Viewing data for Perca fluviatilis


Scientific name Perca fluviatilis
Common name River perch
Maximum lifespan 22.00 years (Perca fluviatilis@AnAge)

Total mtDNA (size: 16537 bases) GC AT G C A T
Base content (bases) 7425 9112 4649 2776 4576 4536
Base content per 1 kb (bases) 449 551 281 168 277 274
Base content (%) 44.9% 55.1%
Total protein-coding genes (size: 11407 bases) GC AT G C A T
Base content (bases) 5125 6282 3369 1756 3351 2931
Base content per 1 kb (bases) 449 551 295 154 294 257
Base content (%) 44.9% 55.1%
D-loop: No data available for this section.
Total tRNA-coding genes (size: 1550 bases) GC AT G C A T
Base content (bases) 703 847 392 311 371 476
Base content per 1 kb (bases) 454 546 253 201 239 307
Base content (%) 45.4% 54.6%
Total rRNA-coding genes (size: 2639 bases) GC AT G C A T
Base content (bases) 1230 1409 674 556 563 846
Base content per 1 kb (bases) 466 534 255 211 213 321
Base content (%) 46.6% 53.4%
12S rRNA gene (size: 947 bases) GC AT G C A T
Base content (bases) 460 487 249 211 195 292
Base content per 1 kb (bases) 486 514 263 223 206 308
Base content (%) 48.6% 51.4%
16S rRNA gene (size: 1692 bases) GC AT G C A T
Base content (bases) 770 922 425 345 368 554
Base content per 1 kb (bases) 455 545 251 204 217 327
Base content (%) 45.5% 54.5%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 300 384 209 91 220 164
Base content per 1 kb (bases) 439 561 306 133 322 240
Base content (%) 43.9% 56.1%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 70 98 52 18 43 55
Base content per 1 kb (bases) 417 583 310 107 256 327
Base content (%) 41.7% 58.3%
COX1 (size: 1551 bases) GC AT G C A T
Base content (bases) 689 862 402 287 498 364
Base content per 1 kb (bases) 444 556 259 185 321 235
Base content (%) 44.4% 55.6%
COX2 (size: 691 bases) GC AT G C A T
Base content (bases) 302 389 188 114 196 193
Base content per 1 kb (bases) 437 563 272 165 284 279
Base content (%) 43.7% 56.3%
COX3 (size: 785 bases) GC AT G C A T
Base content (bases) 372 413 237 135 224 189
Base content per 1 kb (bases) 474 526 302 172 285 241
Base content (%) 47.4% 52.6%
CYTB (size: 1141 bases) GC AT G C A T
Base content (bases) 513 628 337 176 355 273
Base content per 1 kb (bases) 450 550 295 154 311 239
Base content (%) 45.0% 55.0%
ND1 (size: 975 bases) GC AT G C A T
Base content (bases) 448 527 293 155 299 228
Base content per 1 kb (bases) 459 541 301 159 307 234
Base content (%) 45.9% 54.1%
ND2 (size: 1046 bases) GC AT G C A T
Base content (bases) 476 570 342 134 293 277
Base content per 1 kb (bases) 455 545 327 128 280 265
Base content (%) 45.5% 54.5%
ND3 (size: 349 bases) GC AT G C A T
Base content (bases) 170 179 111 59 112 67
Base content per 1 kb (bases) 487 513 318 169 321 192
Base content (%) 48.7% 51.3%
ND4 (size: 1381 bases) GC AT G C A T
Base content (bases) 620 761 404 216 401 360
Base content per 1 kb (bases) 449 551 293 156 290 261
Base content (%) 44.9% 55.1%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 145 152 96 49 88 64
Base content per 1 kb (bases) 488 512 323 165 296 215
Base content (%) 48.8% 51.2%
ND5 (size: 1839 bases) GC AT G C A T
Base content (bases) 792 1047 542 250 535 512
Base content per 1 kb (bases) 431 569 295 136 291 278
Base content (%) 43.1% 56.9%
ND6 (size: 522 bases) GC AT G C A T
Base content (bases) 233 289 158 75 94 195
Base content per 1 kb (bases) 446 554 303 144 180 374
Base content (%) 44.6% 55.4%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (5.29%)
Alanine (Ala, A)
n = 19 (8.37%)
Serine (Ser, S)
n = 9 (3.96%)
Threonine (Thr, T)
n = 20 (8.81%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 15 (6.61%)
Leucine (Leu, L)
n = 56 (24.67%)
Isoleucine (Ile, I)
n = 16 (7.05%)
Methionine (Met, M)
n = 9 (3.96%)
Proline (Pro, P)
n = 17 (7.49%)
Phenylalanine (Phe, F)
n = 11 (4.85%)
Tyrosine (Tyr, Y)
n = 5 (2.2%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 8 (3.52%)
Glutamine (Gln, Q)
n = 9 (3.96%)
Histidine (His, H)
n = 4 (1.76%)
Lysine (Lys, K)
n = 1 (0.44%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 6 6 15 15 9 1 13 7 2 4 7 4 0 8 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 5 9 5 0 1 3 6 2 6 9 2 0 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 7 1 2 3 0 0 0 4 4 1 0 3 4 4 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 4 0 0 1 1 0 0 2 3 1 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
51 76 58 43
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
27 61 33 107
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
13 72 73 70
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPAPWFAILVFTWLVFLTIIPTKILAHTYPNEPTSQSTEKPKTEPWTWPWY*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 3 (5.45%)
Serine (Ser, S)
n = 2 (3.64%)
Threonine (Thr, T)
n = 8 (14.55%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 2 (3.64%)
Leucine (Leu, L)
n = 5 (9.09%)
Isoleucine (Ile, I)
n = 4 (7.27%)
Methionine (Met, M)
n = 1 (1.82%)
Proline (Pro, P)
n = 9 (16.36%)
Phenylalanine (Phe, F)
n = 3 (5.45%)
Tyrosine (Tyr, Y)
n = 2 (3.64%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 3 (5.45%)
Asparagine (Asn, N)
n = 2 (3.64%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 1 (1.82%)
Lysine (Lys, K)
n = 3 (5.45%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 1 0 0 1 2 1 1 2 0 0 2 0 0 3 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 1 1 1 0 0 0 0 0 5 3 1 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 5 0 0 1 0 0 0 1 0 2 0 0 1 1 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 1 2 0 0 3 0 0 0 0 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
8 16 19 13
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
6 21 14 15
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
4 15 22 15
COX1 (size: 1551 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 46 (8.91%)
Alanine (Ala, A)
n = 50 (9.69%)
Serine (Ser, S)
n = 28 (5.43%)
Threonine (Thr, T)
n = 35 (6.78%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 43 (8.33%)
Leucine (Leu, L)
n = 62 (12.02%)
Isoleucine (Ile, I)
n = 40 (7.75%)
Methionine (Met, M)
n = 23 (4.46%)
Proline (Pro, P)
n = 28 (5.43%)
Phenylalanine (Phe, F)
n = 42 (8.14%)
Tyrosine (Tyr, Y)
n = 18 (3.49%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 14 (2.71%)
Glutamic acid (Glu, E)
n = 11 (2.13%)
Asparagine (Asn, N)
n = 15 (2.91%)
Glutamine (Gln, Q)
n = 8 (1.55%)
Histidine (His, H)
n = 19 (3.68%)
Lysine (Lys, K)
n = 8 (1.55%)
Arginine (Arg, R)
n = 8 (1.55%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
27 13 12 22 8 16 4 11 5 3 15 5 18 5 21 21
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
11 0 1 18 20 10 2 9 16 14 7 14 7 6 1 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 11 2 9 6 7 1 1 4 9 9 1 1 5 10 7
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
12 5 6 5 9 8 0 2 0 4 2 0 0 1 0 16
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
164 113 126 114
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
77 136 94 210
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
46 153 144 174
COX2 (size: 691 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.93%)
Alanine (Ala, A)
n = 18 (7.86%)
Serine (Ser, S)
n = 15 (6.55%)
Threonine (Thr, T)
n = 10 (4.37%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 19 (8.3%)
Leucine (Leu, L)
n = 28 (12.23%)
Isoleucine (Ile, I)
n = 20 (8.73%)
Methionine (Met, M)
n = 11 (4.8%)
Proline (Pro, P)
n = 14 (6.11%)
Phenylalanine (Phe, F)
n = 9 (3.93%)
Tyrosine (Tyr, Y)
n = 9 (3.93%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 13 (5.68%)
Glutamic acid (Glu, E)
n = 15 (6.55%)
Asparagine (Asn, N)
n = 5 (2.18%)
Glutamine (Gln, Q)
n = 8 (3.49%)
Histidine (His, H)
n = 10 (4.37%)
Lysine (Lys, K)
n = 4 (1.75%)
Arginine (Arg, R)
n = 6 (2.62%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 5 8 13 2 8 1 4 4 4 8 6 3 2 4 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 2 3 7 7 1 1 2 5 1 3 6 5 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 4 0 1 5 6 0 1 2 5 4 0 0 1 4 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 13 2 3 10 3 1 4 1 1 0 0 0 0 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
74 62 53 41
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 54 64 87
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 72 76 67
COX3 (size: 785 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 22 (8.46%)
Alanine (Ala, A)
n = 24 (9.23%)
Serine (Ser, S)
n = 13 (5.0%)
Threonine (Thr, T)
n = 21 (8.08%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 14 (5.38%)
Leucine (Leu, L)
n = 31 (11.92%)
Isoleucine (Ile, I)
n = 16 (6.15%)
Methionine (Met, M)
n = 9 (3.46%)
Proline (Pro, P)
n = 13 (5.0%)
Phenylalanine (Phe, F)
n = 24 (9.23%)
Tyrosine (Tyr, Y)
n = 12 (4.62%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 10 (3.85%)
Asparagine (Asn, N)
n = 1 (0.38%)
Glutamine (Gln, Q)
n = 9 (3.46%)
Histidine (His, H)
n = 16 (6.15%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 6 7 12 4 10 3 1 8 1 4 6 4 0 10 14
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 1 3 12 8 1 7 8 4 3 7 5 0 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 12 0 3 3 3 1 0 3 2 10 0 1 0 1 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 8 2 1 4 2 0 1 1 2 1 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
75 72 52 62
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 68 55 94
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
16 97 81 67
CYTB (size: 1141 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 28 (7.39%)
Alanine (Ala, A)
n = 34 (8.97%)
Serine (Ser, S)
n = 22 (5.8%)
Threonine (Thr, T)
n = 21 (5.54%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 25 (6.6%)
Leucine (Leu, L)
n = 60 (15.83%)
Isoleucine (Ile, I)
n = 31 (8.18%)
Methionine (Met, M)
n = 8 (2.11%)
Proline (Pro, P)
n = 21 (5.54%)
Phenylalanine (Phe, F)
n = 31 (8.18%)
Tyrosine (Tyr, Y)
n = 14 (3.69%)
Tryptophan (Trp, W)
n = 13 (3.43%)
Aspartic acid (Asp, D)
n = 10 (2.64%)
Glutamic acid (Glu, E)
n = 5 (1.32%)
Asparagine (Asn, N)
n = 19 (5.01%)
Glutamine (Gln, Q)
n = 6 (1.58%)
Histidine (His, H)
n = 12 (3.17%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 14 6 14 13 13 5 13 6 0 12 7 6 0 12 19
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 2 4 15 14 1 7 11 7 3 8 7 5 1 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 6 0 6 8 5 2 0 1 5 9 3 2 4 15 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 5 0 4 6 8 1 1 1 5 1 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
102 92 89 97
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
53 97 75 155
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
21 148 109 102
ND1 (size: 975 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.56%)
Alanine (Ala, A)
n = 36 (11.11%)
Serine (Ser, S)
n = 20 (6.17%)
Threonine (Thr, T)
n = 18 (5.56%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 20 (6.17%)
Leucine (Leu, L)
n = 64 (19.75%)
Isoleucine (Ile, I)
n = 26 (8.02%)
Methionine (Met, M)
n = 8 (2.47%)
Proline (Pro, P)
n = 24 (7.41%)
Phenylalanine (Phe, F)
n = 18 (5.56%)
Tyrosine (Tyr, Y)
n = 11 (3.4%)
Tryptophan (Trp, W)
n = 8 (2.47%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.4%)
Asparagine (Asn, N)
n = 12 (3.7%)
Glutamine (Gln, Q)
n = 7 (2.16%)
Histidine (His, H)
n = 4 (1.23%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 15 6 16 10 17 9 8 6 1 7 8 3 2 12 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 8 19 8 1 4 4 4 6 16 5 3 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 6 0 5 6 6 0 0 3 6 5 0 4 6 6 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 9 2 2 2 7 0 1 0 6 1 0 0 0 1 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
89 95 74 67
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
37 95 57 136
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
29 103 97 96
ND2 (size: 1046 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.19%)
Alanine (Ala, A)
n = 39 (11.24%)
Serine (Ser, S)
n = 24 (6.92%)
Threonine (Thr, T)
n = 41 (11.82%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 10 (2.88%)
Leucine (Leu, L)
n = 82 (23.63%)
Isoleucine (Ile, I)
n = 18 (5.19%)
Methionine (Met, M)
n = 13 (3.75%)
Proline (Pro, P)
n = 21 (6.05%)
Phenylalanine (Phe, F)
n = 12 (3.46%)
Tyrosine (Tyr, Y)
n = 7 (2.02%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 3 (0.86%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 9 (2.59%)
Glutamine (Gln, Q)
n = 16 (4.61%)
Histidine (His, H)
n = 7 (2.02%)
Lysine (Lys, K)
n = 9 (2.59%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 5 10 27 19 20 4 11 15 1 5 2 2 1 8 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 6 19 13 1 4 4 8 2 4 8 5 4 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
21 10 2 1 9 10 0 2 2 5 2 1 1 7 2 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 3 1 1 2 7 2 1 0 3 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
74 118 94 62
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
37 121 55 135
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
23 103 127 95
ND3 (size: 1046 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.19%)
Alanine (Ala, A)
n = 39 (11.24%)
Serine (Ser, S)
n = 24 (6.92%)
Threonine (Thr, T)
n = 41 (11.82%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 10 (2.88%)
Leucine (Leu, L)
n = 82 (23.63%)
Isoleucine (Ile, I)
n = 18 (5.19%)
Methionine (Met, M)
n = 13 (3.75%)
Proline (Pro, P)
n = 21 (6.05%)
Phenylalanine (Phe, F)
n = 12 (3.46%)
Tyrosine (Tyr, Y)
n = 7 (2.02%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 3 (0.86%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 9 (2.59%)
Glutamine (Gln, Q)
n = 16 (4.61%)
Histidine (His, H)
n = 7 (2.02%)
Lysine (Lys, K)
n = 9 (2.59%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 5 10 27 19 20 4 11 15 1 5 2 2 1 8 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 6 19 13 1 4 4 8 2 4 8 5 4 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
21 10 2 1 9 10 0 2 2 5 2 1 1 7 2 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 3 1 1 2 7 2 1 0 3 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
74 118 94 62
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
37 121 55 135
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
23 103 127 95
ND4 (size: 1381 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 27 (5.88%)
Alanine (Ala, A)
n = 40 (8.71%)
Serine (Ser, S)
n = 30 (6.54%)
Threonine (Thr, T)
n = 39 (8.5%)
Cysteine (Cys, C)
n = 4 (0.87%)
Valine (Val, V)
n = 17 (3.7%)
Leucine (Leu, L)
n = 98 (21.35%)
Isoleucine (Ile, I)
n = 32 (6.97%)
Methionine (Met, M)
n = 27 (5.88%)
Proline (Pro, P)
n = 26 (5.66%)
Phenylalanine (Phe, F)
n = 16 (3.49%)
Tyrosine (Tyr, Y)
n = 14 (3.05%)
Tryptophan (Trp, W)
n = 19 (4.14%)
Aspartic acid (Asp, D)
n = 6 (1.31%)
Glutamic acid (Glu, E)
n = 11 (2.4%)
Asparagine (Asn, N)
n = 11 (2.4%)
Glutamine (Gln, Q)
n = 11 (2.4%)
Histidine (His, H)
n = 11 (2.4%)
Lysine (Lys, K)
n = 10 (2.18%)
Arginine (Arg, R)
n = 11 (2.4%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
23 9 20 30 17 30 9 12 10 1 8 2 6 1 9 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 2 2 8 18 12 2 5 10 5 7 9 12 4 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
18 16 2 5 6 6 2 4 7 7 7 4 0 5 6 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 6 5 2 4 9 1 2 3 5 1 0 0 0 0 15
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
101 145 130 84
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
72 124 74 190
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
43 135 156 126
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 5 (5.1%)
Alanine (Ala, A)
n = 14 (14.29%)
Serine (Ser, S)
n = 9 (9.18%)
Threonine (Thr, T)
n = 8 (8.16%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 2 (2.04%)
Leucine (Leu, L)
n = 24 (24.49%)
Isoleucine (Ile, I)
n = 2 (2.04%)
Methionine (Met, M)
n = 4 (4.08%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 7 (7.14%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 2 (2.04%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 3 (3.06%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 3 (3.06%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 1 2 7 4 9 1 0 2 1 1 0 1 0 4 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 2 3 6 4 1 1 1 1 2 1 1 0 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 2 1 1 3 4 0 1 0 0 0 0 3 0 3 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 2 0 0 2 0 0 1 0 2 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
25 33 18 23
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
13 32 15 39
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
11 31 31 26
ND5 (size: 1839 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 30 (4.9%)
Alanine (Ala, A)
n = 53 (8.66%)
Serine (Ser, S)
n = 43 (7.03%)
Threonine (Thr, T)
n = 62 (10.13%)
Cysteine (Cys, C)
n = 6 (0.98%)
Valine (Val, V)
n = 33 (5.39%)
Leucine (Leu, L)
n = 100 (16.34%)
Isoleucine (Ile, I)
n = 44 (7.19%)
Methionine (Met, M)
n = 24 (3.92%)
Proline (Pro, P)
n = 31 (5.07%)
Phenylalanine (Phe, F)
n = 44 (7.19%)
Tyrosine (Tyr, Y)
n = 11 (1.8%)
Tryptophan (Trp, W)
n = 14 (2.29%)
Aspartic acid (Asp, D)
n = 13 (2.12%)
Glutamic acid (Glu, E)
n = 12 (1.96%)
Asparagine (Asn, N)
n = 28 (4.58%)
Glutamine (Gln, Q)
n = 19 (3.1%)
Histidine (His, H)
n = 15 (2.45%)
Lysine (Lys, K)
n = 20 (3.27%)
Arginine (Arg, R)
n = 10 (1.63%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
33 11 18 26 22 28 6 17 17 2 12 11 9 1 18 26
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 3 3 12 22 18 1 7 10 11 2 6 16 7 2 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
24 23 6 7 14 7 1 3 11 5 6 2 1 11 17 9
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 10 2 5 8 18 2 1 3 6 0 0 0 0 1 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
141 157 192 123
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
74 175 119 245
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
35 210 201 167
ND6 (size: 522 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (13.87%)
Alanine (Ala, A)
n = 17 (9.83%)
Serine (Ser, S)
n = 14 (8.09%)
Threonine (Thr, T)
n = 5 (2.89%)
Cysteine (Cys, C)
n = 1 (0.58%)
Valine (Val, V)
n = 23 (13.29%)
Leucine (Leu, L)
n = 28 (16.18%)
Isoleucine (Ile, I)
n = 7 (4.05%)
Methionine (Met, M)
n = 7 (4.05%)
Proline (Pro, P)
n = 7 (4.05%)
Phenylalanine (Phe, F)
n = 10 (5.78%)
Tyrosine (Tyr, Y)
n = 9 (5.2%)
Tryptophan (Trp, W)
n = 5 (2.89%)
Aspartic acid (Asp, D)
n = 2 (1.16%)
Glutamic acid (Glu, E)
n = 6 (3.47%)
Asparagine (Asn, N)
n = 1 (0.58%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 1 (0.58%)
Lysine (Lys, K)
n = 1 (0.58%)
Arginine (Arg, R)
n = 5 (2.89%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 0 2 8 0 3 1 12 0 0 8 3 7 5 10 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 1 0 4 3 4 6 1 2 7 14 7 0 0 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 1 1 5 0 3 1 5 0 7 2 3 4 1 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 2 4 2 0 0 1 1 0 3 1 0 0 1 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
72 25 26 51
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
40 38 21 75
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
46 12 47 69
Total protein-coding genes (size: 11429 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 245 (6.44%)
Alanine (Ala, A)
n = 358 (9.41%)
Serine (Ser, S)
n = 235 (6.17%)
Threonine (Thr, T)
n = 295 (7.75%)
Cysteine (Cys, C)
n = 23 (0.6%)
Valine (Val, V)
n = 230 (6.04%)
Leucine (Leu, L)
n = 667 (17.52%)
Isoleucine (Ile, I)
n = 261 (6.86%)
Methionine (Met, M)
n = 147 (3.86%)
Proline (Pro, P)
n = 221 (5.81%)
Phenylalanine (Phe, F)
n = 235 (6.17%)
Tyrosine (Tyr, Y)
n = 114 (3.0%)
Tryptophan (Trp, W)
n = 120 (3.15%)
Aspartic acid (Asp, D)
n = 77 (2.02%)
Glutamic acid (Glu, E)
n = 100 (2.63%)
Asparagine (Asn, N)
n = 115 (3.02%)
Glutamine (Gln, Q)
n = 101 (2.65%)
Histidine (His, H)
n = 105 (2.76%)
Lysine (Lys, K)
n = 75 (1.97%)
Arginine (Arg, R)
n = 76 (2.0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
173 88 99 198 119 171 48 110 84 17 88 61 64 17 124 111
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
48 9 14 77 158 105 18 47 77 72 49 87 83 40 11 56
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
120 104 15 47 67 58 8 17 38 56 58 14 21 45 70 39
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
66 71 29 25 52 67 8 15 13 40 8 0 0 5 2 106
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
1010 1039 948 810
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
519 1054 694 1540
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
313 1195 1196 1103 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​P​e​r​c​a​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ f​l​u​v​i​a​t​i​l​i​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.