Viewing data for Rana nigromaculata


Scientific name Rana nigromaculata
Common name Black-spotted frog
Maximum lifespan 15.00 years (Rana nigromaculata@AnAge)

Total mtDNA (size: 17804 bases) GC AT G C A T
Base content (bases) 7668 10136 4995 2673 5272 4864
Base content per 1 kb (bases) 431 569 281 150 296 273
Base content (%) 43.1% 56.9%
Total protein-coding genes (size: 11261 bases) GC AT G C A T
Base content (bases) 5010 6251 3438 1572 3365 2886
Base content per 1 kb (bases) 445 555 305 140 299 256
Base content (%) 44.5% 55.5%
D-loop (size: 2425 bases) GC AT G C A T
Base content (bases) 839 1586 524 315 883 703
Base content per 1 kb (bases) 346 654 216 130 364 290
Base content (%) 34.6% 65.4%
Total tRNA-coding genes (size: 1532 bases) GC AT G C A T
Base content (bases) 679 853 384 295 396 457
Base content per 1 kb (bases) 443 557 251 193 258 298
Base content (%) 44.3% 55.7%
Total rRNA-coding genes (size: 2521 bases) GC AT G C A T
Base content (bases) 1115 1406 633 482 606 800
Base content per 1 kb (bases) 442 558 251 191 240 317
Base content (%) 44.2% 55.8%
12S rRNA gene (size: 933 bases) GC AT G C A T
Base content (bases) 443 490 249 194 212 278
Base content per 1 kb (bases) 475 525 267 208 227 298
Base content (%) 47.5% 52.5%
16S rRNA gene (size: 1588 bases) GC AT G C A T
Base content (bases) 672 916 384 288 394 522
Base content per 1 kb (bases) 423 577 242 181 248 329
Base content (%) 42.3% 57.7%

ATP6 (size: 682 bases) GC AT G C A T
Base content (bases) 301 381 223 78 211 170
Base content per 1 kb (bases) 441 559 327 114 309 249
Base content (%) 44.1% 55.9%
ATP8 (size: 165 bases) GC AT G C A T
Base content (bases) 63 102 47 16 44 58
Base content per 1 kb (bases) 382 618 285 97 267 352
Base content (%) 38.2% 61.8%
COX1 (size: 1539 bases) GC AT G C A T
Base content (bases) 685 854 419 266 477 377
Base content per 1 kb (bases) 445 555 272 173 310 245
Base content (%) 44.5% 55.5%
COX2 (size: 688 bases) GC AT G C A T
Base content (bases) 291 397 186 105 193 204
Base content per 1 kb (bases) 423 577 270 153 281 297
Base content (%) 42.3% 57.7%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 376 408 245 131 225 183
Base content per 1 kb (bases) 480 520 313 167 287 233
Base content (%) 48.0% 52.0%
CYTB (size: 1143 bases) GC AT G C A T
Base content (bases) 547 596 381 166 328 268
Base content per 1 kb (bases) 479 521 333 145 287 234
Base content (%) 47.9% 52.1%
ND1 (size: 961 bases) GC AT G C A T
Base content (bases) 437 524 316 121 304 220
Base content per 1 kb (bases) 455 545 329 126 316 229
Base content (%) 45.5% 54.5%
ND2 (size: 1038 bases) GC AT G C A T
Base content (bases) 445 593 335 110 313 280
Base content per 1 kb (bases) 429 571 323 106 302 270
Base content (%) 42.9% 57.1%
ND3 (size: 340 bases) GC AT G C A T
Base content (bases) 160 180 112 48 108 72
Base content per 1 kb (bases) 471 529 329 141 318 212
Base content (%) 47.1% 52.9%
ND4 (size: 1360 bases) GC AT G C A T
Base content (bases) 576 784 401 175 432 352
Base content per 1 kb (bases) 424 576 295 129 318 259
Base content (%) 42.4% 57.6%
ND4L (size: 285 bases) GC AT G C A T
Base content (bases) 124 161 81 43 91 70
Base content per 1 kb (bases) 435 565 284 151 319 246
Base content (%) 43.5% 56.5%
ND5 (size: 1795 bases) GC AT G C A T
Base content (bases) 771 1024 523 248 557 467
Base content per 1 kb (bases) 430 570 291 138 310 260
Base content (%) 43.0% 57.0%
ND6 (size: 501 bases) GC AT G C A T
Base content (bases) 240 261 172 68 88 173
Base content per 1 kb (bases) 479 521 343 136 176 345
Base content (%) 47.9% 52.1%

ATP6 (size: 682 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 7 (3.1%)
Alanine (Ala, A)
n = 18 (7.96%)
Serine (Ser, S)
n = 18 (7.96%)
Threonine (Thr, T)
n = 23 (10.18%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 13 (5.75%)
Leucine (Leu, L)
n = 53 (23.45%)
Isoleucine (Ile, I)
n = 15 (6.64%)
Methionine (Met, M)
n = 6 (2.65%)
Proline (Pro, P)
n = 15 (6.64%)
Phenylalanine (Phe, F)
n = 17 (7.52%)
Tyrosine (Tyr, Y)
n = 3 (1.33%)
Tryptophan (Trp, W)
n = 5 (2.21%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.77%)
Asparagine (Asn, N)
n = 9 (3.98%)
Glutamine (Gln, Q)
n = 7 (3.1%)
Histidine (His, H)
n = 5 (2.21%)
Lysine (Lys, K)
n = 3 (1.33%)
Arginine (Arg, R)
n = 5 (2.21%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 6 3 13 7 16 6 11 6 1 3 7 3 0 9 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 1 11 5 1 2 2 3 0 1 4 9 1 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 5 1 3 7 4 0 0 4 3 0 0 0 3 6 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 4 0 0 1 2 1 0 3 2 0 0 0 0 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
43 74 60 50
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
21 70 32 104
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 79 78 56
ATP8 (size: 165 bases)
Amino acid sequence: MPQLNPSPWLFYLFLAWLILTFLAPSKILGHTNLNEPNPKGTKTTNFTWTWPWQ*
Amino acid frequencies:
Glycine (Gly, G)
n = 2 (3.7%)
Alanine (Ala, A)
n = 2 (3.7%)
Serine (Ser, S)
n = 2 (3.7%)
Threonine (Thr, T)
n = 7 (12.96%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 0 (0%)
Leucine (Leu, L)
n = 9 (16.67%)
Isoleucine (Ile, I)
n = 2 (3.7%)
Methionine (Met, M)
n = 1 (1.85%)
Proline (Pro, P)
n = 7 (12.96%)
Phenylalanine (Phe, F)
n = 4 (7.41%)
Tyrosine (Tyr, Y)
n = 1 (1.85%)
Tryptophan (Trp, W)
n = 5 (9.26%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 1 (1.85%)
Asparagine (Asn, N)
n = 5 (9.26%)
Glutamine (Gln, Q)
n = 2 (3.7%)
Histidine (His, H)
n = 1 (1.85%)
Lysine (Lys, K)
n = 3 (5.56%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 1 0 1 3 2 0 3 2 0 0 0 0 0 3 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 0 0 2 0 1 1 0 0 2 2 3 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 3 0 0 0 0 0 1 1 1 0 0 0 2 3 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 1 0 0 0 3 0 0 0 0 0 0 0 0 1 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
5 16 20 14
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
9 16 14 16
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
2 15 24 14
COX1 (size: 1539 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 44 (8.59%)
Alanine (Ala, A)
n = 41 (8.01%)
Serine (Ser, S)
n = 32 (6.25%)
Threonine (Thr, T)
n = 39 (7.62%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 39 (7.62%)
Leucine (Leu, L)
n = 64 (12.5%)
Isoleucine (Ile, I)
n = 39 (7.62%)
Methionine (Met, M)
n = 25 (4.88%)
Proline (Pro, P)
n = 27 (5.27%)
Phenylalanine (Phe, F)
n = 44 (8.59%)
Tyrosine (Tyr, Y)
n = 18 (3.52%)
Tryptophan (Trp, W)
n = 17 (3.32%)
Aspartic acid (Asp, D)
n = 14 (2.73%)
Glutamic acid (Glu, E)
n = 11 (2.15%)
Asparagine (Asn, N)
n = 17 (3.32%)
Glutamine (Gln, Q)
n = 6 (1.17%)
Histidine (His, H)
n = 19 (3.71%)
Lysine (Lys, K)
n = 8 (1.56%)
Arginine (Arg, R)
n = 8 (1.56%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
21 18 15 18 9 15 11 11 5 1 12 10 16 1 20 24
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
10 0 0 10 22 7 2 6 14 15 9 9 8 8 2 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 18 0 9 9 7 3 0 4 8 10 3 0 10 7 7
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
12 10 1 5 9 7 1 3 3 2 0 0 0 1 0 14
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
149 113 132 119
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
73 135 94 211
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
44 171 151 147
COX2 (size: 688 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.95%)
Alanine (Ala, A)
n = 19 (8.33%)
Serine (Ser, S)
n = 17 (7.46%)
Threonine (Thr, T)
n = 14 (6.14%)
Cysteine (Cys, C)
n = 3 (1.32%)
Valine (Val, V)
n = 14 (6.14%)
Leucine (Leu, L)
n = 26 (11.4%)
Isoleucine (Ile, I)
n = 24 (10.53%)
Methionine (Met, M)
n = 12 (5.26%)
Proline (Pro, P)
n = 14 (6.14%)
Phenylalanine (Phe, F)
n = 8 (3.51%)
Tyrosine (Tyr, Y)
n = 8 (3.51%)
Tryptophan (Trp, W)
n = 5 (2.19%)
Aspartic acid (Asp, D)
n = 13 (5.7%)
Glutamic acid (Glu, E)
n = 11 (4.82%)
Asparagine (Asn, N)
n = 8 (3.51%)
Glutamine (Gln, Q)
n = 7 (3.07%)
Histidine (His, H)
n = 9 (3.95%)
Lysine (Lys, K)
n = 4 (1.75%)
Arginine (Arg, R)
n = 4 (1.75%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
20 4 6 9 5 6 0 6 6 1 4 3 7 0 2 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 1 2 4 8 7 0 2 4 3 0 2 4 8 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 5 0 2 5 3 1 2 4 4 4 1 0 5 3 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 9 2 2 11 4 0 1 0 2 1 0 0 0 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
66 54 68 41
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
27 58 60 84
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
12 74 76 67
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 20 (7.69%)
Alanine (Ala, A)
n = 27 (10.38%)
Serine (Ser, S)
n = 11 (4.23%)
Threonine (Thr, T)
n = 22 (8.46%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 17 (6.54%)
Leucine (Leu, L)
n = 28 (10.77%)
Isoleucine (Ile, I)
n = 15 (5.77%)
Methionine (Met, M)
n = 8 (3.08%)
Proline (Pro, P)
n = 13 (5.0%)
Phenylalanine (Phe, F)
n = 29 (11.15%)
Tyrosine (Tyr, Y)
n = 10 (3.85%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 4 (1.54%)
Glutamine (Gln, Q)
n = 9 (3.46%)
Histidine (His, H)
n = 14 (5.38%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 3 4 5 11 8 1 2 9 0 4 6 7 0 13 16
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 1 11 12 4 0 2 12 2 4 2 5 6 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
13 8 0 1 1 6 0 0 3 4 6 1 1 2 2 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 7 1 1 4 2 0 1 3 1 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
77 66 54 64
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
42 70 52 97
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
12 109 77 63
CYTB (size: 1143 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 28 (7.37%)
Alanine (Ala, A)
n = 32 (8.42%)
Serine (Ser, S)
n = 25 (6.58%)
Threonine (Thr, T)
n = 23 (6.05%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 16 (4.21%)
Leucine (Leu, L)
n = 58 (15.26%)
Isoleucine (Ile, I)
n = 38 (10.0%)
Methionine (Met, M)
n = 9 (2.37%)
Proline (Pro, P)
n = 23 (6.05%)
Phenylalanine (Phe, F)
n = 32 (8.42%)
Tyrosine (Tyr, Y)
n = 13 (3.42%)
Tryptophan (Trp, W)
n = 11 (2.89%)
Aspartic acid (Asp, D)
n = 10 (2.63%)
Glutamic acid (Glu, E)
n = 4 (1.05%)
Asparagine (Asn, N)
n = 19 (5.0%)
Glutamine (Gln, Q)
n = 6 (1.58%)
Histidine (His, H)
n = 11 (2.89%)
Lysine (Lys, K)
n = 11 (2.89%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
18 20 3 13 20 11 8 5 6 0 4 10 1 1 15 17
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 1 2 1 23 8 0 5 14 8 1 4 9 10 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 11 0 8 10 4 2 1 0 3 10 1 1 6 13 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 3 1 2 8 8 3 1 3 3 1 0 0 1 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
90 100 101 90
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
51 102 75 153
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
25 179 92 85
ND1 (size: 961 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 15 (4.7%)
Alanine (Ala, A)
n = 28 (8.78%)
Serine (Ser, S)
n = 26 (8.15%)
Threonine (Thr, T)
n = 21 (6.58%)
Cysteine (Cys, C)
n = 2 (0.63%)
Valine (Val, V)
n = 16 (5.02%)
Leucine (Leu, L)
n = 63 (19.75%)
Isoleucine (Ile, I)
n = 23 (7.21%)
Methionine (Met, M)
n = 10 (3.13%)
Proline (Pro, P)
n = 23 (7.21%)
Phenylalanine (Phe, F)
n = 25 (7.84%)
Tyrosine (Tyr, Y)
n = 10 (3.13%)
Tryptophan (Trp, W)
n = 7 (2.19%)
Aspartic acid (Asp, D)
n = 4 (1.25%)
Glutamic acid (Glu, E)
n = 9 (2.82%)
Asparagine (Asn, N)
n = 9 (2.82%)
Glutamine (Gln, Q)
n = 9 (2.82%)
Histidine (His, H)
n = 5 (1.57%)
Lysine (Lys, K)
n = 7 (2.19%)
Arginine (Arg, R)
n = 8 (2.51%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 10 6 13 23 14 3 10 7 2 5 8 3 0 19 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 2 5 17 5 1 3 7 3 2 6 7 9 1 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 6 0 6 12 5 1 0 2 3 7 0 0 6 3 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 9 0 3 1 7 0 1 2 4 1 0 0 0 0 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
72 98 72 78
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
34 96 53 137
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 122 95 88
ND2 (size: 1038 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 16 (4.64%)
Alanine (Ala, A)
n = 27 (7.83%)
Serine (Ser, S)
n = 33 (9.57%)
Threonine (Thr, T)
n = 40 (11.59%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 9 (2.61%)
Leucine (Leu, L)
n = 72 (20.87%)
Isoleucine (Ile, I)
n = 35 (10.14%)
Methionine (Met, M)
n = 14 (4.06%)
Proline (Pro, P)
n = 20 (5.8%)
Phenylalanine (Phe, F)
n = 16 (4.64%)
Tyrosine (Tyr, Y)
n = 5 (1.45%)
Tryptophan (Trp, W)
n = 10 (2.9%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 6 (1.74%)
Asparagine (Asn, N)
n = 12 (3.48%)
Glutamine (Gln, Q)
n = 7 (2.03%)
Histidine (His, H)
n = 7 (2.03%)
Lysine (Lys, K)
n = 11 (3.19%)
Arginine (Arg, R)
n = 4 (1.16%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
28 7 11 17 22 19 5 8 7 0 5 3 1 0 8 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 5 16 6 0 4 7 3 2 3 9 7 1 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
15 15 0 8 10 11 0 0 4 3 2 3 1 4 8 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 6 0 1 0 10 1 1 0 3 0 0 0 0 1 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
59 101 116 70
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
34 116 50 146
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
17 118 114 97
ND3 (size: 1038 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 16 (4.64%)
Alanine (Ala, A)
n = 27 (7.83%)
Serine (Ser, S)
n = 33 (9.57%)
Threonine (Thr, T)
n = 40 (11.59%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 9 (2.61%)
Leucine (Leu, L)
n = 72 (20.87%)
Isoleucine (Ile, I)
n = 35 (10.14%)
Methionine (Met, M)
n = 14 (4.06%)
Proline (Pro, P)
n = 20 (5.8%)
Phenylalanine (Phe, F)
n = 16 (4.64%)
Tyrosine (Tyr, Y)
n = 5 (1.45%)
Tryptophan (Trp, W)
n = 10 (2.9%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 6 (1.74%)
Asparagine (Asn, N)
n = 12 (3.48%)
Glutamine (Gln, Q)
n = 7 (2.03%)
Histidine (His, H)
n = 7 (2.03%)
Lysine (Lys, K)
n = 11 (3.19%)
Arginine (Arg, R)
n = 4 (1.16%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
28 7 11 17 22 19 5 8 7 0 5 3 1 0 8 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 5 16 6 0 4 7 3 2 3 9 7 1 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
15 15 0 8 10 11 0 0 4 3 2 3 1 4 8 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 6 0 1 0 10 1 1 0 3 0 0 0 0 1 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
59 101 116 70
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
34 116 50 146
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
17 118 114 97
ND4 (size: 1360 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 20 (4.42%)
Alanine (Ala, A)
n = 43 (9.51%)
Serine (Ser, S)
n = 35 (7.74%)
Threonine (Thr, T)
n = 37 (8.19%)
Cysteine (Cys, C)
n = 4 (0.88%)
Valine (Val, V)
n = 15 (3.32%)
Leucine (Leu, L)
n = 86 (19.03%)
Isoleucine (Ile, I)
n = 38 (8.41%)
Methionine (Met, M)
n = 20 (4.42%)
Proline (Pro, P)
n = 21 (4.65%)
Phenylalanine (Phe, F)
n = 34 (7.52%)
Tyrosine (Tyr, Y)
n = 13 (2.88%)
Tryptophan (Trp, W)
n = 13 (2.88%)
Aspartic acid (Asp, D)
n = 5 (1.11%)
Glutamic acid (Glu, E)
n = 10 (2.21%)
Asparagine (Asn, N)
n = 15 (3.32%)
Glutamine (Gln, Q)
n = 12 (2.65%)
Histidine (His, H)
n = 10 (2.21%)
Lysine (Lys, K)
n = 10 (2.21%)
Arginine (Arg, R)
n = 12 (2.65%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
30 8 18 17 27 22 5 13 11 1 4 5 5 1 23 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 2 2 8 23 11 1 3 9 4 4 3 6 10 2 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
15 13 2 10 9 8 2 1 5 9 4 2 2 5 10 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 10 0 2 3 9 1 1 3 6 2 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
93 126 126 108
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
55 130 75 193
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
27 145 151 130
ND4L (size: 285 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 6 (6.38%)
Alanine (Ala, A)
n = 7 (7.45%)
Serine (Ser, S)
n = 7 (7.45%)
Threonine (Thr, T)
n = 6 (6.38%)
Cysteine (Cys, C)
n = 3 (3.19%)
Valine (Val, V)
n = 4 (4.26%)
Leucine (Leu, L)
n = 22 (23.4%)
Isoleucine (Ile, I)
n = 4 (4.26%)
Methionine (Met, M)
n = 11 (11.7%)
Proline (Pro, P)
n = 3 (3.19%)
Phenylalanine (Phe, F)
n = 5 (5.32%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 1 (1.06%)
Aspartic acid (Asp, D)
n = 1 (1.06%)
Glutamic acid (Glu, E)
n = 2 (2.13%)
Asparagine (Asn, N)
n = 4 (4.26%)
Glutamine (Gln, Q)
n = 2 (2.13%)
Histidine (His, H)
n = 3 (3.19%)
Lysine (Lys, K)
n = 1 (1.06%)
Arginine (Arg, R)
n = 2 (2.13%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 0 7 5 7 2 3 4 2 0 1 0 2 1 3 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 2 0 6 1 0 2 1 3 0 0 3 0 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 2 0 2 2 2 0 0 1 0 0 1 1 3 1 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 2 0 1 0 1 0 0 2 0 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
20 27 27 21
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
13 22 14 46
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
10 32 29 24
ND5 (size: 1795 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 29 (4.86%)
Alanine (Ala, A)
n = 60 (10.05%)
Serine (Ser, S)
n = 47 (7.87%)
Threonine (Thr, T)
n = 47 (7.87%)
Cysteine (Cys, C)
n = 8 (1.34%)
Valine (Val, V)
n = 29 (4.86%)
Leucine (Leu, L)
n = 91 (15.24%)
Isoleucine (Ile, I)
n = 54 (9.05%)
Methionine (Met, M)
n = 28 (4.69%)
Proline (Pro, P)
n = 25 (4.19%)
Phenylalanine (Phe, F)
n = 39 (6.53%)
Tyrosine (Tyr, Y)
n = 19 (3.18%)
Tryptophan (Trp, W)
n = 9 (1.51%)
Aspartic acid (Asp, D)
n = 16 (2.68%)
Glutamic acid (Glu, E)
n = 10 (1.68%)
Asparagine (Asn, N)
n = 22 (3.69%)
Glutamine (Gln, Q)
n = 17 (2.85%)
Histidine (His, H)
n = 15 (2.51%)
Lysine (Lys, K)
n = 22 (3.69%)
Arginine (Arg, R)
n = 11 (1.84%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
40 14 21 26 24 18 11 10 14 3 17 5 6 1 21 18
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 2 6 11 33 15 1 3 17 5 4 6 12 6 1 11
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
18 18 0 10 17 9 0 5 6 12 7 2 2 12 10 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 8 2 8 8 20 2 2 4 5 0 0 0 0 0 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
144 147 184 123
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
68 168 121 241
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
36 208 162 192
ND6 (size: 501 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (15.66%)
Alanine (Ala, A)
n = 14 (8.43%)
Serine (Ser, S)
n = 9 (5.42%)
Threonine (Thr, T)
n = 2 (1.2%)
Cysteine (Cys, C)
n = 4 (2.41%)
Valine (Val, V)
n = 23 (13.86%)
Leucine (Leu, L)
n = 30 (18.07%)
Isoleucine (Ile, I)
n = 4 (2.41%)
Methionine (Met, M)
n = 6 (3.61%)
Proline (Pro, P)
n = 5 (3.01%)
Phenylalanine (Phe, F)
n = 7 (4.22%)
Tyrosine (Tyr, Y)
n = 8 (4.82%)
Tryptophan (Trp, W)
n = 7 (4.22%)
Aspartic acid (Asp, D)
n = 2 (1.2%)
Glutamic acid (Glu, E)
n = 6 (3.61%)
Asparagine (Asn, N)
n = 2 (1.2%)
Glutamine (Gln, Q)
n = 2 (1.2%)
Histidine (His, H)
n = 2 (1.2%)
Lysine (Lys, K)
n = 4 (2.41%)
Arginine (Arg, R)
n = 3 (1.81%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 3 2 5 1 1 2 14 1 1 9 0 7 7 6 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 3 1 4 4 1 5 4 0 6 16 3 1 0 1 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 0 0 4 1 1 0 2 1 3 5 4 7 1 1 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 1 5 2 0 1 3 0 0 1 2 1 0 0 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
71 21 22 53
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 27 26 70
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
57 20 40 50
Total protein-coding genes (size: 11281 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 227 (6.04%)
Alanine (Ala, A)
n = 326 (8.68%)
Serine (Ser, S)
n = 270 (7.19%)
Threonine (Thr, T)
n = 286 (7.61%)
Cysteine (Cys, C)
n = 30 (0.8%)
Valine (Val, V)
n = 200 (5.32%)
Leucine (Leu, L)
n = 626 (16.66%)
Isoleucine (Ile, I)
n = 304 (8.09%)
Methionine (Met, M)
n = 153 (4.07%)
Proline (Pro, P)
n = 205 (5.46%)
Phenylalanine (Phe, F)
n = 269 (7.16%)
Tyrosine (Tyr, Y)
n = 111 (2.95%)
Tryptophan (Trp, W)
n = 107 (2.85%)
Aspartic acid (Asp, D)
n = 76 (2.02%)
Glutamic acid (Glu, E)
n = 88 (2.34%)
Asparagine (Asn, N)
n = 126 (3.35%)
Glutamine (Gln, Q)
n = 88 (2.34%)
Histidine (His, H)
n = 101 (2.69%)
Lysine (Lys, K)
n = 87 (2.32%)
Arginine (Arg, R)
n = 72 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
206 98 98 148 167 140 58 98 78 10 70 58 60 12 144 125
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
55 11 19 61 182 72 11 37 91 57 42 42 72 82 9 64
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
115 104 3 65 87 61 9 12 36 53 58 19 15 59 67 29
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
72 75 13 28 48 75 12 11 24 30 7 1 0 3 2 88
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
917 979 1005 857
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
485 1039 682 1552
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
277 1319 1122 1040 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​R​a​n​a​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ n​i​g​r​o​m​a​c​u​l​a​t​a​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.