Viewing data for Homo sapiens


Scientific name Homo sapiens
Common name Human
Maximum lifespan 122.50 years (Homo sapiens@AnAge)

Total mtDNA (size: 16569 bases) GC AT G C A T
Base content (bases) 7350 9218 5181 2169 4094 5124
Base content per 1 kb (bases) 444 556 313 131 247 309
Base content (%) 44.4% 55.6%
Total protein-coding genes (size: 11341 bases) GC AT G C A T
Base content (bases) 5102 6239 3770 1332 2870 3369
Base content per 1 kb (bases) 450 550 332 117 253 297
Base content (%) 45.0% 55.0%
D-loop (size: 1122 bases) GC AT G C A T
Base content (bases) 523 599 371 152 260 339
Base content per 1 kb (bases) 466 534 331 135 232 302
Base content (%) 46.6% 53.4%
Total tRNA-coding genes (size: 1504 bases) GC AT G C A T
Base content (bases) 572 932 353 219 405 527
Base content per 1 kb (bases) 380 620 235 146 269 350
Base content (%) 38.0% 62.0%
Total rRNA-coding genes (size: 2513 bases) GC AT G C A T
Base content (bases) 1101 1411 650 451 549 862
Base content per 1 kb (bases) 438 561 259 179 218 343
Base content (%) 43.8% 56.1%
12S rRNA gene (size: 954 bases) GC AT G C A T
Base content (bases) 434 520 253 181 205 315
Base content per 1 kb (bases) 455 545 265 190 215 330
Base content (%) 45.5% 54.5%
16S rRNA gene (size: 1559 bases) GC AT G C A T
Base content (bases) 667 891 397 270 344 547
Base content per 1 kb (bases) 428 572 255 173 221 351
Base content (%) 42.8% 57.2%

ATP6 (size: 681 bases) GC AT G C A T
Base content (bases) 301 380 230 71 174 206
Base content per 1 kb (bases) 442 558 338 104 256 302
Base content (%) 44.2% 55.8%
ATP8 (size: 207 bases) GC AT G C A T
Base content (bases) 82 125 69 13 45 80
Base content per 1 kb (bases) 396 604 333 63 217 386
Base content (%) 39.6% 60.4%
COX1 (size: 1542 bases) GC AT G C A T
Base content (bases) 713 829 463 250 410 419
Base content per 1 kb (bases) 462 538 300 162 266 272
Base content (%) 46.2% 53.8%
COX2 (size: 684 bases) GC AT G C A T
Base content (bases) 316 368 214 102 172 196
Base content per 1 kb (bases) 462 538 313 149 251 287
Base content (%) 46.2% 53.8%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 365 419 249 116 209 210
Base content per 1 kb (bases) 466 534 318 148 267 268
Base content (%) 46.6% 53.4%
CYTB (size: 1141 bases) GC AT G C A T
Base content (bases) 528 613 391 137 287 326
Base content per 1 kb (bases) 463 537 343 120 252 286
Base content (%) 46.3% 53.7%
ND1 (size: 956 bases) GC AT G C A T
Base content (bases) 456 500 344 112 228 272
Base content per 1 kb (bases) 477 523 360 117 238 285
Base content (%) 47.7% 52.3%
ND2 (size: 1042 bases) GC AT G C A T
Base content (bases) 448 594 349 99 268 326
Base content per 1 kb (bases) 430 570 335 95 257 313
Base content (%) 43.0% 57.0%
ND3 (size: 346 bases) GC AT G C A T
Base content (bases) 139 207 102 37 105 102
Base content per 1 kb (bases) 402 598 295 107 303 295
Base content (%) 40.2% 59.8%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 610 768 473 137 352 416
Base content per 1 kb (bases) 443 557 343 99 255 302
Base content (%) 44.3% 55.7%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 128 169 92 36 85 84
Base content per 1 kb (bases) 431 569 310 121 286 283
Base content (%) 43.1% 56.9%
ND5 (size: 1812 bases) GC AT G C A T
Base content (bases) 814 998 622 192 447 551
Base content per 1 kb (bases) 449 551 343 106 247 304
Base content (%) 44.9% 55.1%
ND6 (size: 525 bases) GC AT G C A T
Base content (bases) 224 301 187 37 103 198
Base content per 1 kb (bases) 427 573 356 70 196 377
Base content (%) 42.7% 57.3%

ATP6 (size: 681 bases)
Amino acid sequence: MNENLFASFIAPTILGLPAAVLIILFPPLLIPTSKYLINNRLITTQQWLIKLTSKQMMTMHNTKGRTWSLMLVSLIIFIATTNLLGLLPH View full
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.54%)
Alanine (Ala, A)
n = 19 (8.41%)
Serine (Ser, S)
n = 13 (5.75%)
Threonine (Thr, T)
n = 26 (11.5%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 8 (3.54%)
Leucine (Leu, L)
n = 44 (19.47%)
Isoleucine (Ile, I)
n = 29 (12.83%)
Methionine (Met, M)
n = 12 (5.31%)
Proline (Pro, P)
n = 14 (6.19%)
Phenylalanine (Phe, F)
n = 9 (3.98%)
Tyrosine (Tyr, Y)
n = 3 (1.33%)
Tryptophan (Trp, W)
n = 3 (1.33%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 3 (1.33%)
Asparagine (Asn, N)
n = 11 (4.87%)
Glutamine (Gln, Q)
n = 7 (3.1%)
Histidine (His, H)
n = 6 (2.65%)
Lysine (Lys, K)
n = 6 (2.65%)
Arginine (Arg, R)
n = 4 (1.77%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 16 8 5 7 21 6 4 7 0 2 1 4 1 4 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 0 3 12 3 1 0 5 3 0 3 8 3 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 10 0 4 2 4 0 0 3 1 2 0 1 2 9 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 3 0 0 1 5 1 0 2 2 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
39 70 87 31
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
18 69 38 102
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 91 81 41
ATP8 (size: 207 bases)
Amino acid sequence: MPQLNTTVWPTMITPMLLTLFLITQLKMLNTNYHLPPSPKPMKMKNYNKPWEPKWTKICSLHSLPPQS*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 0 (0%)
Serine (Ser, S)
n = 4 (5.88%)
Threonine (Thr, T)
n = 8 (11.76%)
Cysteine (Cys, C)
n = 1 (1.47%)
Valine (Val, V)
n = 1 (1.47%)
Leucine (Leu, L)
n = 10 (14.71%)
Isoleucine (Ile, I)
n = 3 (4.41%)
Methionine (Met, M)
n = 6 (8.82%)
Proline (Pro, P)
n = 11 (16.18%)
Phenylalanine (Phe, F)
n = 1 (1.47%)
Tyrosine (Tyr, Y)
n = 2 (2.94%)
Tryptophan (Trp, W)
n = 3 (4.41%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 1 (1.47%)
Asparagine (Asn, N)
n = 5 (7.35%)
Glutamine (Gln, Q)
n = 3 (4.41%)
Histidine (His, H)
n = 2 (2.94%)
Lysine (Lys, K)
n = 7 (10.29%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 2 5 2 2 4 0 1 3 0 0 0 1 0 0 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 0 0 0 0 0 0 0 0 0 1 7 3 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 2 1 0 1 2 1 0 0 1 1 1 1 2 3 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 1 0 0 0 6 1 0 0 0 0 0 0 0 1 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
2 24 29 14
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
4 23 21 21
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
7 22 30 10
COX1 (size: 1542 bases)
Amino acid sequence: MFADRWLFSTNHKDIGTLYLLFGAWAGVLGTALSLLIRAELGQPGNLLGNDHIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAP View full
Amino acid frequencies:
Glycine (Gly, G)
n = 46 (8.97%)
Alanine (Ala, A)
n = 40 (7.8%)
Serine (Ser, S)
n = 32 (6.24%)
Threonine (Thr, T)
n = 34 (6.63%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 36 (7.02%)
Leucine (Leu, L)
n = 62 (12.09%)
Isoleucine (Ile, I)
n = 38 (7.41%)
Methionine (Met, M)
n = 32 (6.24%)
Proline (Pro, P)
n = 29 (5.65%)
Phenylalanine (Phe, F)
n = 41 (7.99%)
Tyrosine (Tyr, Y)
n = 22 (4.29%)
Tryptophan (Trp, W)
n = 16 (3.12%)
Aspartic acid (Asp, D)
n = 15 (2.92%)
Glutamic acid (Glu, E)
n = 10 (1.95%)
Asparagine (Asn, N)
n = 17 (3.31%)
Glutamine (Gln, Q)
n = 6 (1.17%)
Histidine (His, H)
n = 18 (3.51%)
Lysine (Lys, K)
n = 10 (1.95%)
Arginine (Arg, R)
n = 8 (1.56%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 26 25 5 13 33 4 7 5 1 4 12 17 3 12 29
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 0 1 11 15 13 1 7 17 19 3 5 18 6 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 16 2 9 10 7 2 0 4 4 18 0 0 4 13 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
14 7 3 2 13 9 1 2 2 4 0 1 0 0 0 16
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
147 116 136 115
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
76 131 98 209
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
27 216 185 86
COX2 (size: 684 bases)
Amino acid sequence: MAHAAQVGLQDATSPIMEELITFHDHALMIIFLICFLVLYALFLTLTTKLTNTNISDAQEMETVWTILPAIILVLIALPSLRILYMTDEV View full
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.85%)
Alanine (Ala, A)
n = 14 (6.17%)
Serine (Ser, S)
n = 10 (4.41%)
Threonine (Thr, T)
n = 21 (9.25%)
Cysteine (Cys, C)
n = 3 (1.32%)
Valine (Val, V)
n = 13 (5.73%)
Leucine (Leu, L)
n = 33 (14.54%)
Isoleucine (Ile, I)
n = 22 (9.69%)
Methionine (Met, M)
n = 10 (4.41%)
Proline (Pro, P)
n = 15 (6.61%)
Phenylalanine (Phe, F)
n = 10 (4.41%)
Tyrosine (Tyr, Y)
n = 9 (3.96%)
Tryptophan (Trp, W)
n = 4 (1.76%)
Aspartic acid (Asp, D)
n = 11 (4.85%)
Glutamic acid (Glu, E)
n = 11 (4.85%)
Asparagine (Asn, N)
n = 7 (3.08%)
Glutamine (Gln, Q)
n = 7 (3.08%)
Histidine (His, H)
n = 6 (2.64%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 15 8 7 6 12 3 4 6 1 1 7 5 0 3 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 2 4 5 4 1 2 4 3 2 1 9 3 2 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 8 0 1 4 4 0 1 0 1 8 1 1 2 5 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 8 3 3 8 4 0 2 1 3 0 0 0 0 1 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
60 62 65 41
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 59 56 88
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
17 93 75 43
COX3 (size: 784 bases)
Amino acid sequence: MTHQSHAYHMVKPSPWPLTGALSALLMTSGLAMWFHFHSMTLLMLGLLTNTLTMYQWWRDVTRESTYQGHHTPPVQKGLRYGMILFITSE View full
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (7.31%)
Alanine (Ala, A)
n = 15 (5.77%)
Serine (Ser, S)
n = 21 (8.08%)
Threonine (Thr, T)
n = 24 (9.23%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 13 (5.0%)
Leucine (Leu, L)
n = 34 (13.08%)
Isoleucine (Ile, I)
n = 14 (5.38%)
Methionine (Met, M)
n = 11 (4.23%)
Proline (Pro, P)
n = 13 (5.0%)
Phenylalanine (Phe, F)
n = 23 (8.85%)
Tyrosine (Tyr, Y)
n = 11 (4.23%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 3 (1.15%)
Glutamic acid (Glu, E)
n = 7 (2.69%)
Asparagine (Asn, N)
n = 6 (2.31%)
Glutamine (Gln, Q)
n = 9 (3.46%)
Histidine (His, H)
n = 17 (6.54%)
Lysine (Lys, K)
n = 3 (1.15%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 7 8 3 9 16 3 3 9 0 2 4 6 1 13 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 1 1 11 3 0 1 10 4 4 2 6 4 1 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 11 1 2 7 8 0 1 3 4 7 3 0 1 5 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
12 5 2 2 1 3 0 0 2 3 0 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
57 75 62 67
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
41 69 56 95
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
18 105 92 46
CYTB (size: 1141 bases)
Amino acid sequence: MTPMRKTNPLMKLINHSFIDLPTPSNISAWWNFGSLLGACLILQITTGLFLAMHYSPDASTAFSSIAHITRDVNYGWIIRYLHANGASMF View full
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (6.33%)
Alanine (Ala, A)
n = 25 (6.6%)
Serine (Ser, S)
n = 29 (7.65%)
Threonine (Thr, T)
n = 31 (8.18%)
Cysteine (Cys, C)
n = 2 (0.53%)
Valine (Val, V)
n = 10 (2.64%)
Leucine (Leu, L)
n = 64 (16.89%)
Isoleucine (Ile, I)
n = 38 (10.03%)
Methionine (Met, M)
n = 15 (3.96%)
Proline (Pro, P)
n = 23 (6.07%)
Phenylalanine (Phe, F)
n = 24 (6.33%)
Tyrosine (Tyr, Y)
n = 17 (4.49%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 11 (2.9%)
Glutamic acid (Glu, E)
n = 4 (1.06%)
Asparagine (Asn, N)
n = 15 (3.96%)
Glutamine (Gln, Q)
n = 8 (2.11%)
Histidine (His, H)
n = 12 (3.17%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 7 (1.85%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 28 12 7 21 25 2 7 8 0 1 3 6 0 7 17
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 2 0 17 8 0 0 12 9 3 4 9 9 1 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
13 13 1 0 11 14 0 1 3 6 11 1 2 3 12 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 4 0 1 10 8 1 0 3 4 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
74 105 112 89
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
49 104 76 151
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 182 138 46
ND1 (size: 956 bases)
Amino acid sequence: MPMANLLLLIVPILIAMAFLMLTERKILGYMQLRKGPNVVGPYGLLQPFADAMKLFTKEPLKPATSTITLYITAPTLALTIALLLWTPLP View full
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.79%)
Alanine (Ala, A)
n = 27 (8.52%)
Serine (Ser, S)
n = 21 (6.62%)
Threonine (Thr, T)
n = 35 (11.04%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 10 (3.15%)
Leucine (Leu, L)
n = 63 (19.87%)
Isoleucine (Ile, I)
n = 23 (7.26%)
Methionine (Met, M)
n = 16 (5.05%)
Proline (Pro, P)
n = 22 (6.94%)
Phenylalanine (Phe, F)
n = 16 (5.05%)
Tyrosine (Tyr, Y)
n = 14 (4.42%)
Tryptophan (Trp, W)
n = 9 (2.84%)
Aspartic acid (Asp, D)
n = 4 (1.26%)
Glutamic acid (Glu, E)
n = 11 (3.47%)
Asparagine (Asn, N)
n = 13 (4.1%)
Glutamine (Gln, Q)
n = 6 (1.89%)
Histidine (His, H)
n = 2 (0.63%)
Lysine (Lys, K)
n = 7 (2.21%)
Arginine (Arg, R)
n = 7 (2.21%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 13 13 6 19 27 5 5 6 0 2 5 3 0 4 12
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 3 14 10 0 0 8 1 3 2 17 2 1 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
20 14 0 2 8 8 0 1 2 5 9 0 1 0 13 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 8 3 0 4 6 1 0 2 5 0 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
64 94 97 63
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
31 102 57 128
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
17 148 117 36
ND2 (size: 1042 bases)
Amino acid sequence: INPLAQPVIYSTIFAGTLITALSSHWFFTWVGLEMNMLAFIPVLTKKMNPRSTEAAIKYFLTQATASMILLMAILFNNMLSGQWTMTNTT View full
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (3.76%)
Alanine (Ala, A)
n = 20 (5.78%)
Serine (Ser, S)
n = 28 (8.09%)
Threonine (Thr, T)
n = 43 (12.43%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 8 (2.31%)
Leucine (Leu, L)
n = 64 (18.5%)
Isoleucine (Ile, I)
n = 32 (9.25%)
Methionine (Met, M)
n = 24 (6.94%)
Proline (Pro, P)
n = 23 (6.65%)
Phenylalanine (Phe, F)
n = 15 (4.34%)
Tyrosine (Tyr, Y)
n = 10 (2.89%)
Tryptophan (Trp, W)
n = 11 (3.18%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 6 (1.73%)
Asparagine (Asn, N)
n = 20 (5.78%)
Glutamine (Gln, Q)
n = 10 (2.89%)
Histidine (His, H)
n = 4 (1.16%)
Lysine (Lys, K)
n = 12 (3.47%)
Arginine (Arg, R)
n = 4 (1.16%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 24 23 7 18 26 4 8 8 2 3 2 3 0 8 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 4 7 8 1 1 7 5 0 5 12 4 2 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
24 11 3 4 11 7 1 1 4 2 8 1 1 6 14 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 5 1 0 0 10 2 1 3 0 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
47 96 136 68
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
33 109 62 143
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
19 144 128 56
ND3 (size: 1042 bases)
Amino acid sequence: INPLAQPVIYSTIFAGTLITALSSHWFFTWVGLEMNMLAFIPVLTKKMNPRSTEAAIKYFLTQATASMILLMAILFNNMLSGQWTMTNTT View full
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (3.76%)
Alanine (Ala, A)
n = 20 (5.78%)
Serine (Ser, S)
n = 28 (8.09%)
Threonine (Thr, T)
n = 43 (12.43%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 8 (2.31%)
Leucine (Leu, L)
n = 64 (18.5%)
Isoleucine (Ile, I)
n = 32 (9.25%)
Methionine (Met, M)
n = 24 (6.94%)
Proline (Pro, P)
n = 23 (6.65%)
Phenylalanine (Phe, F)
n = 15 (4.34%)
Tyrosine (Tyr, Y)
n = 10 (2.89%)
Tryptophan (Trp, W)
n = 11 (3.18%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 6 (1.73%)
Asparagine (Asn, N)
n = 20 (5.78%)
Glutamine (Gln, Q)
n = 10 (2.89%)
Histidine (His, H)
n = 4 (1.16%)
Lysine (Lys, K)
n = 12 (3.47%)
Arginine (Arg, R)
n = 4 (1.16%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 24 23 7 18 26 4 8 8 2 3 2 3 0 8 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 4 7 8 1 1 7 5 0 5 12 4 2 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
24 11 3 4 11 7 1 1 4 2 8 1 1 6 14 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 5 1 0 0 10 2 1 3 0 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
47 96 136 68
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
33 109 62 143
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
19 144 128 56
ND4 (size: 1378 bases)
Amino acid sequence: MLKLIVPTIMLLPLTWLSKKHMIWINTTTHSLIISIIPLLFFNQINNNLFSCSPTFSSDPLTTPLLMLTTWLLPLTIMASQRHLSSEPLS View full
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (3.71%)
Alanine (Ala, A)
n = 26 (5.68%)
Serine (Ser, S)
n = 43 (9.39%)
Threonine (Thr, T)
n = 48 (10.48%)
Cysteine (Cys, C)
n = 3 (0.66%)
Valine (Val, V)
n = 13 (2.84%)
Leucine (Leu, L)
n = 96 (20.96%)
Isoleucine (Ile, I)
n = 39 (8.52%)
Methionine (Met, M)
n = 27 (5.9%)
Proline (Pro, P)
n = 23 (5.02%)
Phenylalanine (Phe, F)
n = 20 (4.37%)
Tyrosine (Tyr, Y)
n = 13 (2.84%)
Tryptophan (Trp, W)
n = 13 (2.84%)
Aspartic acid (Asp, D)
n = 3 (0.66%)
Glutamic acid (Glu, E)
n = 9 (1.97%)
Asparagine (Asn, N)
n = 23 (5.02%)
Glutamine (Gln, Q)
n = 10 (2.18%)
Histidine (His, H)
n = 13 (2.84%)
Lysine (Lys, K)
n = 11 (2.4%)
Arginine (Arg, R)
n = 9 (1.97%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
16 23 24 10 31 42 4 8 9 1 0 4 8 1 9 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 2 6 12 8 0 1 9 4 3 3 14 6 0 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
17 22 1 5 17 10 1 2 8 2 11 1 1 1 22 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
12 9 0 0 3 10 1 0 5 4 0 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
68 142 158 91
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
52 130 82 195
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
17 201 176 65
ND4L (size: 297 bases)
Amino acid sequence: MPLIYMNIMLAFTISLLGMLVYRSHLMSSLLCLEGMMLSLFIMATLMTLNTHSLLANIVPIAMLVFAACEAAVGLALLVSISNTYGLDYV View full
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 9 (9.18%)
Serine (Ser, S)
n = 8 (8.16%)
Threonine (Thr, T)
n = 5 (5.1%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 6 (6.12%)
Leucine (Leu, L)
n = 23 (23.47%)
Isoleucine (Ile, I)
n = 7 (7.14%)
Methionine (Met, M)
n = 10 (10.2%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 3 (3.06%)
Tyrosine (Tyr, Y)
n = 4 (4.08%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 6 (6.12%)
Glutamine (Gln, Q)
n = 1 (1.02%)
Histidine (His, H)
n = 3 (3.06%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 1 (1.02%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 2 9 1 6 14 1 1 1 0 0 2 2 2 2 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 3 1 5 2 1 0 2 2 0 1 1 0 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 1 0 0 4 3 1 0 0 2 2 0 0 2 4 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 2 0 0 1 0 0 0 1 0 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
22 29 28 20
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
8 24 18 49
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
6 39 38 16
ND5 (size: 1812 bases)
Amino acid sequence: MTMHTTMTTLTLTSLIPPILTTLVNPNKKNSYPHYVKSIVASTFIISLFPTTMFMCLDQEVIISNWHWATTQTTQLSLSFKLDYFSMMFI View full
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (4.31%)
Alanine (Ala, A)
n = 44 (7.3%)
Serine (Ser, S)
n = 49 (8.13%)
Threonine (Thr, T)
n = 65 (10.78%)
Cysteine (Cys, C)
n = 6 (1.0%)
Valine (Val, V)
n = 15 (2.49%)
Leucine (Leu, L)
n = 104 (17.25%)
Isoleucine (Ile, I)
n = 54 (8.96%)
Methionine (Met, M)
n = 26 (4.31%)
Proline (Pro, P)
n = 32 (5.31%)
Phenylalanine (Phe, F)
n = 38 (6.3%)
Tyrosine (Tyr, Y)
n = 16 (2.65%)
Tryptophan (Trp, W)
n = 12 (1.99%)
Aspartic acid (Asp, D)
n = 11 (1.82%)
Glutamic acid (Glu, E)
n = 9 (1.49%)
Asparagine (Asn, N)
n = 33 (5.47%)
Glutamine (Gln, Q)
n = 20 (3.32%)
Histidine (His, H)
n = 14 (2.32%)
Lysine (Lys, K)
n = 21 (3.48%)
Arginine (Arg, R)
n = 8 (1.33%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
18 36 23 11 31 45 8 7 17 3 6 4 5 0 5 33
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 5 5 19 20 0 4 11 10 1 7 16 9 0 13
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
29 22 1 2 20 13 1 3 10 6 10 1 2 6 27 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 8 1 3 8 20 1 1 4 3 0 0 0 1 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
105 169 212 118
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
65 177 125 237
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
22 276 214 92
ND6 (size: 525 bases)
Amino acid sequence: MMYALFLLSVGLVMGFVGFSSKPSPIYGGLVLIVSGVVGCVIILNFGGGYMGLMVFLIYLGGMMVVFGYTTAMAIEEYPEAWGSGVEVLV View full
Amino acid frequencies:
Glycine (Gly, G)
n = 29 (16.67%)
Alanine (Ala, A)
n = 8 (4.6%)
Serine (Ser, S)
n = 10 (5.75%)
Threonine (Thr, T)
n = 4 (2.3%)
Cysteine (Cys, C)
n = 1 (0.57%)
Valine (Val, V)
n = 31 (17.82%)
Leucine (Leu, L)
n = 19 (10.92%)
Isoleucine (Ile, I)
n = 12 (6.9%)
Methionine (Met, M)
n = 10 (5.75%)
Proline (Pro, P)
n = 4 (2.3%)
Phenylalanine (Phe, F)
n = 8 (4.6%)
Tyrosine (Tyr, Y)
n = 11 (6.32%)
Tryptophan (Trp, W)
n = 5 (2.87%)
Aspartic acid (Asp, D)
n = 3 (1.72%)
Glutamic acid (Glu, E)
n = 10 (5.75%)
Asparagine (Asn, N)
n = 4 (2.3%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 2 (1.15%)
Arginine (Arg, R)
n = 3 (1.72%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 0 2 0 0 0 3 8 0 0 9 3 9 10 8 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
8 1 0 4 0 1 3 8 0 6 15 4 0 0 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 2 0 3 0 2 0 3 2 11 0 2 8 3 1 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 1 9 3 0 1 1 1 0 0 2 0 1 0 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
81 10 38 46
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 21 30 80
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
62 6 35 72
Total protein-coding genes (size: 11395 bases)
Amino acid sequence: MPMANLLLLIVPILIAMAFLMLTERKILGYMQLRKGPNVVGPYGLLQPFADAMKLFTKEPLKPATSTITLYITAPTLALTIALLLWTPLP View full
Amino acid frequencies:
Glycine (Gly, G)
n = 212 (5.59%)
Alanine (Ala, A)
n = 255 (6.72%)
Serine (Ser, S)
n = 274 (7.22%)
Threonine (Thr, T)
n = 351 (9.25%)
Cysteine (Cys, C)
n = 22 (0.58%)
Valine (Val, V)
n = 167 (4.4%)
Leucine (Leu, L)
n = 644 (16.97%)
Isoleucine (Ile, I)
n = 320 (8.43%)
Methionine (Met, M)
n = 207 (5.45%)
Proline (Pro, P)
n = 219 (5.77%)
Phenylalanine (Phe, F)
n = 216 (5.69%)
Tyrosine (Tyr, Y)
n = 135 (3.56%)
Tryptophan (Trp, W)
n = 104 (2.74%)
Aspartic acid (Asp, D)
n = 66 (1.74%)
Glutamic acid (Glu, E)
n = 88 (2.32%)
Asparagine (Asn, N)
n = 164 (4.32%)
Glutamine (Gln, Q)
n = 90 (2.37%)
Histidine (His, H)
n = 97 (2.56%)
Lysine (Lys, K)
n = 95 (2.5%)
Arginine (Arg, R)
n = 63 (1.66%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
124 196 167 65 167 276 45 73 82 8 31 48 70 18 77 139
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
40 5 17 43 124 80 8 24 87 67 34 41 119 52 7 52
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
155 134 10 32 99 83 7 14 39 46 89 11 18 32 132 18
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
79 64 24 15 51 85 10 7 26 28 2 1 1 3 2 93
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
788 1022 1192 794
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
456 1046 740 1554
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
245 1567 1358 626 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​H​o​m​o​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ s​a​p​i​e​n​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.