Viewing data for Oncorhynchus tshawytscha


Scientific name Oncorhynchus tshawytscha
Common name Chinook salmon
Maximum lifespan 9.00 years (Oncorhynchus tshawytscha@AnAge)

Total mtDNA (size: 16644 bases) GC AT G C A T
Base content (bases) 7600 9043 4803 2797 4355 4688
Base content per 1 kb (bases) 457 543 289 168 262 282
Base content (%) 45.7% 54.3%
Total protein-coding genes (size: 11412 bases) GC AT G C A T
Base content (bases) 5195 6216 3470 1725 3129 3087
Base content per 1 kb (bases) 455 545 304 151 274 271
Base content (%) 45.5% 54.5%
D-loop (size: 986 bases) GC AT G C A T
Base content (bases) 390 596 232 158 306 290
Base content per 1 kb (bases) 396 604 235 160 310 294
Base content (%) 39.6% 60.4%
Total tRNA-coding genes (size: 1554 bases) GC AT G C A T
Base content (bases) 707 847 399 308 384 463
Base content per 1 kb (bases) 455 545 257 198 247 298
Base content (%) 45.5% 54.5%
Total rRNA-coding genes (size: 2630 bases) GC AT G C A T
Base content (bases) 1272 1358 683 589 522 836
Base content per 1 kb (bases) 484 516 260 224 198 318
Base content (%) 48.4% 51.6%
12S rRNA gene (size: 947 bases) GC AT G C A T
Base content (bases) 472 475 257 215 192 283
Base content per 1 kb (bases) 498 502 271 227 203 299
Base content (%) 49.8% 50.2%
16S rRNA gene (size: 1683 bases) GC AT G C A T
Base content (bases) 800 883 426 374 330 553
Base content per 1 kb (bases) 475 525 253 222 196 329
Base content (%) 47.5% 52.5%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 300 384 215 85 199 185
Base content per 1 kb (bases) 439 561 314 124 291 270
Base content (%) 43.9% 56.1%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 76 92 55 21 42 50
Base content per 1 kb (bases) 452 548 327 125 250 298
Base content (%) 45.2% 54.8%
COX1 (size: 1551 bases) GC AT G C A T
Base content (bases) 707 844 419 288 455 389
Base content per 1 kb (bases) 456 544 270 186 293 251
Base content (%) 45.6% 54.4%
COX2 (size: 691 bases) GC AT G C A T
Base content (bases) 304 387 191 113 195 192
Base content per 1 kb (bases) 440 560 276 164 282 278
Base content (%) 44.0% 56.0%
COX3 (size: 786 bases) GC AT G C A T
Base content (bases) 366 420 232 134 227 193
Base content per 1 kb (bases) 466 534 295 170 289 246
Base content (%) 46.6% 53.4%
CYTB (size: 1141 bases) GC AT G C A T
Base content (bases) 534 607 356 178 331 276
Base content per 1 kb (bases) 468 532 312 156 290 242
Base content (%) 46.8% 53.2%
ND1 (size: 975 bases) GC AT G C A T
Base content (bases) 466 508 310 156 267 241
Base content per 1 kb (bases) 478 521 318 160 274 247
Base content (%) 47.8% 52.1%
ND2 (size: 1050 bases) GC AT G C A T
Base content (bases) 467 583 327 140 289 294
Base content per 1 kb (bases) 445 555 311 133 275 280
Base content (%) 44.5% 55.5%
ND3 (size: 349 bases) GC AT G C A T
Base content (bases) 157 192 108 49 105 87
Base content per 1 kb (bases) 450 550 309 140 301 249
Base content (%) 45.0% 55.0%
ND4 (size: 1381 bases) GC AT G C A T
Base content (bases) 616 765 414 202 385 380
Base content per 1 kb (bases) 446 554 300 146 279 275
Base content (%) 44.6% 55.4%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 146 151 98 48 79 72
Base content per 1 kb (bases) 492 508 330 162 266 242
Base content (%) 49.2% 50.8%
ND5 (size: 1839 bases) GC AT G C A T
Base content (bases) 814 1025 570 244 485 540
Base content per 1 kb (bases) 443 557 310 133 264 294
Base content (%) 44.3% 55.7%
ND6 (size: 522 bases) GC AT G C A T
Base content (bases) 247 275 178 69 76 199
Base content per 1 kb (bases) 473 527 341 132 146 381
Base content (%) 47.3% 52.7%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.85%)
Alanine (Ala, A)
n = 19 (8.37%)
Serine (Ser, S)
n = 7 (3.08%)
Threonine (Thr, T)
n = 23 (10.13%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 13 (5.73%)
Leucine (Leu, L)
n = 54 (23.79%)
Isoleucine (Ile, I)
n = 20 (8.81%)
Methionine (Met, M)
n = 9 (3.96%)
Proline (Pro, P)
n = 17 (7.49%)
Phenylalanine (Phe, F)
n = 12 (5.29%)
Tyrosine (Tyr, Y)
n = 4 (1.76%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 9 (3.96%)
Glutamine (Gln, Q)
n = 9 (3.96%)
Histidine (His, H)
n = 3 (1.32%)
Lysine (Lys, K)
n = 1 (0.44%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 9 6 14 8 22 1 8 9 0 3 4 6 0 7 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 6 7 5 1 2 7 2 0 3 6 7 1 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 10 1 1 2 0 0 0 4 1 3 3 1 4 5 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 4 0 0 1 1 0 0 2 4 0 0 0 1 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
48 80 66 34
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
26 62 32 108
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
11 73 87 57
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPAPWFAILVFSWLVFLTVIPPKVLGHTFTNEPTSQSTEKAKPEPWNWPWH*
Amino acid frequencies:
Glycine (Gly, G)
n = 1 (1.82%)
Alanine (Ala, A)
n = 3 (5.45%)
Serine (Ser, S)
n = 3 (5.45%)
Threonine (Thr, T)
n = 5 (9.09%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 4 (7.27%)
Leucine (Leu, L)
n = 5 (9.09%)
Isoleucine (Ile, I)
n = 2 (3.64%)
Methionine (Met, M)
n = 1 (1.82%)
Proline (Pro, P)
n = 9 (16.36%)
Phenylalanine (Phe, F)
n = 4 (7.27%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 3 (5.45%)
Asparagine (Asn, N)
n = 3 (5.45%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 2 (3.64%)
Lysine (Lys, K)
n = 3 (5.45%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 0 0 0 2 1 1 1 2 0 2 1 1 0 1 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 2 1 0 0 0 1 0 0 3 4 2 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 1 0 0 0 2 0 0 1 0 0 0 0 1 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 2 1 0 0 3 0 0 0 0 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
11 17 15 13
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
7 19 14 16
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
3 19 21 13
COX1 (size: 1551 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.11%)
Alanine (Ala, A)
n = 47 (9.11%)
Serine (Ser, S)
n = 30 (5.81%)
Threonine (Thr, T)
n = 36 (6.98%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 40 (7.75%)
Leucine (Leu, L)
n = 62 (12.02%)
Isoleucine (Ile, I)
n = 41 (7.95%)
Methionine (Met, M)
n = 24 (4.65%)
Proline (Pro, P)
n = 28 (5.43%)
Phenylalanine (Phe, F)
n = 42 (8.14%)
Tyrosine (Tyr, Y)
n = 18 (3.49%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 14 (2.71%)
Glutamic acid (Glu, E)
n = 11 (2.13%)
Asparagine (Asn, N)
n = 15 (2.91%)
Glutamine (Gln, Q)
n = 8 (1.55%)
Histidine (His, H)
n = 19 (3.68%)
Lysine (Lys, K)
n = 8 (1.55%)
Arginine (Arg, R)
n = 8 (1.55%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
22 19 12 13 11 17 9 11 3 5 11 10 16 3 23 19
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
12 0 1 15 20 12 0 6 13 19 9 4 6 12 6 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 15 2 5 11 9 0 1 4 5 13 0 1 4 11 7
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
12 9 2 4 10 8 0 1 0 5 2 0 0 1 0 17
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
159 113 129 116
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
78 136 94 209
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
51 170 166 130
COX2 (size: 691 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.93%)
Alanine (Ala, A)
n = 16 (6.99%)
Serine (Ser, S)
n = 16 (6.99%)
Threonine (Thr, T)
n = 10 (4.37%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 20 (8.73%)
Leucine (Leu, L)
n = 28 (12.23%)
Isoleucine (Ile, I)
n = 20 (8.73%)
Methionine (Met, M)
n = 12 (5.24%)
Proline (Pro, P)
n = 14 (6.11%)
Phenylalanine (Phe, F)
n = 8 (3.49%)
Tyrosine (Tyr, Y)
n = 9 (3.93%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 13 (5.68%)
Glutamic acid (Glu, E)
n = 15 (6.55%)
Asparagine (Asn, N)
n = 4 (1.75%)
Glutamine (Gln, Q)
n = 8 (3.49%)
Histidine (His, H)
n = 10 (4.37%)
Lysine (Lys, K)
n = 5 (2.18%)
Arginine (Arg, R)
n = 6 (2.62%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
6 14 8 12 7 5 0 3 8 0 6 5 7 2 3 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 1 2 7 4 3 2 2 4 1 3 6 5 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 3 0 5 6 2 0 0 3 6 3 0 1 2 2 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 13 2 7 6 3 2 1 1 4 0 0 0 0 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
73 62 54 41
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 53 64 88
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 76 74 65
COX3 (size: 786 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 22 (8.43%)
Alanine (Ala, A)
n = 21 (8.05%)
Serine (Ser, S)
n = 12 (4.6%)
Threonine (Thr, T)
n = 25 (9.58%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 18 (6.9%)
Leucine (Leu, L)
n = 33 (12.64%)
Isoleucine (Ile, I)
n = 13 (4.98%)
Methionine (Met, M)
n = 6 (2.3%)
Proline (Pro, P)
n = 12 (4.6%)
Phenylalanine (Phe, F)
n = 24 (9.2%)
Tyrosine (Tyr, Y)
n = 12 (4.6%)
Tryptophan (Trp, W)
n = 12 (4.6%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 10 (3.83%)
Asparagine (Asn, N)
n = 2 (0.77%)
Glutamine (Gln, Q)
n = 9 (3.45%)
Histidine (His, H)
n = 16 (6.13%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 5 4 10 3 8 5 7 8 1 5 8 2 3 11 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 2 7 7 7 0 5 11 6 0 2 6 4 0 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 7 1 3 2 4 0 0 3 1 11 0 0 2 0 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
12 9 1 0 5 2 0 0 0 4 1 0 0 1 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
76 68 51 67
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 67 57 94
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 97 85 66
CYTB (size: 1141 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 27 (7.12%)
Alanine (Ala, A)
n = 35 (9.23%)
Serine (Ser, S)
n = 23 (6.07%)
Threonine (Thr, T)
n = 22 (5.8%)
Cysteine (Cys, C)
n = 4 (1.06%)
Valine (Val, V)
n = 24 (6.33%)
Leucine (Leu, L)
n = 58 (15.3%)
Isoleucine (Ile, I)
n = 30 (7.92%)
Methionine (Met, M)
n = 10 (2.64%)
Proline (Pro, P)
n = 21 (5.54%)
Phenylalanine (Phe, F)
n = 30 (7.92%)
Tyrosine (Tyr, Y)
n = 14 (3.69%)
Tryptophan (Trp, W)
n = 13 (3.43%)
Aspartic acid (Asp, D)
n = 11 (2.9%)
Glutamic acid (Glu, E)
n = 5 (1.32%)
Asparagine (Asn, N)
n = 17 (4.49%)
Glutamine (Gln, Q)
n = 7 (1.85%)
Histidine (His, H)
n = 12 (3.17%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 17 8 13 18 14 4 9 7 0 4 9 10 1 11 19
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 3 8 19 8 0 1 11 8 7 3 9 7 2 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 6 1 8 8 4 2 1 0 4 10 2 0 5 12 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 3 2 5 6 9 0 0 0 8 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
102 97 89 92
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
53 100 75 152
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
23 159 112 86
ND1 (size: 975 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.56%)
Alanine (Ala, A)
n = 35 (10.8%)
Serine (Ser, S)
n = 21 (6.48%)
Threonine (Thr, T)
n = 20 (6.17%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 24 (7.41%)
Leucine (Leu, L)
n = 64 (19.75%)
Isoleucine (Ile, I)
n = 21 (6.48%)
Methionine (Met, M)
n = 8 (2.47%)
Proline (Pro, P)
n = 24 (7.41%)
Phenylalanine (Phe, F)
n = 17 (5.25%)
Tyrosine (Tyr, Y)
n = 12 (3.7%)
Tryptophan (Trp, W)
n = 8 (2.47%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.4%)
Asparagine (Asn, N)
n = 10 (3.09%)
Glutamine (Gln, Q)
n = 7 (2.16%)
Histidine (His, H)
n = 4 (1.23%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 12 6 14 14 23 5 7 6 1 8 4 9 3 9 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 6 16 12 1 0 6 6 6 6 14 4 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 7 1 3 8 5 0 0 5 4 8 1 1 4 6 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 9 2 2 2 7 0 1 0 6 1 0 0 0 1 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
92 99 71 62
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
39 95 56 134
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
25 114 114 71
ND2 (size: 1050 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (4.87%)
Alanine (Ala, A)
n = 41 (11.75%)
Serine (Ser, S)
n = 23 (6.59%)
Threonine (Thr, T)
n = 42 (12.03%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 12 (3.44%)
Leucine (Leu, L)
n = 79 (22.64%)
Isoleucine (Ile, I)
n = 23 (6.59%)
Methionine (Met, M)
n = 13 (3.72%)
Proline (Pro, P)
n = 20 (5.73%)
Phenylalanine (Phe, F)
n = 10 (2.87%)
Tyrosine (Tyr, Y)
n = 8 (2.29%)
Tryptophan (Trp, W)
n = 11 (3.15%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 8 (2.29%)
Asparagine (Asn, N)
n = 10 (2.87%)
Glutamine (Gln, Q)
n = 12 (3.44%)
Histidine (His, H)
n = 7 (2.01%)
Lysine (Lys, K)
n = 8 (2.29%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
20 3 10 22 15 20 5 10 11 1 3 3 4 2 8 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 1 6 17 18 0 0 6 9 2 2 9 9 0 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
18 14 1 7 4 7 0 1 4 2 6 1 7 4 6 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 7 1 0 0 8 0 1 1 2 0 0 0 0 1 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
78 105 101 66
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
38 121 54 137
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
24 101 139 86
ND3 (size: 1050 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (4.87%)
Alanine (Ala, A)
n = 41 (11.75%)
Serine (Ser, S)
n = 23 (6.59%)
Threonine (Thr, T)
n = 42 (12.03%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 12 (3.44%)
Leucine (Leu, L)
n = 79 (22.64%)
Isoleucine (Ile, I)
n = 23 (6.59%)
Methionine (Met, M)
n = 13 (3.72%)
Proline (Pro, P)
n = 20 (5.73%)
Phenylalanine (Phe, F)
n = 10 (2.87%)
Tyrosine (Tyr, Y)
n = 8 (2.29%)
Tryptophan (Trp, W)
n = 11 (3.15%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 8 (2.29%)
Asparagine (Asn, N)
n = 10 (2.87%)
Glutamine (Gln, Q)
n = 12 (3.44%)
Histidine (His, H)
n = 7 (2.01%)
Lysine (Lys, K)
n = 8 (2.29%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
20 3 10 22 15 20 5 10 11 1 3 3 4 2 8 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 1 6 17 18 0 0 6 9 2 2 9 9 0 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
18 14 1 7 4 7 0 1 4 2 6 1 7 4 6 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 7 1 0 0 8 0 1 1 2 0 0 0 0 1 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
78 105 101 66
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
38 121 54 137
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
24 101 139 86
ND4 (size: 1381 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 27 (5.88%)
Alanine (Ala, A)
n = 35 (7.63%)
Serine (Ser, S)
n = 33 (7.19%)
Threonine (Thr, T)
n = 38 (8.28%)
Cysteine (Cys, C)
n = 5 (1.09%)
Valine (Val, V)
n = 13 (2.83%)
Leucine (Leu, L)
n = 95 (20.7%)
Isoleucine (Ile, I)
n = 38 (8.28%)
Methionine (Met, M)
n = 29 (6.32%)
Proline (Pro, P)
n = 26 (5.66%)
Phenylalanine (Phe, F)
n = 16 (3.49%)
Tyrosine (Tyr, Y)
n = 15 (3.27%)
Tryptophan (Trp, W)
n = 20 (4.36%)
Aspartic acid (Asp, D)
n = 5 (1.09%)
Glutamic acid (Glu, E)
n = 12 (2.61%)
Asparagine (Asn, N)
n = 10 (2.18%)
Glutamine (Gln, Q)
n = 12 (2.61%)
Histidine (His, H)
n = 10 (2.18%)
Lysine (Lys, K)
n = 10 (2.18%)
Arginine (Arg, R)
n = 11 (2.4%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 21 23 19 17 30 11 17 10 2 2 4 7 0 7 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 1 4 8 16 8 3 4 9 11 3 7 12 7 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
18 12 3 3 13 5 3 4 5 7 8 2 1 6 4 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 12 0 1 4 10 0 3 2 2 4 0 0 0 0 18
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
92 136 134 98
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
72 123 74 191
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
38 155 172 95
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 6 (6.12%)
Alanine (Ala, A)
n = 14 (14.29%)
Serine (Ser, S)
n = 9 (9.18%)
Threonine (Thr, T)
n = 7 (7.14%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 3 (3.06%)
Leucine (Leu, L)
n = 23 (23.47%)
Isoleucine (Ile, I)
n = 2 (2.04%)
Methionine (Met, M)
n = 6 (6.12%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 6 (6.12%)
Tyrosine (Tyr, Y)
n = 1 (1.02%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 3 (3.06%)
Asparagine (Asn, N)
n = 1 (1.02%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 3 (3.06%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 0 5 4 9 7 0 3 3 0 0 0 3 0 4 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 2 1 1 8 3 2 2 1 2 1 1 0 1 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 3 0 1 1 4 0 0 3 0 1 0 0 0 1 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 2 1 0 1 0 0 0 2 1 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
27 32 19 21
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
16 29 14 40
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
5 37 39 18
ND5 (size: 1839 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 31 (5.07%)
Alanine (Ala, A)
n = 49 (8.01%)
Serine (Ser, S)
n = 42 (6.86%)
Threonine (Thr, T)
n = 68 (11.11%)
Cysteine (Cys, C)
n = 6 (0.98%)
Valine (Val, V)
n = 22 (3.59%)
Leucine (Leu, L)
n = 100 (16.34%)
Isoleucine (Ile, I)
n = 50 (8.17%)
Methionine (Met, M)
n = 27 (4.41%)
Proline (Pro, P)
n = 27 (4.41%)
Phenylalanine (Phe, F)
n = 42 (6.86%)
Tyrosine (Tyr, Y)
n = 9 (1.47%)
Tryptophan (Trp, W)
n = 14 (2.29%)
Aspartic acid (Asp, D)
n = 12 (1.96%)
Glutamic acid (Glu, E)
n = 12 (1.96%)
Asparagine (Asn, N)
n = 32 (5.23%)
Glutamine (Gln, Q)
n = 21 (3.43%)
Histidine (His, H)
n = 19 (3.1%)
Lysine (Lys, K)
n = 20 (3.27%)
Arginine (Arg, R)
n = 9 (1.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
27 23 18 20 22 35 7 14 19 2 3 9 8 2 15 27
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
9 1 5 12 23 10 4 2 8 17 4 5 9 10 3 12
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
37 16 3 5 11 12 3 3 8 4 5 1 2 10 22 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
16 10 2 3 9 17 3 0 1 6 2 0 0 1 0 13
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
126 160 208 119
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
71 175 126 241
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
47 235 206 125
ND6 (size: 522 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (13.87%)
Alanine (Ala, A)
n = 19 (10.98%)
Serine (Ser, S)
n = 12 (6.94%)
Threonine (Thr, T)
n = 5 (2.89%)
Cysteine (Cys, C)
n = 2 (1.16%)
Valine (Val, V)
n = 28 (16.18%)
Leucine (Leu, L)
n = 32 (18.5%)
Isoleucine (Ile, I)
n = 2 (1.16%)
Methionine (Met, M)
n = 5 (2.89%)
Proline (Pro, P)
n = 4 (2.31%)
Phenylalanine (Phe, F)
n = 10 (5.78%)
Tyrosine (Tyr, Y)
n = 8 (4.62%)
Tryptophan (Trp, W)
n = 5 (2.89%)
Aspartic acid (Asp, D)
n = 3 (1.73%)
Glutamic acid (Glu, E)
n = 5 (2.89%)
Asparagine (Asn, N)
n = 1 (0.58%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 2 (1.16%)
Lysine (Lys, K)
n = 1 (0.58%)
Arginine (Arg, R)
n = 5 (2.89%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 1 1 7 1 2 1 8 0 0 7 0 6 15 9 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 2 0 8 0 7 4 5 1 5 13 4 0 0 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 3 0 6 1 1 2 2 0 8 0 4 13 0 1 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 3 2 2 1 1 0 2 0 1 2 0 0 0 1 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
79 22 16 57
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
38 38 21 77
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
61 9 39 65
Total protein-coding genes (size: 11434 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 246 (6.46%)
Alanine (Ala, A)
n = 343 (9.0%)
Serine (Ser, S)
n = 238 (6.25%)
Threonine (Thr, T)
n = 313 (8.22%)
Cysteine (Cys, C)
n = 27 (0.71%)
Valine (Val, V)
n = 223 (5.85%)
Leucine (Leu, L)
n = 659 (17.3%)
Isoleucine (Ile, I)
n = 274 (7.19%)
Methionine (Met, M)
n = 151 (3.96%)
Proline (Pro, P)
n = 212 (5.57%)
Phenylalanine (Phe, F)
n = 228 (5.99%)
Tyrosine (Tyr, Y)
n = 112 (2.94%)
Tryptophan (Trp, W)
n = 121 (3.18%)
Aspartic acid (Asp, D)
n = 74 (1.94%)
Glutamic acid (Glu, E)
n = 105 (2.76%)
Asparagine (Asn, N)
n = 115 (3.02%)
Glutamine (Gln, Q)
n = 101 (2.65%)
Histidine (His, H)
n = 108 (2.84%)
Lysine (Lys, K)
n = 75 (1.97%)
Arginine (Arg, R)
n = 75 (1.97%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
144 130 101 152 132 192 49 106 88 13 54 57 81 31 111 117
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
50 9 18 81 148 96 18 29 78 91 48 45 83 72 12 68
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
131 101 13 48 73 55 10 12 40 43 69 14 28 42 73 28
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
80 88 17 27 47 69 6 9 11 43 12 0 0 6 3 107
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
991 1021 980 817
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
521 1054 699 1535
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
324 1287 1296 902 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​O​n​c​o​r​h​y​n​c​h​u​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ t​s​h​a​w​y​t​s​c​h​a​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.