysine (Lys, K)
n = 10 (2.63%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
18 21 15 5 12 15 4 17 4 1 1 4 11 2 9 15
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 2 2 8 10 0 1 6 16 3 2 5 15 1 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 13 0 3 10 9 1 1 2 5 11 0 3 8 13 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 6 1 0 6 8 2 0 2 5 1 0 0 0 1 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
77 86 119 99
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
52 94 80 155
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
23 135 156 67
ND1 (size: 967 bases)
Amino acid sequence: MLSLLTWLMNPLMYIIPILIAVAFLTLLERKILGYMQLRKGPNMVGPKGILQPIADGLKLFMKEPVRPYAASQALFIMAPILALSLSIML View full
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (5.3%)
Alanine (Ala, A)
n = 23 (7.17%)
Serine (Ser, S)
n = 24 (7.48%)
Threonine (Thr, T)
n = 23 (7.17%)
Cysteine (Cys, C)
n = 2 (0.62%)
Valine (Val, V)
n = 11 (3.43%)
Leucine (Leu, L)
n = 52 (16.2%)
Isoleucine (Ile, I)
n = 27 (8.41%)
Methionine (Met, M)
n = 32 (9.97%)
Proline (Pro, P)
n = 22 (6.85%)
Phenylalanine (Phe, F)
n = 15 (4.67%)
Tyrosine (Tyr, Y)
n = 10 (3.12%)
Tryptophan (Trp, W)
n = 11 (3.43%)
Aspartic acid (Asp, D)
n = 4 (1.25%)
Glutamic acid (Glu, E)
n = 11 (3.43%)
Asparagine (Asn, N)
n = 12 (3.74%)
Glutamine (Gln, Q)
n = 8 (2.49%)
Histidine (His, H)
n = 2 (0.62%)
Lysine (Lys, K)
n = 8 (2.49%)
Arginine (Arg, R)
n = 8 (2.49%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
16 11 28 7 6 20 2 17 8 0 1 3 7 0 7 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 2 2 7 12 2 1 6 6 4 5 1 16 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 13 1 7 5 9 1 0 2 6 4 2 0 6 6 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 9 2 1 3 7 1 0 1 7 0 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
66 75 104 77
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
40 90 55 137
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
19 73 168 62
ND2 (size: 1041 bases)
Amino acid sequence: MHPSITSLLLIALSTSTIITMSSYHWMFAWAGLEINMLSMLPLISKEHHPRAVEATMKYFMTQAAASAMLIFASTINAWQTAQWDISLLT View full
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.47%)
Alanine (Ala, A)
n = 24 (6.94%)
Serine (Ser, S)
n = 31 (8.96%)
Threonine (Thr, T)
n = 33 (9.54%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 10 (2.89%)
Leucine (Leu, L)
n = 66 (19.08%)
Isoleucine (Ile, I)
n = 31 (8.96%)
Methionine (Met, M)
n = 30 (8.67%)
Proline (Pro, P)
n = 18 (5.2%)
Phenylalanine (Phe, F)
n = 14 (4.05%)
Tyrosine (Tyr, Y)
n = 7 (2.02%)
Tryptophan (Trp, W)
n = 10 (2.89%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 14 (4.05%)
Glutamine (Gln, Q)
n = 13 (3.76%)
Histidine (His, H)
n = 12 (3.47%)
Lysine (Lys, K)
n = 10 (2.89%)
Arginine (Arg, R)
n = 4 (1.16%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
21 10 24 6 9 20 4 20 13 0 4 0 5 1 5 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 0 4 16 4 0 1 2 7 2 0 6 12 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
14 15 0 3 8 13 0 0 7 3 4 0 7 4 10 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 5 0 0 2 9 1 0 1 3 0 0 0 1 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
53 86 125 83
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
33 99 64 151
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
21 106 161 59
ND3 (size: 1041 bases)
Amino acid sequence: MHPSITSLLLIALSTSTIITMSSYHWMFAWAGLEINMLSMLPLISKEHHPRAVEATMKYFMTQAAASAMLIFASTINAWQTAQWDISLLT View full
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.47%)
Alanine (Ala, A)
n = 24 (6.94%)
Serine (Ser, S)
n = 31 (8.96%)
Threonine (Thr, T)
n = 33 (9.54%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 10 (2.89%)
Leucine (Leu, L)
n = 66 (19.08%)
Isoleucine (Ile, I)
n = 31 (8.96%)
Methionine (Met, M)
n = 30 (8.67%)
Proline (Pro, P)
n = 18 (5.2%)
Phenylalanine (Phe, F)
n = 14 (4.05%)
Tyrosine (Tyr, Y)
n = 7 (2.02%)
Tryptophan (Trp, W)
n = 10 (2.89%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 14 (4.05%)
Glutamine (Gln, Q)
n = 13 (3.76%)
Histidine (His, H)
n = 12 (3.47%)
Lysine (Lys, K)
n = 10 (2.89%)
Arginine (Arg, R)
n = 4 (1.16%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
21 10 24 6 9 20 4 20 13 0 4 0 5 1 5 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 0 4 16 4 0 1 2 7 2 0 6 12 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
14 15 0 3 8 13 0 0 7 3 4 0 7 4 10 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 5 0 0 2 9 1 0 1 3 0 0 0 1 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
53 86 125 83
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
33 99 64 151
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
21 106 161 59
ND4 (size: 1383 bases)
Amino acid sequence: MLKIIIPTIFLLPVILLSNPKSTWMNFFINNLLISATSLTILKPQINTEWKFSSPYTGLDHISSPLLVLTTWLLPLMTLASQNSLKKEPY View full
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (3.91%)
Alanine (Ala, A)
n = 27 (5.87%)
Serine (Ser, S)
n = 35 (7.61%)
Threonine (Thr, T)
n = 46 (10.0%)
Cysteine (Cys, C)
n = 5 (1.09%)
Valine (Val, V)
n = 16 (3.48%)
Leucine (Leu, L)
n = 92 (20.0%)
Isoleucine (Ile, I)
n = 39 (8.48%)
Methionine (Met, M)
n = 27 (5.87%)
Proline (Pro, P)
n = 26 (5.65%)
Phenylalanine (Phe, F)
n = 23 (5.0%)
Tyrosine (Tyr, Y)
n = 12 (2.61%)
Tryptophan (Trp, W)
n = 12 (2.61%)
Aspartic acid (Asp, D)
n = 3 (0.65%)
Glutamic acid (Glu, E)
n = 11 (2.39%)
Asparagine (Asn, N)
n = 23 (5.0%)
Glutamine (Gln, Q)
n = 10 (2.17%)
Histidine (His, H)
n = 12 (2.61%)
Lysine (Lys, K)
n = 14 (3.04%)
Arginine (Arg, R)
n = 9 (1.96%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
21 18 22 17 10 31 8 24 9 1 2 3 9 2 9 14
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 3 2 2 15 10 0 1 6 9 2 2 5 18 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 28 5 6 9 10 0 2 8 9 3 0 2 5 18 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 9 2 2 1 11 3 3 1 5 0 0 0 1 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
75 123 159 104
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
54 124 86 197
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
31 132 208 90
ND4L (size: 297 bases)
Amino acid sequence: MPTILFNLGLAFMTSMMGLSLQRSHLISALLCLEGMMLTLFLMLTTWATEQQSSLLFSALMMLLTLSACGAGTGLSLLVTTTRTHGSSNM View full
Amino acid frequencies:
Glycine (Gly, G)
n = 7 (7.14%)
Alanine (Ala, A)
n = 6 (6.12%)
Serine (Ser, S)
n = 11 (11.22%)
Threonine (Thr, T)
n = 12 (12.24%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 1 (1.02%)
Leucine (Leu, L)
n = 25 (25.51%)
Isoleucine (Ile, I)
n = 2 (2.04%)
Methionine (Met, M)
n = 10 (10.2%)
Proline (Pro, P)
n = 1 (1.02%)
Phenylalanine (Phe, F)
n = 4 (4.08%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 5 (5.1%)
Glutamine (Gln, Q)
n = 4 (4.08%)
Histidine (His, H)
n = 2 (2.04%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 2 (2.04%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 1 9 5 2 4 3 9 3 1 0 0 1 0 3 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 3 2 3 0 1 0 5 2 0 1 0 0 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 7 0 3 3 3 0 1 1 0 0 0 2 3 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 2 0 0 0 0 0 0 1 1 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
16 23 31 29
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
15 28 14 42
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
8 26 43 22
ND5: No data available for this section.
ND6 (size: 525 bases)
Amino acid sequence: MTYAIFLFGLCFVFGLLLVASNPSPYYGVLGLLMASAVGGGFLVGVGSSFLSVILFLIYSGGMLVVFAYSVALAADFYPEAWGSRSVAVN View full
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (14.94%)
Alanine (Ala, A)
n = 13 (7.47%)
Serine (Ser, S)
n = 19 (10.92%)
Threonine (Thr, T)
n = 3 (1.72%)
Cysteine (Cys, C)
n = 2 (1.15%)
Valine (Val, V)
n = 27 (15.52%)
Leucine (Leu, L)
n = 28 (16.09%)
Isoleucine (Ile, I)
n = 6 (3.45%)
Methionine (Met, M)
n = 3 (1.72%)
Proline (Pro, P)
n = 3 (1.72%)
Phenylalanine (Phe, F)
n = 16 (9.2%)
Tyrosine (Tyr, Y)
n = 7 (4.02%)
Tryptophan (Trp, W)
n = 3 (1.72%)
Aspartic acid (Asp, D)
n = 4 (2.3%)
Glutamic acid (Glu, E)
n = 4 (2.3%)
Asparagine (Asn, N)
n = 2 (1.15%)
Glutamine (Gln, Q)
n = 1 (0.57%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 2 (1.15%)
Arginine (Arg, R)
n = 5 (2.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
6 0 1 4 0 1 1 8 0 1 15 3 2 7 15 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 2 0 10 1 0 2 13 1 1 11 2 1 0 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 1 0 12 1 1 2 3 0 7 0 2 14 2 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 1 3 4 0 1 1 3 0 0 2 0 1 0 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
74 15 20 66
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
40 35 20 80
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
49 8 18 100
Total protein-coding genes (size: 9574 bases)
Amino acid sequence: MLSLLTWLMNPLMYIIPILIAVAFLTLLERKILGYMQLRKGPNMVGPKGILQPIADGLKLFMKEPVRPYAASQALFIMAPILALSLSIML View full
Amino acid frequencies:
Glycine (Gly, G)
n = 191 (5.99%)
Alanine (Ala, A)
n = 208 (6.52%)
Serine (Ser, S)
n = 230 (7.21%)
Threonine (Thr, T)
n = 269 (8.44%)
Cysteine (Cys, C)
n = 21 (0.66%)
Valine (Val, V)
n = 165 (5.17%)
Leucine (Leu, L)
n = 523 (16.4%)
Isoleucine (Ile, I)
n = 250 (7.84%)
Methionine (Met, M)
n = 197 (6.18%)
Proline (Pro, P)
n = 182 (5.71%)
Phenylalanine (Phe, F)
n = 185 (5.8%)
Tyrosine (Tyr, Y)
n = 100 (3.14%)
Tryptophan (Trp, W)
n = 100 (3.14%)
Aspartic acid (Asp, D)
n = 51 (1.6%)
Glutamic acid (Glu, E)
n = 82 (2.57%)
Asparagine (Asn, N)
n = 116 (3.64%)
Glutamine (Gln, Q)
n = 80 (2.51%)
Histidine (His, H)
n = 96 (3.01%)
Lysine (Lys, K)
n = 76 (2.38%)
Arginine (Arg, R)
n = 60 (1.88%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
136 114 157 72 65 178 28 143 75 5 31 26 87 21 98 87
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
40 6 15 33 90 78 7 23 41 92 35 28 39 106 9 37
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
84 139 9 51 57 75 5 10 32 49 51 11 37 34 82 28
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
68 65 17 13 38 66 10 8 14 35 3 0 2 5 1 89
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
697 761 952 780
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
416 847 607 1320
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
240 903 1390 657 

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Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.