Viewing data for Hynobius nebulosus


Scientific name Hynobius nebulosus
Common name Clouded salamander
Maximum lifespan 14.20 years (Hynobius nebulosus@AnAge)

Total mtDNA (size: 16447 bases) GC AT G C A T
Base content (bases) 5622 10825 3407 2215 5289 5536
Base content per 1 kb (bases) 342 658 207 135 322 337
Base content (%) 34.2% 65.8%
Total protein-coding genes (size: 11364 bases) GC AT G C A T
Base content (bases) 3882 7482 2444 1438 3788 3694
Base content per 1 kb (bases) 342 658 215 127 333 325
Base content (%) 34.2% 65.8%
D-loop (size: 804 bases) GC AT G C A T
Base content (bases) 278 526 159 119 281 245
Base content per 1 kb (bases) 346 654 198 148 350 305
Base content (%) 34.6% 65.4%
Total tRNA-coding genes (size: 1533 bases) GC AT G C A T
Base content (bases) 535 998 305 230 466 532
Base content per 1 kb (bases) 349 651 199 150 304 347
Base content (%) 34.9% 65.1%
Total rRNA-coding genes (size: 2536 bases) GC AT G C A T
Base content (bases) 866 1670 459 407 666 1004
Base content per 1 kb (bases) 341 659 181 160 263 396
Base content (%) 34.1% 65.9%
12S rRNA gene (size: 934 bases) GC AT G C A T
Base content (bases) 346 588 189 157 236 352
Base content per 1 kb (bases) 370 630 202 168 253 377
Base content (%) 37.0% 63.0%
16S rRNA gene (size: 1602 bases) GC AT G C A T
Base content (bases) 520 1082 270 250 430 652
Base content per 1 kb (bases) 325 675 169 156 268 407
Base content (%) 32.5% 67.5%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 230 454 151 79 236 218
Base content per 1 kb (bases) 336 664 221 115 345 319
Base content (%) 33.6% 66.4%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 45 123 29 16 56 67
Base content per 1 kb (bases) 268 732 173 95 333 399
Base content (%) 26.8% 73.2%
COX1 (size: 1551 bases) GC AT G C A T
Base content (bases) 583 968 318 265 523 445
Base content per 1 kb (bases) 376 624 205 171 337 287
Base content (%) 37.6% 62.4%
COX2 (size: 687 bases) GC AT G C A T
Base content (bases) 231 456 139 92 216 240
Base content per 1 kb (bases) 336 664 202 134 314 349
Base content (%) 33.6% 66.4%
COX3 (size: 785 bases) GC AT G C A T
Base content (bases) 303 482 175 128 252 230
Base content per 1 kb (bases) 386 614 223 163 321 293
Base content (%) 38.6% 61.4%
CYTB (size: 1142 bases) GC AT G C A T
Base content (bases) 437 705 284 153 369 336
Base content per 1 kb (bases) 383 617 249 134 323 294
Base content (%) 38.3% 61.7%
ND1 (size: 971 bases) GC AT G C A T
Base content (bases) 311 660 200 111 344 316
Base content per 1 kb (bases) 320 680 206 114 354 325
Base content (%) 32.0% 68.0%
ND2 (size: 1042 bases) GC AT G C A T
Base content (bases) 314 728 221 93 371 357
Base content per 1 kb (bases) 301 699 212 89 356 343
Base content (%) 30.1% 69.9%
ND3 (size: 349 bases) GC AT G C A T
Base content (bases) 117 232 74 43 130 102
Base content per 1 kb (bases) 335 665 212 123 372 292
Base content (%) 33.5% 66.5%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 457 921 302 155 453 468
Base content per 1 kb (bases) 332 668 219 112 329 340
Base content (%) 33.2% 66.8%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 95 202 57 38 113 89
Base content per 1 kb (bases) 320 680 192 128 380 300
Base content (%) 32.0% 68.0%
ND5 (size: 1824 bases) GC AT G C A T
Base content (bases) 588 1236 368 220 624 612
Base content per 1 kb (bases) 322 678 202 121 342 336
Base content (%) 32.2% 67.8%
ND6 (size: 519 bases) GC AT G C A T
Base content (bases) 179 340 130 49 112 228
Base content per 1 kb (bases) 345 655 250 94 216 439
Base content (%) 34.5% 65.5%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 10 (4.41%)
Alanine (Ala, A)
n = 17 (7.49%)
Serine (Ser, S)
n = 10 (4.41%)
Threonine (Thr, T)
n = 22 (9.69%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 12 (5.29%)
Leucine (Leu, L)
n = 52 (22.91%)
Isoleucine (Ile, I)
n = 19 (8.37%)
Methionine (Met, M)
n = 12 (5.29%)
Proline (Pro, P)
n = 16 (7.05%)
Phenylalanine (Phe, F)
n = 14 (6.17%)
Tyrosine (Tyr, Y)
n = 3 (1.32%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 10 (4.41%)
Glutamine (Gln, Q)
n = 9 (3.96%)
Histidine (His, H)
n = 3 (1.32%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 4 (1.76%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
16 3 10 8 4 8 2 28 9 0 4 2 6 0 13 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 4 6 7 0 3 2 4 1 5 1 9 1 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 13 1 0 3 2 0 2 3 2 1 1 2 7 3 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 4 0 0 1 3 1 0 1 3 0 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
44 54 72 58
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
24 60 35 109
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
11 37 111 69
ATP8 (size: 168 bases)
Amino acid sequence: MPQLDPGPWFAIFLMSWIVFLLILTYKISNFNNLNEPTTQNKNMKKPESWNWPWI*
Amino acid frequencies:
Glycine (Gly, G)
n = 1 (1.82%)
Alanine (Ala, A)
n = 1 (1.82%)
Serine (Ser, S)
n = 3 (5.45%)
Threonine (Thr, T)
n = 3 (5.45%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 1 (1.82%)
Leucine (Leu, L)
n = 6 (10.91%)
Isoleucine (Ile, I)
n = 5 (9.09%)
Methionine (Met, M)
n = 3 (5.45%)
Proline (Pro, P)
n = 6 (10.91%)
Phenylalanine (Phe, F)
n = 4 (7.27%)
Tyrosine (Tyr, Y)
n = 1 (1.82%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 1 (1.82%)
Glutamic acid (Glu, E)
n = 2 (3.64%)
Asparagine (Asn, N)
n = 7 (12.73%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 4 (7.27%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 0 1 1 0 1 0 4 2 0 1 0 0 0 3 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 1 0 0 0 0 0 0 1 2 1 3 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 2 0 1 0 1 0 1 0 1 0 0 0 4 3 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 2 0 0 1 4 0 0 0 0 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
6 10 23 17
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
7 12 18 19
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
3 7 26 20
COX1 (size: 1551 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 46 (8.91%)
Alanine (Ala, A)
n = 41 (7.95%)
Serine (Ser, S)
n = 37 (7.17%)
Threonine (Thr, T)
n = 36 (6.98%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 39 (7.56%)
Leucine (Leu, L)
n = 62 (12.02%)
Isoleucine (Ile, I)
n = 40 (7.75%)
Methionine (Met, M)
n = 29 (5.62%)
Proline (Pro, P)
n = 26 (5.04%)
Phenylalanine (Phe, F)
n = 39 (7.56%)
Tyrosine (Tyr, Y)
n = 20 (3.88%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 15 (2.91%)
Glutamic acid (Glu, E)
n = 10 (1.94%)
Asparagine (Asn, N)
n = 15 (2.91%)
Glutamine (Gln, Q)
n = 7 (1.36%)
Histidine (His, H)
n = 19 (3.68%)
Lysine (Lys, K)
n = 8 (1.55%)
Arginine (Arg, R)
n = 9 (1.74%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
34 6 23 10 6 15 3 27 6 1 13 3 20 3 28 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 1 12 11 18 0 7 9 20 10 6 4 13 3 14
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 17 0 4 5 20 3 2 3 13 7 2 1 12 3 7
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
12 7 3 13 2 8 0 1 0 7 1 0 0 1 0 15
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
151 95 133 138
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
78 135 95 209
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
36 88 217 176
COX2 (size: 687 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.51%)
Alanine (Ala, A)
n = 16 (7.02%)
Serine (Ser, S)
n = 16 (7.02%)
Threonine (Thr, T)
n = 14 (6.14%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 13 (5.7%)
Leucine (Leu, L)
n = 24 (10.53%)
Isoleucine (Ile, I)
n = 21 (9.21%)
Methionine (Met, M)
n = 18 (7.89%)
Proline (Pro, P)
n = 14 (6.14%)
Phenylalanine (Phe, F)
n = 9 (3.95%)
Tyrosine (Tyr, Y)
n = 9 (3.95%)
Tryptophan (Trp, W)
n = 5 (2.19%)
Aspartic acid (Asp, D)
n = 11 (4.82%)
Glutamic acid (Glu, E)
n = 13 (5.7%)
Asparagine (Asn, N)
n = 9 (3.95%)
Glutamine (Gln, Q)
n = 9 (3.95%)
Histidine (His, H)
n = 8 (3.51%)
Lysine (Lys, K)
n = 3 (1.32%)
Arginine (Arg, R)
n = 6 (2.63%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
16 5 16 4 0 7 1 12 9 0 3 1 8 1 8 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 2 5 2 9 0 3 1 4 0 1 3 9 1 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 7 0 4 3 5 1 1 2 9 0 0 0 6 3 7
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 12 1 6 5 3 0 3 1 2 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
61 49 68 51
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
24 57 63 85
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
7 33 109 80
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 21 (8.08%)
Alanine (Ala, A)
n = 20 (7.69%)
Serine (Ser, S)
n = 15 (5.77%)
Threonine (Thr, T)
n = 18 (6.92%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 18 (6.92%)
Leucine (Leu, L)
n = 28 (10.77%)
Isoleucine (Ile, I)
n = 17 (6.54%)
Methionine (Met, M)
n = 14 (5.38%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 25 (9.62%)
Tyrosine (Tyr, Y)
n = 12 (4.62%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 6 (2.31%)
Glutamic acid (Glu, E)
n = 9 (3.46%)
Asparagine (Asn, N)
n = 3 (1.15%)
Glutamine (Gln, Q)
n = 8 (3.08%)
Histidine (His, H)
n = 14 (5.38%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 4 13 6 3 9 0 9 7 1 4 3 9 2 19 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 1 2 8 10 0 4 3 12 2 4 3 5 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 12 0 2 1 9 0 1 2 4 8 1 1 1 2 9
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 6 3 3 3 2 0 1 0 4 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
74 57 57 73
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 62 54 102
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
11 56 118 76
CYTB (size: 1141 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 27 (7.12%)
Alanine (Ala, A)
n = 25 (6.6%)
Serine (Ser, S)
n = 27 (7.12%)
Threonine (Thr, T)
n = 21 (5.54%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 17 (4.49%)
Leucine (Leu, L)
n = 53 (13.98%)
Isoleucine (Ile, I)
n = 38 (10.03%)
Methionine (Met, M)
n = 17 (4.49%)
Proline (Pro, P)
n = 23 (6.07%)
Phenylalanine (Phe, F)
n = 31 (8.18%)
Tyrosine (Tyr, Y)
n = 14 (3.69%)
Tryptophan (Trp, W)
n = 13 (3.43%)
Aspartic acid (Asp, D)
n = 9 (2.37%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 17 (4.49%)
Glutamine (Gln, Q)
n = 9 (2.37%)
Histidine (His, H)
n = 12 (3.17%)
Lysine (Lys, K)
n = 10 (2.64%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
23 15 15 9 11 14 1 18 8 1 6 2 7 2 20 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 2 3 10 10 2 2 6 15 4 5 5 12 1 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 9 0 7 5 13 0 0 2 8 6 1 0 11 6 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 4 2 3 6 10 0 2 0 6 0 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
84 87 105 104
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
53 94 77 156
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
16 103 153 108
ND1 (size: 971 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (5.28%)
Alanine (Ala, A)
n = 21 (6.52%)
Serine (Ser, S)
n = 25 (7.76%)
Threonine (Thr, T)
n = 20 (6.21%)
Cysteine (Cys, C)
n = 1 (0.31%)
Valine (Val, V)
n = 15 (4.66%)
Leucine (Leu, L)
n = 55 (17.08%)
Isoleucine (Ile, I)
n = 35 (10.87%)
Methionine (Met, M)
n = 18 (5.59%)
Proline (Pro, P)
n = 21 (6.52%)
Phenylalanine (Phe, F)
n = 21 (6.52%)
Tyrosine (Tyr, Y)
n = 11 (3.42%)
Tryptophan (Trp, W)
n = 7 (2.17%)
Aspartic acid (Asp, D)
n = 3 (0.93%)
Glutamic acid (Glu, E)
n = 11 (3.42%)
Asparagine (Asn, N)
n = 17 (5.28%)
Glutamine (Gln, Q)
n = 7 (2.17%)
Histidine (His, H)
n = 3 (0.93%)
Lysine (Lys, K)
n = 7 (2.17%)
Arginine (Arg, R)
n = 8 (2.48%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
28 7 15 11 4 13 0 26 6 1 4 1 10 0 15 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 0 8 2 11 0 4 4 6 3 4 2 15 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 11 0 5 3 14 1 2 0 4 7 0 1 11 6 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 11 0 3 0 7 0 2 1 5 0 0 0 0 0 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
67 67 99 90
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
35 85 59 144
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
9 48 157 109
ND2 (size: 1042 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (3.76%)
Alanine (Ala, A)
n = 21 (6.07%)
Serine (Ser, S)
n = 34 (9.83%)
Threonine (Thr, T)
n = 27 (7.8%)
Cysteine (Cys, C)
n = 2 (0.58%)
Valine (Val, V)
n = 4 (1.16%)
Leucine (Leu, L)
n = 72 (20.81%)
Isoleucine (Ile, I)
n = 35 (10.12%)
Methionine (Met, M)
n = 30 (8.67%)
Proline (Pro, P)
n = 17 (4.91%)
Phenylalanine (Phe, F)
n = 16 (4.62%)
Tyrosine (Tyr, Y)
n = 8 (2.31%)
Tryptophan (Trp, W)
n = 11 (3.18%)
Aspartic acid (Asp, D)
n = 3 (0.87%)
Glutamic acid (Glu, E)
n = 4 (1.16%)
Asparagine (Asn, N)
n = 18 (5.2%)
Glutamine (Gln, Q)
n = 8 (2.31%)
Histidine (His, H)
n = 9 (2.6%)
Lysine (Lys, K)
n = 11 (3.18%)
Arginine (Arg, R)
n = 4 (1.16%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
30 5 27 14 4 18 0 34 7 1 1 0 3 0 14 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 2 0 4 6 11 0 1 4 7 1 4 2 9 2 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 13 0 6 8 15 0 3 2 6 2 2 2 13 5 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 3 1 1 2 11 0 0 0 3 1 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
45 74 126 102
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
35 94 61 157
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
13 53 170 111
ND3 (size: 1042 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (3.76%)
Alanine (Ala, A)
n = 21 (6.07%)
Serine (Ser, S)
n = 34 (9.83%)
Threonine (Thr, T)
n = 27 (7.8%)
Cysteine (Cys, C)
n = 2 (0.58%)
Valine (Val, V)
n = 4 (1.16%)
Leucine (Leu, L)
n = 72 (20.81%)
Isoleucine (Ile, I)
n = 35 (10.12%)
Methionine (Met, M)
n = 30 (8.67%)
Proline (Pro, P)
n = 17 (4.91%)
Phenylalanine (Phe, F)
n = 16 (4.62%)
Tyrosine (Tyr, Y)
n = 8 (2.31%)
Tryptophan (Trp, W)
n = 11 (3.18%)
Aspartic acid (Asp, D)
n = 3 (0.87%)
Glutamic acid (Glu, E)
n = 4 (1.16%)
Asparagine (Asn, N)
n = 18 (5.2%)
Glutamine (Gln, Q)
n = 8 (2.31%)
Histidine (His, H)
n = 9 (2.6%)
Lysine (Lys, K)
n = 11 (3.18%)
Arginine (Arg, R)
n = 4 (1.16%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
30 5 27 14 4 18 0 34 7 1 1 0 3 0 14 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 2 0 4 6 11 0 1 4 7 1 4 2 9 2 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 13 0 6 8 15 0 3 2 6 2 2 2 13 5 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 3 1 1 2 11 0 0 0 3 1 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
45 74 126 102
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
35 94 61 157
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
13 53 170 111
ND4 (size: 1378 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 21 (4.59%)
Alanine (Ala, A)
n = 33 (7.21%)
Serine (Ser, S)
n = 35 (7.64%)
Threonine (Thr, T)
n = 32 (6.99%)
Cysteine (Cys, C)
n = 4 (0.87%)
Valine (Val, V)
n = 13 (2.84%)
Leucine (Leu, L)
n = 89 (19.43%)
Isoleucine (Ile, I)
n = 47 (10.26%)
Methionine (Met, M)
n = 35 (7.64%)
Proline (Pro, P)
n = 25 (5.46%)
Phenylalanine (Phe, F)
n = 17 (3.71%)
Tyrosine (Tyr, Y)
n = 17 (3.71%)
Tryptophan (Trp, W)
n = 14 (3.06%)
Aspartic acid (Asp, D)
n = 3 (0.66%)
Glutamic acid (Glu, E)
n = 13 (2.84%)
Asparagine (Asn, N)
n = 20 (4.37%)
Glutamine (Gln, Q)
n = 10 (2.18%)
Histidine (His, H)
n = 9 (1.97%)
Lysine (Lys, K)
n = 11 (2.4%)
Arginine (Arg, R)
n = 11 (2.4%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
33 14 31 15 10 19 1 42 10 0 2 2 9 0 12 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 4 0 4 6 23 0 2 3 14 2 9 4 11 1 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 15 0 4 8 16 0 3 4 9 8 1 2 10 10 7
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 10 3 2 1 10 1 1 0 10 0 0 0 0 0 13
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
83 100 152 124
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
57 118 83 201
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 84 233 127
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 8 (8.16%)
Serine (Ser, S)
n = 10 (10.2%)
Threonine (Thr, T)
n = 8 (8.16%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 3 (3.06%)
Leucine (Leu, L)
n = 19 (19.39%)
Isoleucine (Ile, I)
n = 3 (3.06%)
Methionine (Met, M)
n = 9 (9.18%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 10 (10.2%)
Tyrosine (Tyr, Y)
n = 2 (2.04%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 3 (3.06%)
Asparagine (Asn, N)
n = 3 (3.06%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 1 (1.02%)
Arginine (Arg, R)
n = 2 (2.04%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 1 7 3 0 3 1 12 2 0 0 0 2 1 9 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 3 0 2 1 5 0 0 2 1 1 1 0 1 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 3 0 2 2 3 1 1 1 1 1 0 0 1 2 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 2 1 1 0 1 0 0 0 2 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
19 17 26 37
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
12 26 17 44
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
7 14 46 32
ND5 (size: 1824 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 29 (4.78%)
Alanine (Ala, A)
n = 42 (6.92%)
Serine (Ser, S)
n = 56 (9.23%)
Threonine (Thr, T)
n = 42 (6.92%)
Cysteine (Cys, C)
n = 6 (0.99%)
Valine (Val, V)
n = 20 (3.29%)
Leucine (Leu, L)
n = 88 (14.5%)
Isoleucine (Ile, I)
n = 64 (10.54%)
Methionine (Met, M)
n = 40 (6.59%)
Proline (Pro, P)
n = 23 (3.79%)
Phenylalanine (Phe, F)
n = 48 (7.91%)
Tyrosine (Tyr, Y)
n = 14 (2.31%)
Tryptophan (Trp, W)
n = 14 (2.31%)
Aspartic acid (Asp, D)
n = 12 (1.98%)
Glutamic acid (Glu, E)
n = 12 (1.98%)
Asparagine (Asn, N)
n = 32 (5.27%)
Glutamine (Gln, Q)
n = 18 (2.97%)
Histidine (His, H)
n = 12 (1.98%)
Lysine (Lys, K)
n = 26 (4.28%)
Arginine (Arg, R)
n = 9 (1.48%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
41 23 30 20 1 23 4 35 16 2 6 3 10 1 34 14
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
10 2 4 9 5 28 0 4 4 14 7 6 1 16 0 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
15 15 2 11 5 28 1 5 6 9 5 2 5 25 7 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 10 2 7 5 26 0 2 1 6 0 0 0 1 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
115 110 215 168
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
69 152 127 260
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
36 106 270 196
ND6 (size: 519 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (11.05%)
Alanine (Ala, A)
n = 12 (6.98%)
Serine (Ser, S)
n = 14 (8.14%)
Threonine (Thr, T)
n = 4 (2.33%)
Cysteine (Cys, C)
n = 3 (1.74%)
Valine (Val, V)
n = 21 (12.21%)
Leucine (Leu, L)
n = 33 (19.19%)
Isoleucine (Ile, I)
n = 6 (3.49%)
Methionine (Met, M)
n = 8 (4.65%)
Proline (Pro, P)
n = 4 (2.33%)
Phenylalanine (Phe, F)
n = 14 (8.14%)
Tyrosine (Tyr, Y)
n = 12 (6.98%)
Tryptophan (Trp, W)
n = 5 (2.91%)
Aspartic acid (Asp, D)
n = 1 (0.58%)
Glutamic acid (Glu, E)
n = 6 (3.49%)
Asparagine (Asn, N)
n = 6 (3.49%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 4 (2.33%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
6 0 5 5 0 2 0 18 0 0 9 0 9 3 13 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 2 1 5 0 3 4 5 1 6 7 1 0 2 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 1 0 3 0 4 4 3 0 12 0 3 8 6 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 4 2 1 0 0 0 1 0 2 1 1 0 0 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
59 15 28 71
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
35 31 25 82
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
36 3 59 75
Total protein-coding genes (size: 11395 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 221 (5.82%)
Alanine (Ala, A)
n = 262 (6.9%)
Serine (Ser, S)
n = 292 (7.69%)
Threonine (Thr, T)
n = 252 (6.64%)
Cysteine (Cys, C)
n = 28 (0.74%)
Valine (Val, V)
n = 177 (4.66%)
Leucine (Leu, L)
n = 608 (16.02%)
Isoleucine (Ile, I)
n = 344 (9.06%)
Methionine (Met, M)
n = 239 (6.3%)
Proline (Pro, P)
n = 197 (5.19%)
Phenylalanine (Phe, F)
n = 256 (6.75%)
Tyrosine (Tyr, Y)
n = 126 (3.32%)
Tryptophan (Trp, W)
n = 114 (3.0%)
Aspartic acid (Asp, D)
n = 69 (1.82%)
Glutamic acid (Glu, E)
n = 100 (2.64%)
Asparagine (Asn, N)
n = 160 (4.22%)
Glutamine (Gln, Q)
n = 91 (2.4%)
Histidine (His, H)
n = 93 (2.45%)
Lysine (Lys, K)
n = 88 (2.32%)
Arginine (Arg, R)
n = 72 (1.9%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
255 89 198 114 46 136 13 274 84 7 53 17 94 13 195 61
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
41 17 11 59 59 138 6 36 39 106 40 51 26 108 12 71
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
57 121 3 51 44 136 11 25 25 81 45 13 25 108 52 45
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
48 81 19 40 29 86 2 13 4 52 3 1 0 6 0 101
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
829 762 1134 1071
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
486 953 733 1624
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
208 652 1722 1214 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​H​y​n​o​b​i​u​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ n​e​b​u​l​o​s​u​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.